View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17190_low_15 (Length: 261)

Name: NF17190_low_15
Description: NF17190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17190_low_15
NF17190_low_15
[»] chr3 (6 HSPs)
chr3 (20-243)||(8166234-8166457)
chr3 (131-202)||(1312940-1313011)
chr3 (143-243)||(27305607-27305709)
chr3 (149-236)||(51352036-51352125)
chr3 (70-137)||(27305519-27305586)
chr3 (137-202)||(54738874-54738939)
[»] chr2 (6 HSPs)
chr2 (131-235)||(12123470-12123576)
chr2 (147-236)||(13121942-13122033)
chr2 (69-137)||(41455210-41455279)
chr2 (69-123)||(12123392-12123447)
chr2 (170-238)||(41446314-41446383)
chr2 (134-186)||(36191142-36191194)
[»] chr7 (4 HSPs)
chr7 (145-236)||(36574415-36574508)
chr7 (146-243)||(23564959-23565061)
chr7 (70-137)||(30843286-30843354)
chr7 (72-135)||(3904275-3904338)
[»] chr8 (7 HSPs)
chr8 (68-225)||(32901987-32902161)
chr8 (70-137)||(11711805-11711873)
chr8 (131-229)||(7597799-7597899)
chr8 (70-137)||(29796131-29796198)
chr8 (131-229)||(8153970-8154070)
chr8 (131-192)||(8965568-8965629)
chr8 (143-199)||(3231741-3231797)
[»] chr4 (5 HSPs)
chr4 (131-202)||(44967711-44967782)
chr4 (146-229)||(5207740-5207825)
chr4 (70-125)||(21703693-21703748)
chr4 (167-243)||(29056528-29056606)
chr4 (139-237)||(47038302-47038404)
[»] chr5 (3 HSPs)
chr5 (131-202)||(9049233-9049304)
chr5 (146-191)||(30897636-30897681)
chr5 (94-134)||(32583116-32583156)
[»] chr1 (8 HSPs)
chr1 (70-124)||(37282498-37282552)
chr1 (146-202)||(37282590-37282646)
chr1 (131-229)||(43342194-43342293)
chr1 (137-236)||(5460083-5460184)
chr1 (70-123)||(3461007-3461060)
chr1 (72-136)||(15820596-15820659)
chr1 (69-101)||(16455953-16455985)
chr1 (69-125)||(45655467-45655523)
[»] chr6 (1 HSPs)
chr6 (88-135)||(30683713-30683760)
[»] scaffold0219 (1 HSPs)
scaffold0219 (131-224)||(27326-27421)


Alignment Details
Target: chr3 (Bit Score: 169; Significance: 1e-90; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 20 - 243
Target Start/End: Original strand, 8166234 - 8166457
Alignment:
Q  20 ataccctagcggacatacttacataacaacaattcttgaatt-atattatttgttgtgaattaggactcaaaattacaccaataaatttagacgtgtgga 118  Q
    ||||||||  |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||    
T  8166234 ataccctaatggacatacttacataacaacaattcttgaatttatattatttgttgtgaattaggactcaaaattacaccaataaacttagacctgtgga 8166333  T
Q  119 gcaaaaagaagtagtaacctcaaacaacaacaacaatgacaaacttaaatctaatctagaaatcaagtgtaaaacacaaaaccatgcaaaagataaatag 218  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||| |||||||||||||| |||    
T  8166334 gcaaaaagaagtagtaatctcaaacaacaacaacaatgacaaacttagatctaatctaggaat-aagtgtaaaacacaaaatcatgcaaaagataactag 8166432  T
Q  219 agaagaaaaactaacacactaagaa 243  Q
    ||||||||||||||| |||||||||    
T  8166433 agaagaaaaactaacgcactaagaa 8166457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 131 - 202
Target Start/End: Original strand, 1312940 - 1313011
Alignment:
Q  131 agtaacctcaaacaacaacaacaatgacaaacttaaatctaatctagaaatcaagtgtaaaacacaaaacca 202  Q
    |||||| |||||||||||| | ||| ||||||||| |||||||||||||| |||||||||||||| ||||||    
T  1312940 agtaacatcaaacaacaacgataataacaaacttagatctaatctagaaaccaagtgtaaaacaccaaacca 1313011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 143 - 243
Target Start/End: Original strand, 27305607 - 27305709
