View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17190_low_4 (Length: 550)
Name: NF17190_low_4
Description: NF17190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17190_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 502; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 16 - 537
Target Start/End: Original strand, 21371331 - 21371852
Alignment:
| Q |
16 |
gataccacagccaaatttgcattaccagttgattctgaacacaaatcgaaagttttcaaactcttttcaatggctaaccctcacatgagaaccttccatt |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21371331 |
gataccacagccaaatttgcattaccagttgattctgaacacaaatccaaagttttcaaactcttttcaatggctaaccctcacatgagaaccttccatt |
21371430 |
T |
|
| Q |
116 |
tatcatggatatctttcttcacctgtttcgtatcgacattcgcggcagcacctttagtcccgatcatccgggacaaccttaacctcacaaagtccgacgt |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
21371431 |
tatcatggatatctttcttcacctgtttcgtctcgacattcgcggcagcacctttagtcccgatcatccgggacaaccttaacctcacaaaatccgacgt |
21371530 |
T |
|
| Q |
216 |
tggtaacgccggagtcgcttcggtttcaggtagtatattctcaaggcttgcaatgggtgcaatttgtgacctattaggtccacgttatggttgtgcattc |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
21371531 |
tggtaacgccggagtcgcttcggtttcaggtagtatattctcaaggcttgcaatgggtgcaatttgtgacctattaggtccgcgttatggttgtgcattc |
21371630 |
T |
|
| Q |
316 |
cttataatgctaacagcaccaacagtgttttgtatgtcatttgttgaaaatgctgctggttatatagcagttaggtttatgattggtttctctttggcaa |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21371631 |
cttataatgctaacagcaccaacagtgttttgtatgtcatttgttgaaaatgctgctggttatatagcagttaggtttatgattggtttctctttggcaa |
21371730 |
T |
|
| Q |
416 |
catttgtttcatgtcaatattggatgagtacaatgtttaatagtaaaattattggacttgctaatggtactgctgctggttggggtaatatgggtggtgg |
515 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21371731 |
catttgtttcatgtcaatattggatgagtactatgtttaatagtaaaattattggacttgctaatggtactgctgctggttggggtaatatgggtggtgg |
21371830 |
T |
|
| Q |
516 |
ggccactcagcttattatgcct |
537 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
21371831 |
ggccactcagcttattatgcct |
21371852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 16 - 537
Target Start/End: Complemental strand, 21386226 - 21385705
Alignment:
| Q |
16 |
gataccacagccaaatttgcattaccagttgattctgaacacaaatcgaaagttttcaaactcttttcaatggctaaccctcacatgagaaccttccatt |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21386226 |
gataccacagccaaatttgcattaccagttgattctgaacacaaatccaaagttttcaaactcttttcaatggctaaccctcacatgagaaccttccatt |
21386127 |
T |
|
| Q |
116 |
tatcatggatatctttcttcacctgtttcgtatcgacattcgcggcagcacctttagtcccgatcatccgggacaaccttaacctcacaaagtccgacgt |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
21386126 |
tatcatggatatctttcttcacctgtttcgtctcgacattcgcggcagcacctttagtcccgatcatccgggacaaccttaacctcacaaaatccgacgt |
21386027 |
T |
|
| Q |
216 |
tggtaacgccggagtcgcttcggtttcaggtagtatattctcaaggcttgcaatgggtgcaatttgtgacctattaggtccacgttatggttgtgcattc |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
21386026 |
tggtaacgccggagtcgcttcggtttcaggtagtatattctcaaggcttgcaatgggtgcaatttgtgacctattaggtccgcgttatggttgtgcattc |
21385927 |
T |
|
| Q |
316 |
cttataatgctaacagcaccaacagtgttttgtatgtcatttgttgaaaatgctgctggttatatagcagttaggtttatgattggtttctctttggcaa |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21385926 |
cttataatgctaacagcaccaacagtgttttgtatgtcatttgttgaaaatgctgctggttatatagcagttaggtttatgattggtttctctttggcaa |
21385827 |
T |
|
| Q |
416 |
catttgtttcatgtcaatattggatgagtacaatgtttaatagtaaaattattggacttgctaatggtactgctgctggttggggtaatatgggtggtgg |
515 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21385826 |
catttgtttcatgtcaatattggatgagtactatgtttaatagtaaaattattggacttgctaatggtactgctgctggttggggtaatatgggtggtgg |
21385727 |
T |
|
| Q |
516 |
ggccactcagcttattatgcct |
537 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
21385726 |
ggccactcagcttattatgcct |
21385705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 3e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 365 - 506
Target Start/End: Complemental strand, 48674302 - 48674164
Alignment:
| Q |
365 |
atgctgctggttatatagcagttaggtttatgattggtttctctttggcaacatttgtttcatgtcaatattggatgagtacaatgtttaatagtaaaat |
464 |
Q |
| |
|
||||| |||| | ||||||||||||||| ||||||||||||||||||||||| |||||||| | ||||||||||||||| ||||||||||| || || |
|
|
| T |
48674302 |
atgcttctggatgtatagcagttaggttcatgattggtttctctttggcaacttttgtttcttaccaatattggatgagt---atgtttaataggaagat |
48674206 |
T |
|
| Q |
465 |
tattggacttgctaatggtactgctgctggttggggtaatat |
506 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
48674205 |
tattggacttgttaatgggactgctgctggttggggtaatat |
48674164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 301 - 458
Target Start/End: Original strand, 36199810 - 36199965
Alignment:
| Q |
301 |
tatggttgtgcattccttataatgctaacagcaccaacagtgttttgtatgtcatttgttgaaa-atgctgctggttatatagcagttaggtttatgatt |
399 |
Q |
| |
|
||||||||||| || |||||||||||| | || ||||||| ||||||||| |||||| |||| ||||| |||| ||||||| ||||||||| |||||| |
|
|
| T |
36199810 |
tatggttgtgctttacttataatgctatctgctccaacag-gttttgtatttcattt--tgaatgatgcttctggatatatagtagttaggttcatgatt |
36199906 |
T |
|
| Q |
400 |
ggtttctctttggcaacatttgtttcatgtcaatattggatgagtacaatgtttaatag |
458 |
Q |
| |
|
||||| ||||| ||||| |||||||| || |||||| ||| ||||| | ||||||||| |
|
|
| T |
36199907 |
ggtttgtctttagcaacttttgtttcttgccaatatcggacgagtaagacgtttaatag |
36199965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 448 - 506
Target Start/End: Complemental strand, 691479 - 691421
Alignment:
| Q |
448 |
atgtttaatagtaaaattattggacttgctaatggtactgctgctggttggggtaatat |
506 |
Q |
| |
|
||||||||| | || ||||||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
691479 |
atgtttaattggaagattattggacttgtcaatgggactgctgctggttggggtaatat |
691421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 448 - 506
Target Start/End: Complemental strand, 693271 - 693213
Alignment:
| Q |
448 |
atgtttaatagtaaaattattggacttgctaatggtactgctgctggttggggtaatat |
506 |
Q |
| |
|
||||||||||| | ||| ||||||||| |||||| |||||||||||| |||||||||| |
|
|
| T |
693271 |
atgtttaataggaggattgttggacttgttaatgggactgctgctggtcggggtaatat |
693213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University