View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17190_low_8 (Length: 461)
Name: NF17190_low_8
Description: NF17190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17190_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 20 - 442
Target Start/End: Original strand, 55015156 - 55015574
Alignment:
| Q |
20 |
tgcactactgtaatgnnnnnnnctttcttgaatttaacaagaatagagtgagtgtgtcattgtggttgtttgttaattgtcttcaagttagccacgaagc |
119 |
Q |
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| T |
55015156 |
tgcactactgtaatgtttttttctttcttgaatttaacaagaatagagtgagtgtgtcattgtggttgtttgttaattgtcttcaagttagccacgaagc |
55015255 |
T |
|
| Q |
120 |
tttttgttttgattgtgcgttatactaacttctttttaacttattggcgtgaagttcttatattagtttgattgatcaaccttagtggagtctcccctta |
219 |
Q |
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| T |
55015256 |
tttttgttttgattgtgcgttatactaacttctttttaacttattggtgtgaagttcttatattagtttgattgatcaaccttagtggagtctcccctta |
55015355 |
T |
|
| Q |
220 |
cgaatggttaatactcaaataaataaataaacattaactaagacttgagatttaaactaaagttctaatcagaccaacctaaagttggtatatgcatatg |
319 |
Q |
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| T |
55015356 |
caaatggttaatactc----aaataaataaacattaactaagacttgagatttaaactaaagttctaatcagaccaacctaaagttggtatatgcatatg |
55015451 |
T |
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| Q |
320 |
catacttccgtactgctattgaaagtatttttcggtgtcgagttgagccttatgatcttgagggaatttctagtgtttgacccatatgcgcnnnnnnnng |
419 |
Q |
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||||||||| |||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| | |
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| T |
55015452 |
catacttcctcactgctattgaaagtatttttcagtgttgagttgagccttatgctcttgagggaatttctagtgtttgacccatatgcgcaaaaaaaag |
55015551 |
T |
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| Q |
420 |
taatactttttgaaagtactatt |
442 |
Q |
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| T |
55015552 |
taatactttttgaaagtactatt |
55015574 |
T |
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