View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17190_high_9 (Length: 379)
Name: NF17190_high_9
Description: NF17190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17190_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 22 - 364
Target Start/End: Complemental strand, 10476855 - 10476513
Alignment:
| Q |
22 |
atggctcgtttctccttgccggtcatcctttactccaccgccacttcccgtcgcttctcgtccgactcaatgcaacagcagctgcgcaacgtctggatct |
121 |
Q |
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| T |
10476855 |
atggctcgtttctccttgccggtcctcctttactccaccgccacttcccgtcgcttctcgtccgactcaatgcaacagcagctgcgcaacgtctggatct |
10476756 |
T |
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| Q |
122 |
cggggctccttgacccttccaaggtgagggtgacggagaggtactggttatacacgggggagattgataagatgatagaagctaggaaagaaaccgagaa |
221 |
Q |
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| T |
10476755 |
cggggctccttgacccttccaaggtgagggtgacggagaggtactggttatacacgggggatattgataagatgatagaagctaggaaagaaaccgagaa |
10476656 |
T |
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| Q |
222 |
aagagacaagtactatgagtctattgtaaaagaagagtcgtggttgaatcagggtaaaaaacgagatagccatagacattttaaatggcttatgaatggt |
321 |
Q |
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| T |
10476655 |
aagagacaagtactatgagtctattgtaaaagaagagtcgtggttgaatcagggtaaaaaacgagatagccgtagacattttaaatggcttatgaatggt |
10476556 |
T |
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| Q |
322 |
ccaacttccgattctacttcctcagatctcactttcttcaact |
364 |
Q |
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| T |
10476555 |
ccaacttccgattctacttccgcagatctcactttcttcaact |
10476513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 113 - 168
Target Start/End: Complemental strand, 10509399 - 10509344
Alignment:
| Q |
113 |
tctggatctcggggctccttgacccttccaaggtgagggtgacggagaggtactgg |
168 |
Q |
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| T |
10509399 |
tctggatctctggtctccttgatccttccaaggtgaggatgactgagagatactgg |
10509344 |
T |
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