View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17190_high_6 (Length: 489)
Name: NF17190_high_6
Description: NF17190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17190_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 20 - 477
Target Start/End: Complemental strand, 14869173 - 14868716
Alignment:
| Q |
20 |
agtgtcggcgttgaagctttccattccttgtgccaaaccaggtacttgtggaaacatgacaacatgagttctaatgggacgaccgcggctagaatcgcgg |
119 |
Q |
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| T |
14869173 |
agtgtcggcgttgaagctttccattcctcgtgccaaaccaggtacttgtggaaacatgacaacatgagttctaatgggacgaccgcggctagaatcgcgg |
14869074 |
T |
|
| Q |
120 |
tcgattgaggtttgaaaaatggctgcatttgatggtgtggtgattatggttacatccacaccatgcatagcaaaaagccttgctatgtctactacgaaaa |
219 |
Q |
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| T |
14869073 |
tcgattgaggtttgaaaaatggctgcatttgatggtgtggtgattatggttacatccacaccatgcatagcaaaaagccttgctatgtctactacaaaaa |
14868974 |
T |
|
| Q |
220 |
tgaggtgactttttgatataaaaggaagaaaaacagcttttagcattgtttcttcttcaactttgactccaagggattccatcagaatctggtttttgtt |
319 |
Q |
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| T |
14868973 |
tgaggtgactttttgatataaaaggaagaaaaacagcttttagcattgtttcttcttcaactttgactccaagggattccatcagaatctggtttttgtt |
14868874 |
T |
|
| Q |
320 |
ttaaggcaaaggttgataagaggaagagaaaatgtgnnnnnnncttacccnnnnnnnnnnnnnnnnnttctagtcagtgcataatcaaagacaaaagaga |
419 |
Q |
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| T |
14868873 |
ttaaggcaaaggttgataagaggaagagaaaatgtgtttttttcttaccctgatgatgatgatgatgttctagtcagtgcataatcaaagacaaaagaga |
14868774 |
T |
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| Q |
420 |
gcatgcatgaatgaatgaattttggttacagaacatgaatgaattggtatattcttgg |
477 |
Q |
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| T |
14868773 |
gcatgcatgaacgaatgaattttggttacagaacatgaatgaattggtatattattgg |
14868716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 20 - 323
Target Start/End: Original strand, 16909495 - 16909800
Alignment:
| Q |
20 |
agtgtcggcgttgaagctttccattccttgtgccaaaccaggtacttgtggaaacatgacaacatgagttctaatgggacgaccgcggctagaatcgcgg |
119 |
Q |
| |
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|||||| || ||||| |||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||| |||||||| || |||||| || |
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| T |
16909495 |
agtgtcagcattgaaactttccattccttgtggcaaaccaggtacttgtggaaacttgacaatgtgagttctaatggaccgaccgcgacttgaatcgtgg |
16909594 |
T |
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| Q |
120 |
tcgattgaggtttgaaaaatggctgcatttgatggtgtggtgattatggttacatccacaccatgcatagcaaaaagccttgctatgtctactacgaaaa |
219 |
Q |
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| T |
16909595 |
tcgatggaggtttgaaaaatggctgcatttgctggtgtggtgattatggtaacatccacattatgcatagcaaaaagccttgctatgtctactacgaaaa |
16909694 |
T |
|
| Q |
220 |
tgaggtgac--tttttgatataaaaggaagaaaaacagcttttagcattgtttcttcttcaactttgactccaagggattccatcagaatctggtttttg |
317 |
Q |
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||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| || |||| ||||||||| |||| | | ||||| |
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| T |
16909695 |
tgaggtgactttttttgatataaagggaagaaaaacagcttttaacattgtttcttcttcaactttcacaccaaaggattccattagaaattagattttg |
16909794 |
T |
|
| Q |
318 |
ttttaa |
323 |
Q |
| |
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|||||| |
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|
| T |
16909795 |
ttttaa |
16909800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 156 - 208
Target Start/End: Complemental strand, 12611293 - 12611241
Alignment:
| Q |
156 |
gtggtgattatggttacatccacaccatgcatagcaaaaagccttgctatgtc |
208 |
Q |
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|||||||||||||| | ||||||||||||||||||||| || ||||| ||||| |
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| T |
12611293 |
gtggtgattatggtgatatccacaccatgcatagcaaatagtcttgccatgtc |
12611241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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