View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17190_low_11 (Length: 376)
Name: NF17190_low_11
Description: NF17190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17190_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 359
Target Start/End: Complemental strand, 2794177 - 2793819
Alignment:
| Q |
1 |
tcaacatccttctcatcatcatcttcattctcttcaaattccactgcaacaccgtcaaaagaatcaaaaccaccctcaacatcctcaaactccagaaaat |
100 |
Q |
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| T |
2794177 |
tcaacatccttctcatcatcatcttcattctcttcaaattccactgcaacaccgtcaaaagaatcaaaaccaccctccacatcctcaaactccagaaaat |
2794078 |
T |
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| Q |
101 |
cagttataacctttccaatcgaaacaaggtgattaaacacagtatcagtgatagggttaagcagtttctcaatgttaatcttcttgtcaccaatagagtc |
200 |
Q |
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| T |
2794077 |
cagttataagctttccaatcgaaacaaggtgattaaacacagtatcagtgatagggttaagcagtttctcaatgttaatcttcttgtcaccaacagagtc |
2793978 |
T |
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| Q |
201 |
gtttttcagaatggaaagaatctcatcagcagcacctctgataatcccaagcggctgaccaccaaaccgctgctggattacactcaacatcgcctcataa |
300 |
Q |
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| T |
2793977 |
gtttttcagaatggaaagaatctcatcagcagcacctctgataatcccaagcggctgaccaccaaaccgctgctggattacactcaacatcgcctcataa |
2793878 |
T |
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| Q |
301 |
gcagcacgagtttccttcgtctttggctcgtaaacaccgtcatcaatggcattgagtac |
359 |
Q |
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| T |
2793877 |
gcagcacgagtttccttcgtctttggctcgtaaacaccgttatcaacggcattgagtac |
2793819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 252 - 345
Target Start/End: Complemental strand, 29261349 - 29261256
Alignment:
| Q |
252 |
cggctgaccaccaaaccgctgctggattacactcaacatcgcctcataagcagcacgagtttccttcgtctttggctcgtaaacaccgtcatca |
345 |
Q |
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| T |
29261349 |
cggctgaccaccaagctgttgctgaatcacactcaacatagcttcataagctgctcttgtctccttcgtcttcggctgataaacaccgtcatca |
29261256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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