Alignment:
Q  143 caacaacaacaatgacaaacttaaatctaatctagaaatcaagtgtaaaacacaaaac--catgcaaaagataaatagagaagaaaaactaacacactaa 240  Q
    ||||||||||||| || ||| || ||||||||||| | | ||||| ||||||||||||  ||  |||||||||||||||||||| |||| ||||||| ||    
T  27305607 caacaacaacaataaccaacctagatctaatctaggagtaaagtgaaaaacacaaaaccacaaacaaaagataaatagagaagagaaacaaacacacaaa 27305706  T
Q  241 gaa 243  Q
    |||    
T  27305707 gaa 27305709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 149 - 236
Target Start/End: Original strand, 51352036 - 51352125
Alignment:
Q  149 caacaatgacaaacttaaatctaatctagaaatcaagtgtaaaacacaaaac--catgcaaaagataaatagagaagaaaaactaacaca 236  Q
    ||||||| |||||| || ||||||||||| |||||| || ||||||||||||  || | |||||||||| |||||||| |||| ||||||    
T  51352036 caacaataacaaacctagatctaatctaggaatcaaatgaaaaacacaaaaccacaagtaaaagataaagagagaagagaaacaaacaca 51352125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 70 - 137
Target Start/End: Original strand, 27305519 - 27305586
Alignment:
Q  70 tgttgtgaattaggactcaaaattacaccaataaatttagacgtgtggagcaaaaagaagtagtaacc 137  Q
    ||||||||||| ||||||||||| ||||||||||| |  || ||||||||||||   |||||||||||    
T  27305519 tgttgtgaattcggactcaaaatcacaccaataaactatgatgtgtggagcaaaggaaagtagtaacc 27305586  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 202
Target Start/End: Original strand, 54738874 - 54738939
Alignment:
Q  137 ctcaaacaacaacaacaatgacaaacttaaatctaatctagaaatcaagtgtaaaacacaaaacca 202  Q
    |||||| || || |||||| |||||||||||| |||||||||||||||| |  || ||||||||||    
T  54738874 ctcaaaaaaaaaaaacaataacaaacttaaatttaatctagaaatcaagggagaagcacaaaacca 54738939  T

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Target: chr2 (Bit Score: 52; Significance: 7e-21; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 131 - 235
Target Start/End: Original strand, 12123470 - 12123576
Alignment:
Q  131 agtaacctcaaacaacaacaacaatgacaaacttaaatctaatctagaaatcaagtgtaaaacacaaaa--ccatgcaaaagataaatagagaagaaaaa 228  Q
    ||||||||||||||||||||||||| |||||| || ||||||||||||||||||||| |||| ||||||   || |||||||||||| ||| |||| |||    
T  12123470 agtaacctcaaacaacaacaacaataacaaacctatatctaatctagaaatcaagtgaaaaatacaaaatcacaagcaaaagataaagagataagagaaa 12123569  T
Q  229 ctaacac 235  Q
    | |||||    
T  12123570 caaacac 12123576  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 147 - 236
Target Start/End: Complemental strand, 13122033 - 13121942
Alignment:
Q  147 aacaacaatgacaaacttaaatctaatctagaaatcaagtgtaaaacacaaaac--catgcaaaagataaatagagaagaaaaactaacaca 236  Q
    ||||||||| |||||| || || |||||||||||||||||| |||||| |||||  || |||||||||||| |||||||| |||| ||||||    
T  13122033 aacaacaataacaaacctagatgtaatctagaaatcaagtgaaaaacataaaaccacaagcaaaagataaagagagaagagaaacaaacaca 13121942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 69 - 137
Target Start/End: Complemental strand, 41455279 - 41455210
Alignment:
Q  69 ttgttgtgaattaggactcaaaatt-acaccaataaatttagacgtgtggagcaaaaagaagtagtaacc 137  Q
    ||||||||||||  ||||||||| | ||| ||||||| |||||| |||||||||||| ||||||||||||    
T  41455279 ttgttgtgaattcagactcaaaactcacaacaataaacttagacatgtggagcaaaaggaagtagtaacc 41455210  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 69 - 123
Target Start/End: Original strand, 12123392 - 12123447
