View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17190_low_5 (Length: 534)
Name: NF17190_low_5
Description: NF17190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17190_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 420
Target Start/End: Original strand, 19166441 - 19166879
Alignment:
| Q |
1 |
aagcgtgagggagctgcgacggttgtaaggggaagaagcggggagggagaaaaagtgtgaggttcaggaaaggcgtggtgagggataacggtgacagtgg |
100 |
Q |
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| T |
19166441 |
aagcgtgagggagctgcgacggttgtaaggggaagaagcggggagggagaaaaagtgcgaggttcaggaaaggcgtggtgagggataacggtgatagtgg |
19166540 |
T |
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| Q |
101 |
agctgagaaggaggttcggatgggg-tatgatgggcagcagacacagttattgaaggagggtgccggagggatggcagttccaaagaacaaggaagtcgt |
199 |
Q |
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| T |
19166541 |
ggctgagaaggaggttctgatgggggtatgatgggcagcagacacggttattgaaggagggtgccggagggatggcagttccaaagaacaaggaagtcgt |
19166640 |
T |
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| Q |
200 |
cgtccttactatt---------------------aaatccgtcgaattggatgaggatttggaacaacctgagaactttgtactgactggttcagagggc |
278 |
Q |
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| T |
19166641 |
cgtccttactattgctgacgacgggaaggttattaaatccgtcgatttggatgaggatttggaacaacctgagaactttgtactgactggttcagagggc |
19166740 |
T |
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| Q |
279 |
aatttgattaataagggggtgattgagtaccagtttgctgaagaagacagagattgggccggttcaggtttggtggcaacggttagcacgaggaaacgtt |
378 |
Q |
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| T |
19166741 |
aatttgattaataagggggtgattgagtaccagtttgctgaagaagacagagattgggccggttcaggtttggtggcaacggttagcacgaggaaacgtt |
19166840 |
T |
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| Q |
379 |
ggtatcaatacagcaacgtgtggaggatgcggggtttgatac |
420 |
Q |
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| T |
19166841 |
ggtatcaata---caacgtgtggaggatgcggggtttgatac |
19166879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 400 - 516
Target Start/End: Original strand, 19166899 - 19167015
Alignment:
| Q |
400 |
ggaggatgcggggtttgatacgttgccgtgataatggtgatgttttacaagtatttaatgatgctgctgannnnnnnggattgtttcttaccgatgtgca |
499 |
Q |
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| T |
19166899 |
ggaggatgcggggtttgatacgttgccgtgataatggtgatgttttacaagtttttaatgatgctgctgatttttttggattgtttcttaccgatgtgca |
19166998 |
T |
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| Q |
500 |
taaatggacgtcgaaag |
516 |
Q |
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| T |
19166999 |
taaatggacgtcgaaag |
19167015 |
T |
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