View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17190_low_1 (Length: 961)
Name: NF17190_low_1
Description: NF17190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17190_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 401; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 101 - 585
Target Start/End: Original strand, 3929038 - 3929520
Alignment:
| Q |
101 |
ggtaactttataccaagactgtcataatattttaacatctataactcattttgatggtactgttatattgataggaagctctagaatatagggaacgaat |
200 |
Q |
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| T |
3929038 |
ggtaactttataccaagactgtcataatattttaacatctataactcattttgatggtactgttatattgatagtaagctctagaatatagggagcgaat |
3929137 |
T |
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| Q |
201 |
cgacagtggtggaaggatggaacgacattaatcaacaggggttaaatgaaggatggacgtaaaatttgacaggatcaaatgctaatttgacatatttgag |
300 |
Q |
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| T |
3929138 |
tgacagtggtggaaggatggaatgacattaatcaacaggcgttaactgaaggatggaagtaaaatttgacaggatcaaatactaatttgacatatttgag |
3929237 |
T |
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| Q |
301 |
agcgccctacaaagtcaaagacaagcttgatgatttactcaacaattatgtcttgagaattgcctctacactatacaaaagctattgagaatcaaaatac |
400 |
Q |
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| T |
3929238 |
agcgccctacaaagtcaaagacaagcttggtgatttactcaacaattatgtcttgagaattgcctctacactatacaaaagctattgagaatcaaaatac |
3929337 |
T |
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| Q |
401 |
attagatactctttctttcnnnnnnngtatcagtacatttgatagccttgggagaggcttatcacaccattgccaaagctcaattactgtatatttcagt |
500 |
Q |
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| T |
3929338 |
attagatactc--tctttctttttttgtatcagtacatttgatagccttgggagaggcttatcacaacattgccaaagctcaattagtgtatatttcagt |
3929435 |
T |
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| Q |
501 |
gttgcctattaattaatcattgcataccaggtttttattgctaaattgatttagtgtagtaaatttgactacctgataaatgatt |
585 |
Q |
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| T |
3929436 |
gttgcctattaactaatcaatgcataccaggtttttattgctaaattgatttagtgtagtaaatttgactacctgataaatgatt |
3929520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 623 - 943
Target Start/End: Original strand, 3929628 - 3929947
Alignment:
| Q |
623 |
atatccatagacaacttcgatattaaaattgaagcaaaatttcccaacttcaaagctaaaaagcaacaaattagttactatgatcaaattttcatcaaat |
722 |
Q |
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| T |
3929628 |
atatccatagacaacttcaatattaaaattgaagcaaaatttcccaacgtcaaagctaaaaagcaacaaattagttactatgatcgaattttcatcaaat |
3929727 |
T |
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| Q |
723 |
caagttaaacaaaattgaaaattagtttgaacaattaaatgcaatcaatttgattaagtatcatagattcaacagatcaattcaaaattcaagattcact |
822 |
Q |
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| T |
3929728 |
caagttaaacaaaattgaaaattagtttgaacaattaaatgcaatcaatttgattaagtatcatagattcaacagatcaattcaaaattcaagattcact |
3929827 |
T |
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| Q |
823 |
ttttccaagagaaattagattcaaatcctaacnnnnnnnntaaaactctatcatctaaacatctaaagaaaataactgtgaatccatgcaatgtaatcaa |
922 |
Q |
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| T |
3929828 |
ttttccaagagaaattagattcaaatcctaac-aacaaaataaaactctatcatctaaacatctaaagaaaataactgtgaatccatgcaatgtaatcaa |
3929926 |
T |
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| Q |
923 |
atcttctaagccctttcgcct |
943 |
Q |
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| T |
3929927 |
atcttctaagccctttcgcct |
3929947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 57
Target Start/End: Original strand, 3928994 - 3929033
Alignment:
| Q |
18 |
gtatacagttttgatagtcgattctggaactggtagagca |
57 |
Q |
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| T |
3928994 |
gtatacagttttgatagtcgattctggaactggtagagca |
3929033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 238
Target Start/End: Original strand, 3914729 - 3914802
Alignment:
| Q |
165 |
atattgataggaagctctagaatatagggaacgaatcgacagtggtggaaggatggaacgacattaatcaacag |
238 |
Q |
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| T |
3914729 |
atattgatagtaagctctaagctataggaaccaaattgacagtagcggaaggatggaacgacattaatcgacag |
3914802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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