Alignment:
Q  69 ttgttgtgaattaggactcaaaa-ttacaccaataaatttagacgtgtggagcaaa 123  Q
    |||||||||||| |||||||||| ||||||| ||||||||| | ||||||||||||    
T  12123392 ttgttgtgaatttggactcaaaaattacacctataaatttatatgtgtggagcaaa 12123447  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 170 - 238
Target Start/End: Complemental strand, 41446383 - 41446314
Alignment:
Q  170 taatctagaaatcaagtgtaaaacacaaaac-catgcaaaagataaatagagaagaaaaactaacacact 238  Q
    |||||||| || ||||| ||||||||||| | || |||||||||||| |||||||| |||| ||||||||    
T  41446383 taatctagtaaccaagtataaaacacaaaccacaagcaaaagataaagagagaagagaaacaaacacact 41446314  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 186
Target Start/End: Original strand, 36191142 - 36191194
Alignment:
Q  134 aacctcaaacaacaacaacaatgacaaacttaaatctaatctagaaatcaagt 186  Q
    |||||||| |||||| |||||| |||||| || ||||||||||| ||||||||    
T  36191142 aacctcaagcaacaataacaataacaaacctagatctaatctaggaatcaagt 36191194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 145 - 236
Target Start/End: Original strand, 36574415 - 36574508
Alignment:
Q  145 acaacaacaatgacaaacttaaatctaatctagaaatcaagtgtaaaacacaaaac--catgcaaaagataaatagagaagaaaaactaacaca 236  Q
    ||||||||||| ||||||||| ||||||||||| ||||||||| ||||||||||||  || | |||||||||| ||||||||||||| ||||||    
T  36574415 acaacaacaataacaaacttagatctaatctaggaatcaagtgaaaaacacaaaaccacaagaaaaagataaagagagaagaaaaacaaacaca 36574508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 243
Target Start/End: Original strand, 23564959 - 23565061
Alignment:
Q  146 caacaacaatgacaaa-cttaaatctaatctagaaatcaa-gtgtaaaacacaaaacc---atgcaaaagataaatagagaagaaaaactaacacactaa 240  Q
    |||||||||| ||||| | || |||||||||||||||||| ||| ||| ||||||| |   | ||||||||||||||||||||| |||| ||||||| ||    
T  23564959 caacaacaataacaaaacctagatctaatctagaaatcaaagtgaaaatcacaaaaaccacaagcaaaagataaatagagaagagaaacaaacacaccaa 23565058  T
Q  241 gaa 243  Q
    |||    
T  23565059 gaa 23565061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 137
Target Start/End: Original strand, 30843286 - 30843354
Alignment:
Q  70 tgttgtgaattaggactcaaaattacaccaataaatttagacgtgtggagcaaaaag-aagtagtaacc 137  Q
    |||||||||||  || ||||||| ||||||||||| ||||| ||||||||||||| | |||||||||||    
T  30843286 tgttgtgaattcagaatcaaaatcacaccaataaacttagaagtgtggagcaaaaggaaagtagtaacc 30843354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 72 - 135
Target Start/End: Original strand, 3904275 - 3904338
Alignment:
Q  72 ttgtgaattaggactcaaaattacaccaataaatttagacgtgtggagcaaaaagaagtagtaa 135  Q
    ||||||||| | ||||||||| ||||| ||||||||||| |||||||| |||| || |||||||    
T  3904275 ttgtgaatttgaactcaaaatgacacctataaatttagatgtgtggagtaaaaggaggtagtaa 3904338  T

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Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 68 - 225
Target Start/End: Original strand, 32901987 - 32902161
Alignment:
Q  68 tttgttgtgaattaggactcaaaattacaccaataaatttagacgtgtggagcaaaa-agaagtagtaac---------------ctcaaacaacaacaa 151  Q
    ||||||||||||| ||||||||||| | ||||||||| ||||| ||||||||||||| ||||||||||||               |||||||||||||||    
T  32901987 tttgttgtgaattcggactcaaaatcagaccaataaacttagatgtgtggagcaaaagagaagtagtaactaatatcaaagcaacctcaaacaacaacaa 32902086  T
