View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17190_low_13 (Length: 304)

Name: NF17190_low_13
Description: NF17190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17190_low_13
NF17190_low_13
[»] chr2 (4 HSPs)
chr2 (15-288)||(5829152-5829419)
chr2 (239-288)||(5769029-5769078)
chr2 (239-288)||(27562885-27562934)
chr2 (251-288)||(22142858-22142895)
[»] chr6 (1 HSPs)
chr6 (230-288)||(29326875-29326933)
[»] chr1 (2 HSPs)
chr1 (239-288)||(33815322-33815371)
chr1 (239-288)||(33874792-33874841)
[»] chr3 (1 HSPs)
chr3 (251-288)||(38508487-38508524)


Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 15 - 288
Target Start/End: Original strand, 5829152 - 5829419
Alignment:
Q  15 atgaataaagactatcaattattgattcaaatttgctaaatattaaaatgctgaaatcaatatcttttttacaatttaatttgaataaccaatatgaata 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  5829152 atgaataaagactatcaattattgattcaaatttgctaaatattaaaatgctgaaatcaatatcttttttacaatttaatttgaataaccaatat----- 5829246  T
Q  115 tctataagaagctatgagtgatagactaatcaacagaaacaataaaccagttttaccaattcccttagaatgcactttctcagatgtagaagatcagagg 214  Q
     || ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  5829247 -ctctaagaagttatgagtgatagactaatcaacagaaacactaaaccagttttaccaattcccttagaatgcactttctcggatgtagaagatcagagg 5829345  T
Q  215 aaccgatattggaagtagaaaatagaaatatcttatgatgcacttgaatgaagagctactaatgaagcataaac 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5829346 aaccgatattggaagtagaaaatagaaatatcttatgatgcacttgaatgaagagctactaatgaagcataaac 5829419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 239 - 288
Target Start/End: Complemental strand, 5769078 - 5769029
Alignment:
Q  239 gaaatatcttatgatgcacttgaatgaagagctactaatgaagcataaac 288  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  5769078 gaaatatcttatgatgcgcttgaatgaagagctactaatgaagcataaac 5769029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 239 - 288
Target Start/End: Complemental strand, 27562934 - 27562885
Alignment:
Q  239 gaaatatcttatgatgcacttgaatgaagagctactaatgaagcataaac 288  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  27562934 gaaatatcttatcatgcacttgaatgaaaagctactaatgaagcataaac 27562885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 251 - 288
Target Start/End: Original strand, 22142858 - 22142895
Alignment:
Q  251 gatgcacttgaatgaagagctactaatgaagcataaac 288  Q
    |||||||||||||||| |||||||||||||||||||||    
T  22142858 gatgcacttgaatgaaaagctactaatgaagcataaac 22142895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 230 - 288
Target Start/End: Original strand, 29326875 - 29326933
Alignment:
Q  230 tagaaaatagaaatatcttatgatgcacttgaatgaagagctactaatgaagcataaac 288  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  29326875 tagaaagtagaaatatcttatgatgcagttgaatgaagagctactaatgaagcataaac 29326933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 239 - 288
Target Start/End: Complemental strand, 33815371 - 33815322
Alignment:
Q  239 gaaatatcttatgatgcacttgaatgaagagctactaatgaagcataaac 288  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  33815371 gaaatatcctatgatgcacttgaatgaagagctactaatgaagcataaac 33815322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 239 - 288
Target Start/End: Complemental strand, 33874841 - 33874792
Alignment:
Q  239 gaaatatcttatgatgcacttgaatgaagagctactaatgaagcataaac 288  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  33874841 gaaatatcctatgatgcacttgaatgaagagctactaatgaagcataaac 33874792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 251 - 288
Target Start/End: Original strand, 38508487 - 38508524
Alignment:
Q  251 gatgcacttgaatgaagagctactaatgaagcataaac 288  Q
    |||||||||||||||| |||||||||||||||||||||    
T  38508487 gatgcacttgaatgaaaagctactaatgaagcataaac 38508524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University