View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1719-Insertion-3 (Length: 590)
Name: NF1719-Insertion-3
Description: NF1719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1719-Insertion-3 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 8 - 590
Target Start/End: Complemental strand, 45128221 - 45127648
Alignment:
| Q |
8 |
ccaacacttcctgttgttggatcattgataaaagctggagttaaggtcctaatttacaggtagctagaaatctacaacttttccttctgnnnnnnnnnnn |
107 |
Q |
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| T |
45128221 |
ccaacacttcctgttgttggatcattgataaaagctggagttaaggtcctaatttacaggtagctagaaatctacaacttttccttctgtttttttattt |
45128122 |
T |
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| Q |
108 |
nnnnnnnnnnnctgttgcttgaactatagggttcacacatgtttttt--agtgataaaaataacattacaatgtgcattatcattgctacagtggagatc |
205 |
Q |
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| T |
45128121 |
att--------ctgttgcttgaactatagggttcacacatgttttttttagtgataaaaataacattacaatgtgcattattattgctacagtggagatc |
45128030 |
T |
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| Q |
206 |
aagactcagtgattccactgactggaagcagaaccttagttcaaaaattggctagacaattaggactgaatacaacagttccttacagagtatggtttga |
305 |
Q |
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| T |
45128029 |
aagactcagtgattccactgactggaagcagaaccttagttcaaaaattggctagacaattaggactgaatacaacagttccttacagagtatggtttga |
45127930 |
T |
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| Q |
306 |
aggccaacaggtaaatatatattaattaaataacttgtttgaattgtcgagaaatcactgtcaaaattttggctccattttataagagtccagagagcct |
405 |
Q |
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| T |
45127929 |
aggccaacaggtaaatatatattaattaaataacttgtttgaattgttgagaaatcactgtcaaaattttggctccattttataagagtccagagagcct |
45127830 |
T |
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| Q |
406 |
tcagtggagtcactagggatcactgactactctttcccccaaagtggaaagatcctttcccattgggctttagtctttgtcaattgggctctgtgcagaa |
505 |
Q |
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| T |
45127829 |
tcagtggagt----------cactgactactctttcccccaaagtgtaaagatcctttcccattgggctttagtctttgtcaattgggctctgtgcagaa |
45127740 |
T |
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| Q |
506 |
ctgtagattttattctttgtttgaactttattatgtctgtattcaca-------acaacagtataacgaaagcatctattcagtaatatcta |
590 |
Q |
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| T |
45127739 |
ctgtagattttattctttgtttgaactttattatgtctgtattcacaacaacagacaacagtataacgaaagcatctattcagtaatatcta |
45127648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 199 - 318
Target Start/End: Complemental strand, 40279918 - 40279799
Alignment:
| Q |
199 |
ggagatcaagactcagtgattccactgactggaagcagaaccttagttcaaaaattggctagacaattaggactgaatacaacagttccttacagagtat |
298 |
Q |
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| T |
40279918 |
ggagatcaagattcagtaattccactcactggtagccgcaccttggttcacaagctagcaagacaactagcacttaaaacaacaatcccttacagggtat |
40279819 |
T |
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| Q |
299 |
ggtttgaaggccaacaggta |
318 |
Q |
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| T |
40279818 |
ggtttgaaggtcatcaggta |
40279799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 7 - 69
Target Start/End: Complemental strand, 40280065 - 40280003
Alignment:
| Q |
7 |
accaacacttcctgttgttggatcattgataaaagctggagttaaggtcctaatttacaggta |
69 |
Q |
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| T |
40280065 |
accaacactccatgttgttggatcaatcataaaagctggagttagggtattaatttataggta |
40280003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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