Q  152 caatgacaaacttaaatctaatctagaaatcaagtgtaaaacacaaaacc--atgcaaaagataaatagagaagaa 225  Q
    |||  |||||| || ||||||||||| || |||||| |||||||||||||  | |||||||||||| |||||||||    
T  32902087 caacaacaaacctagatctaatctaggaaccaagtgaaaaacacaaaaccaaaagcaaaagataaa-agagaagaa 32902161  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 70 - 137
Target Start/End: Original strand, 11711805 - 11711873
Alignment:
Q  70 tgttgtgaattaggactcaaaattacaccaataaatttagacgtgtggagcaaaaag-aagtagtaacc 137  Q
    ||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||| | |||||||||||    
T  11711805 tgttgtgaattcggactcaaaattacaccaataaacttagatgtgtggagcaaaaggaaagtagtaacc 11711873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 131 - 229
Target Start/End: Complemental strand, 7597899 - 7597799
Alignment:
Q  131 agtaacctcaaacaacaacaacaatgacaaacttaaatctaatctagaaatcaagtgtaaaacacaaaaccat--gcaaaagataaatagagaagaaaaa 228  Q
    |||||||| || ||||| ||||||| ||||||||| ||||||| ||| || ||||||||||||||||||| ||   ||||||||||| |||||||| |||    
T  7597899 agtaacctgaagcaacaccaacaataacaaacttagatctaatttaggaaccaagtgtaaaacacaaaacgataaacaaaagataaagagagaagagaaa 7597800  T
Q  229 c 229  Q
    |    
T  7597799 c 7597799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 137
Target Start/End: Original strand, 29796131 - 29796198
Alignment:
Q  70 tgttgtgaattaggactcaaaattacaccaataaatttagacgtgtggagcaaaaagaagtagtaacc 137  Q
    |||||||||||  ||||||| || |||||||||||||| || ||||||||||||| |||||| |||||    
T  29796131 tgttgtgaattcagactcaacatcacaccaataaattttgatgtgtggagcaaaaggaagtaataacc 29796198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 229
Target Start/End: Complemental strand, 8154070 - 8153970
Alignment:
Q  131 agtaacctcaaacaacaacaacaatgacaaacttaaatctaatctagaaatcaagtgtaaaacacaaaa--ccatgcaaaagataaatagagaagaaaaa 228  Q
    ||||||| ||| ||||||||| ||| |||||| || || |||||||| ||| ||||| |||||||||||   ||||||||||||||| | |||||| |||    
T  8154070 agtaaccacaagcaacaacaataataacaaacctagatgtaatctaggaataaagtgaaaaacacaaaattacatgcaaaagataaacaaagaagagaaa 8153971  T
Q  229 c 229  Q
    |    
T  8153970 c 8153970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 131 - 192
Target Start/End: Original strand, 8965568 - 8965629
Alignment:
Q  131 agtaacctcaaacaacaacaacaatgacaaacttaaatctaatctagaaatcaagtgtaaaa 192  Q
    ||||||| ||| ||||||||||||| |||||| || || |||||||| ||||||||| ||||    
T  8965568 agtaaccacaagcaacaacaacaataacaaacctagatttaatctaggaatcaagtgaaaaa 8965629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 199
Target Start/End: Original strand, 3231741 - 3231797
Alignment:
Q  143 caacaacaacaatgacaaacttaaatctaatctagaaatcaagtgtaaaacacaaaa 199  Q
    ||||||||||||| |||||  || || |||||| | |||||||||||||||||||||    
T  3231741 caacaacaacaataacaaatctagatataatcttggaatcaagtgtaaaacacaaaa 3231797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 131 - 202
Target Start/End: Original strand, 44967711 - 44967782
Alignment:
Q  131 agtaacctcaaacaacaacaacaatgacaaacttaaatctaatctagaaatcaagtgtaaaacacaaaacca 202  Q
    ||||||||||| ||||||||||| | | |||| || |||||||||| |||||||||||||||||||||||||    
T  44967711 agtaacctcaagcaacaacaacactaataaacatatatctaatctaaaaatcaagtgtaaaacacaaaacca 44967782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 146 - 229
Target Start/End: Original strand, 5207740 - 5207825
Alignment:
