View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17190_low_2 (Length: 573)
Name: NF17190_low_2
Description: NF17190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17190_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 20 - 564
Target Start/End: Original strand, 49450204 - 49450748
Alignment:
| Q |
20 |
atttgcatcaggagaaaactcatcttacatatgaagttgtcctgtgtaggtttatataaattaaaaaacaaaactcatccatgagaagtggagttaatag |
119 |
Q |
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| T |
49450204 |
atttgcatcaggagaaatatcatcttgcatatgaagttgtcctgtgtaggtttatataaattaaaaaacaaaactcatccatgagaagtggagttaatag |
49450303 |
T |
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| Q |
120 |
aatgtaaaagcagnnnnnnnnnnnnnnnnnnctttacaacaaatacagttgcacatgcttgtgaaaccagaacaacaagtattaagaccgttttgaacag |
219 |
Q |
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| T |
49450304 |
aatgtaaaagcagaaaaaaagacaaaaaaaactttacaacaaatacagttgcacatgcttgtgaaaccagaacaacaagtattaagaccgttttgaacag |
49450403 |
T |
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| Q |
220 |
ttatctgagnnnnnnnnnnnnnnnnnnngtgatccaaaagctcatccaactcctatagctccaattcaatgggaaacctcccattgtttacaaaactttt |
319 |
Q |
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| T |
49450404 |
ttatctgagaaaaccaaaaaaggaaaaagtgatccaaaagctcatccaactcctatagctccaattcaatgggaaacctcccattgtttacaaaactttt |
49450503 |
T |
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| Q |
320 |
taatctgcacacgtgattaacaactttgtatttttcnnnnnnnnnnnnnnnnnnnnnttccacaacactatcatactaaccatcactcatcatcaatgta |
419 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49450504 |
taatctgcacacgtgattaacaactttgtatttttcaaaaaaataaataaaataatattccacaacactatcatactaaccatcactcatcatcaatgta |
49450603 |
T |
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| Q |
420 |
acaccgacacttatcagattaatggtatgtccgatgttcgacaccgacacaatatcgatacatgtaattagttacattcaatcacttccaattttttaat |
519 |
Q |
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| T |
49450604 |
acaccgacacttatcagattaacggtatgtccgatgttcgacaccgacacaatatcgatacatgtaattagttacattcaatcacttccaattttttaat |
49450703 |
T |
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| Q |
520 |
cacttcaattattaccagagtcatggtgtctatgtcaagaataat |
564 |
Q |
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| T |
49450704 |
cacttcaattattaccagagtcgtggtgtctatgtcaagaataat |
49450748 |
T |
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