View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1719-Insertion-2 (Length: 454)

Name: NF1719-Insertion-2
Description: NF1719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1719-Insertion-2
NF1719-Insertion-2
[»] chr2 (1 HSPs)
chr2 (7-454)||(35667714-35668166)


Alignment Details
Target: chr2 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 7 - 454
Target Start/End: Original strand, 35667714 - 35668166
Alignment:
Q  7 atcaaatacattagactttatagaaaaataatatgacttgatatataaataaatttcaaggatgagagtagnnnnnnnnnn-agctaaatcgcttctgta 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           ||||||||||||||||||    
T  35667714 atcaaatacattagactttatagaaaaataatatgacttgatatataaataaatttcaaggatgagagtagtttttttttttagctaaatcgcttctgta 35667813  T
Q  106 catggatatagcatggttcaaatattg-tctaatgaatctaataacacaagagcataaatgtaaagcatattgacgaaataaaatgttcggaactaatta 204  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  35667814 catggatatagcatggttcaaatattggtctaatgaatctaataacacaagagcataaatgtaaagcatattgacgaaatcaaatgttcggaactaatta 35667913  T
Q  205 attctcacaagagcataaatgtagatctagctagaaatctatctccagacgatagtgtattatttaaatatctctaacccttga---agggccttnnnnn 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||   ||||||||         
T  35667914 attctcacaagagcataaatgtagatctagctagaaatctatctccagacgatagtgtattatttaaatctctctaatccttgatttagggccttaaaag 35668013  T
Q  302 nnnggtgcccgatgaggaattccttttcttcttgactttgaacgattaacgggaagcatactttctttgtctccgccttcttcttcctcctcctcgccct 401  Q
       |||||||| ||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35668014 aaaggtgcccgttgaggtattccctttcttcttgaatttgaacgattaacgggaagcatactttctttgtctccgccttcttcttcctcctcctcgccct 35668113  T
Q  402 gattctcttcattttctctatcaacttctgcttcttctagttttcgtttcaga 454  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  35668114 gattctcttcattttctccatcaacttctgcttcttctagttttcgtttcaga 35668166  T

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