Q  146 caacaacaatgacaaacttaaatctaatctagaaatcaagtgtaaaacacaaaacca--tgcaaaagataaatagagaagaaaaac 229  Q
    ||||||||||  ||||| || ||||||| ||| ||||||||| ||| ||||||||||  ||||| |||||||||||||||| ||||    
T  5207740 caacaacaatatcaaacctagatctaatttaggaatcaagtgaaaagcacaaaaccacatgcaacagataaatagagaagagaaac 5207825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 70 - 125
Target Start/End: Original strand, 21703693 - 21703748
Alignment:
Q  70 tgttgtgaattaggactcaaaattacaccaataaatttagacgtgtggagcaaaaa 125  Q
    ||||||||||| | ||||||||| ||| ||||||| ||||| ||||||||||||||    
T  21703693 tgttgtgaattcgaactcaaaatcacagcaataaacttagatgtgtggagcaaaaa 21703748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 167 - 243
Target Start/End: Complemental strand, 29056606 - 29056528
Alignment:
Q  167 atctaatctagaaatcaagtgtaaaacacaaaac--catgcaaaagataaatagagaagaaaaactaacacactaagaa 243  Q
    ||||||||||| ||||||||| ||||||||||||  ||  ||||||||||| ||| |||| |||| ||||||| |||||    
T  29056606 atctaatctaggaatcaagtgaaaaacacaaaaccacaaacaaaagataaagagaaaagagaaacaaacacaccaagaa 29056528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 237
Target Start/End: Original strand, 47038302 - 47038404
Alignment:
Q  139 caaacaacaacaacaatgacaa-acttaaatctaatctagaaatcaa-gtgtaaaacacaaaaccat--gcaaaagataaatagagaagaaaaactaaca 234  Q
    ||||||| ||||||||| |||| || || ||||||||||| |||||| ||| ||| ||||||||||   |||||||||||| |||||||| |||| ||||    
T  47038302 caaacaataacaacaataacaacacctagatctaatctaggaatcaaagtgaaaagcacaaaaccacaagcaaaagataaagagagaagagaaacaaaca 47038401  T
Q  235 cac 237  Q
    |||    
T  47038402 cac 47038404  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 202
Target Start/End: Original strand, 9049233 - 9049304
Alignment:
Q  131 agtaacctcaaacaacaacaacaatgacaaacttaaatctaatctagaaatcaagtgtaaaacacaaaacca 202  Q
    ||||||| |||  |||||||||||| |||||  |||||||||| ||||||| ||||| ||||||||||||||    
T  9049233 agtaaccacaagaaacaacaacaataacaaatctaaatctaatatagaaattaagtgaaaaacacaaaacca 9049304  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 146 - 191
Target Start/End: Complemental strand, 30897681 - 30897636
Alignment:
Q  146 caacaacaatgacaaacttaaatctaatctagaaatcaagtgtaaa 191  Q
    |||||||||| ||| ||||||||||||||||| || ||||||||||    
T  30897681 caacaacaataacagacttaaatctaatctaggaaccaagtgtaaa 30897636  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 134
Target Start/End: Original strand, 32583116 - 32583156
Alignment:
Q  94 acaccaataaatttagacgtgtggagcaaaaagaagtagta 134  Q
    |||| ||| |||||||| |||||||||||||||||||||||    
T  32583116 acactaattaatttagatgtgtggagcaaaaagaagtagta 32583156  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 70 - 124
Target Start/End: Original strand, 37282498 - 37282552
Alignment:
Q  70 tgttgtgaattaggactcaaaattacaccaataaatttagacgtgtggagcaaaa 124  Q
    ||||||||||| ||||||||||| ||||||||||| ||| | |||||||||||||    
T  37282498 tgttgtgaattcggactcaaaatcacaccaataaacttaaatgtgtggagcaaaa 37282552  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 202
Target Start/End: Original strand, 37282590 - 37282646
Alignment:
Q  146 caacaacaatgacaaacttaaatctaatctagaaatcaagtgtaaaacacaaaacca 202  Q
    |||||||||| |||||| || ||||||||||||||||| ||| ||||| ||||||||    
