View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17190_high_13 (Length: 278)
Name: NF17190_high_13
Description: NF17190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17190_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 13 - 261
Target Start/End: Complemental strand, 54793484 - 54793238
Alignment:
| Q |
13 |
aatatattcacagcagaacaacaaaatatcaaaattcttatttcctaaagaaaggtagagatgatcttcacgcgggtactttataacttagcatgaagaa |
112 |
Q |
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| T |
54793484 |
aatatattcacagcagaacaacaaaatatcaaaattcttatttcctaaagaaaggtagagatgatcttcacgcgggtactttataacttagcatgaagaa |
54793385 |
T |
|
| Q |
113 |
atctatgcaacttgttagttggttatagttaagaatacaagaagataaaggttaaaaggatgcaacaagtatgagtaacatttctttttatatagaattn |
212 |
Q |
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| T |
54793384 |
atctatgcaacttgttagttggttatagttaagaatacaagaagataaaggttaaaaggatgcaacaagtatgagtaacatttctttttatatagaatt- |
54793286 |
T |
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| Q |
213 |
nnnnnnnnntgagataaagtaaatgagatcatacctttatcaactcttt |
261 |
Q |
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| T |
54793285 |
-aaaaaaaatgagataaagtaaatgagatcatacctttatcaactcttt |
54793238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 13 - 246
Target Start/End: Complemental strand, 52286156 - 52285921
Alignment:
| Q |
13 |
aatatattcacagcagaacaacaaaatatcaaaattcttatttcctaaagaaaggtagagatgatcttcacgcgggtactttataacttagcatgaagaa |
112 |
Q |
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| T |
52286156 |
aatatactcacagcagaacaacagaatatcaaaattcttatttcctaaagaaaggtggagacaatcttcacg-aggtactttataagttagcgtgaagaa |
52286058 |
T |
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| Q |
113 |
atctatgcaac----ttgttagttggttatagttaagaatacaagaagataaaggttaaaaggatgcaacaagtatgagtaacatttctttttatataga |
208 |
Q |
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| T |
52286057 |
atatatgcaccttgtttgttagttggttatcgttaagaatacaataagataaaggttaaaaggatgcaagaa-tatgagtaacatttcttttgatataga |
52285959 |
T |
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| Q |
209 |
attnnnnnnnnnntgagataaagtaaatgagatcatac |
246 |
Q |
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| T |
52285958 |
attaaaataaaatcgagataaagtaaatgagatcatac |
52285921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 13 - 206
Target Start/End: Complemental strand, 801344 - 801152
Alignment:
| Q |
13 |
aatatattcacagcagaacaacaaaatatcaaaattcttatttcctaaagaaaggtagagatgatcttcacgcgggtacttt-ataacttagcatgaaga |
111 |
Q |
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|||||||| |||||||||||| |||||| |||| |||||||||||||||| |||| ||||| ||||||| || |||||||| | | | ||||||||||| |
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| T |
801344 |
aatatatttacagcagaacaatgaaatataaaaaatcttatttcctaaagagaggtggagataatcttcatgccggtacttttacagcatagcatgaaga |
801245 |
T |
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| Q |
112 |
aatctatgcaacttgttagttggttatagttaagaatacaagaagataaaggttaaaaggatgcaacaagtatgagtaacatttctttttatata |
206 |
Q |
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| T |
801244 |
aatctatgcaccttgttagttggttatctttaagaatacaagaagataaaggttcaaaggatgcaacaagtgtga--aacatttctttttatata |
801152 |
T |
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