View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17190_low_12 (Length: 325)
Name: NF17190_low_12
Description: NF17190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17190_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 128; Significance: 4e-66; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 55 - 308
Target Start/End: Original strand, 14366860 - 14367147
Alignment:
| Q |
55 |
tttactagatgtccatggaagactatacttataagattttataacttcataactttatcgtttcggcagttcagta------------------gtagat |
136 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
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| T |
14366860 |
tttactagatttccatggaagactatacttataagattttataacttcataactttatcgtttcggcggttcagtatacttattgctaaatttagtagat |
14366959 |
T |
|
| Q |
137 |
tgtcattatttcctttttatgacgtggtatacctcatactgaaatttt-gttttgt---------------ttggttaatttaaggatttgtttatttac |
220 |
Q |
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||||| | || |||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||| |
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| T |
14366960 |
tgtcacttttccctttttatgacgtggtatacctcatactggaatttttgttttgtgaaccaaactcgtatttggttaatttaaggatttgtttatttac |
14367059 |
T |
|
| Q |
221 |
ttcaatatttggcaatttaagatgcttcagtcgcctttg-ttatgcaaatagctaccataaaatatagggtaaaagatcatactgtttg |
308 |
Q |
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| T |
14367060 |
ttcaatatttggcaatttaagatgcttcagttgcctttgtttatgc-aatagctaccataaaatatagggtaaaagatcatactgtttg |
14367147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 123; Significance: 4e-63; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 15 - 308
Target Start/End: Complemental strand, 19576739 - 19576398
Alignment:
| Q |
15 |
tcttgaagatactaatcgcttgagaatcaagacaaaattgt-------------ttactagatgtccatggaagactatacttataagattttataactt |
101 |
Q |
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| T |
19576739 |
tcttgaggatactaatcgcctgagaatcaagacaaaattgtggttattttctttttactagatttccatggaagactatacttataagattttataactt |
19576640 |
T |
|
| Q |
102 |
cataactttatcgtttcggcagttcagta------------------gtagattgtcattatttcctttttatgacgtggtatacctcatact-gaaatt |
182 |
Q |
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|||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||| |||||||||||||||||| ||| || |
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| T |
19576639 |
cataactttatcgtttcggcggttcagtatacttattgctaaatttagtagattgtcattttttcctttttatggcgtggtatacctcatactcgaattt |
19576540 |
T |
|
| Q |
183 |
ttgttttgt----------------ttggttaatttaaggatttgtttatttacttcaatatttggcaatttaagatgcttcagtcgcctttg-ttatgc |
265 |
Q |
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| T |
19576539 |
ttgttttgtgaaccaaactcgtatttgggttaatttaaggatttgtttatttacttcaatatttagcaatttaagatgcttcagttgcctttgtttatgc |
19576440 |
T |
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| Q |
266 |
aaatagctaccataaaatatagggtaaaagatcatactgtttg |
308 |
Q |
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| T |
19576439 |
-aatagctaccataaaatatagggtaaaagatcatactgtttg |
19576398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 106; Significance: 5e-53; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 129 - 308
Target Start/End: Complemental strand, 8856208 - 8856012
Alignment:
| Q |
129 |
tagtagattgtcattatttcctttttatgacgtggtatacctcatactgaaattttgttttgt-----------------ttggttaatttaaggatttg |
211 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||| || |||||||||| ||| |||||||||||||||| |
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| T |
8856208 |
tagtagattgtcattatttcctttttatgccgtggtatacctcatactagaactttgttttgtgaaccaaactagtatttttgattaatttaaggatttg |
8856109 |
T |
|
| Q |
212 |
tttatttacttcaatatttggcaatttaagatgcttcagtcgcctttg-ttatgcaaatagctaccataaaatatagggtaaaagatcatactgtttg |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
8856108 |
tttatttacttcaatatttggcaatttaagatgcttcagtcgcctttgtttatgc-aatagctaccataaaatatagggtaaaagatcatactgtttg |
8856012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 55 - 130
Target Start/End: Complemental strand, 8856368 - 8856293
Alignment:
| Q |
55 |
tttactagatgtccatggaagactatacttataagattttataacttcataactttatcgtttcggcagttcagta |
130 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
8856368 |
tttactagatgtccatggaagactatacttataagattttataacttcataactttatcgtttcggcggttcagta |
8856293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 130
Target Start/End: Complemental strand, 8856259 - 8856225
Alignment:
| Q |
96 |
taacttcataactttatcgtttcggcagttcagta |
130 |
Q |
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|||||||||||||||||||||||||| |||||||| |
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| T |
8856259 |
taacttcataactttatcgtttcggcggttcagta |
8856225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 8856421 - 8856381
Alignment:
| Q |
15 |
tcttgaagatactaatcgcttgagaatcaagacaaaattgt |
55 |
Q |
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|||||||| |||||||| | ||||||||||||||||||||| |
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| T |
8856421 |
tcttgaagttactaatcacctgagaatcaagacaaaattgt |
8856381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 101; Significance: 5e-50; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 15 - 119
Target Start/End: Original strand, 26382774 - 26382878
Alignment:
| Q |
15 |
tcttgaagatactaatcgcttgagaatcaagacaaaattgtttactagatgtccatggaagactatacttataagattttataacttcataactttatcg |
114 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26382774 |
tcttgaagatactaatcgtttgagaatcaagacaaaattgtttactagatgtccatggaagactatacttataagattttataacttcataactttatcg |
26382873 |
T |
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| Q |
115 |
tttcg |
119 |
Q |
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||||| |
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| T |
26382874 |
tttcg |
26382878 |
T |
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