T  37282590 caacaacaataacaaacctagatctaatctagaaatcaggtgaaaaacgcaaaacca 37282646  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 131 - 229
Target Start/End: Original strand, 43342194 - 43342293
Alignment:
Q  131 agtaacctcaaacaacaacaacaatgacaaacttaaatctaatctagaaatcaagtgtaaaacacaaaaccatgc-aaaagataaatagagaagaaaaac 229  Q
    ||||| || |||||||||||||||| |||||  || ||||||| ||| || ||||| |||| |||||||||| || |||||||||| ||| |||| ||||    
T  43342194 agtaaacttaaacaacaacaacaataacaaatctatatctaatataggaaccaagtataaagcacaaaaccacgcaaaaagataaagagataagagaaac 43342293  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 236
Target Start/End: Complemental strand, 5460184 - 5460083
Alignment:
Q  137 ctcaaacaacaacaacaatgacaaacttaaatctaatctagaaatcaagtgtaaaacacaaaac--catgcaaaagataaatagagaagaaaaactaaca 234  Q
    ||||||||||||||||||  |||||| || ||| ||||||| ||  || |||||| ||||||||  || |||||||||||| |||||| | |||| ||||    
T  5460184 ctcaaacaacaacaacaagaacaaacctagatcgaatctaggaacaaaatgtaaagcacaaaaccacaagcaaaagataaagagagaatagaaacaaaca 5460085  T
Q  235 ca 236  Q
    ||    
T  5460084 ca 5460083  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 70 - 123
Target Start/End: Complemental strand, 3461060 - 3461007
Alignment:
Q  70 tgttgtgaattaggactcaaaattacaccaataaatttagacgtgtggagcaaa 123  Q
    |||| ||||||  |||||||||||||||| ||||||||||| | ||||||||||    
T  3461060 tgttttgaattcagactcaaaattacacccataaatttagatgcgtggagcaaa 3461007  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 136
Target Start/End: Complemental strand, 15820659 - 15820596
Alignment:
Q  72 ttgtgaattaggactcaaaattacaccaataaatttagacgtgtggagcaaaaagaagtagtaac 136  Q
    ||||||||| |||||||||| | |||||||||| ||||| ||||||||||||   ||||||||||    
T  15820659 ttgtgaattcggactcaaaact-caccaataaacttagatgtgtggagcaaaggaaagtagtaac 15820596  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 101
Target Start/End: Complemental strand, 16455985 - 16455953
Alignment:
Q  69 ttgttgtgaattaggactcaaaattacaccaat 101  Q
    |||||||||||| ||||||||||||||||||||    
T  16455985 ttgttgtgaattcggactcaaaattacaccaat 16455953  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 125
Target Start/End: Original strand, 45655467 - 45655523
Alignment:
Q  69 ttgttgtgaattaggactcaaaattacaccaataaatttagacgtgtggagcaaaaa 125  Q
    |||||| ||||| ||||| ||||| ||| ||||||| ||||| ||||||||||||||    
T  45655467 ttgttgcgaattcggacttaaaatcacatcaataaacttagatgtgtggagcaaaaa 45655523  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 88 - 135
Target Start/End: Original strand, 30683713 - 30683760
Alignment:
Q  88 aaaattacaccaataaatttagacgtgtggagcaaaaagaagtagtaa 135  Q
    ||||| ||||| ||||||||||| |||||||||||||| |||||||||    
T  30683713 aaaatcacacccataaatttagatgtgtggagcaaaaaaaagtagtaa 30683760  T

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Target: scaffold0219 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 224
Target Start/End: Original strand, 27326 - 27421
Alignment:
Q  131 agtaacctcaaacaacaacaacaatgacaaacttaaatctaatctagaaatcaagtgtaaaacacaaaac--catgcaaaagataaatagagaaga 224  Q
    ||||||||||| || ||| || ||| ||||||||| |   ||||||| ||||||||| ||||||||||||  || ||||||| |||| ||||||||    
T  27326 agtaacctcaagcagcaaaaataataacaaacttagaagaaatctaggaatcaagtgaaaaacacaaaaccacaagcaaaaggtaaagagagaaga 27421  T

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