View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17190_low_9 (Length: 457)
Name: NF17190_low_9
Description: NF17190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17190_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 146; Significance: 1e-76; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 56 - 316
Target Start/End: Original strand, 21125158 - 21125401
Alignment:
| Q |
56 |
atacattagtctttatctttatgctagcnnnnnnnngttactctttatgctagtttaatataatagatatgtataaaaaagaaatagtgttgattttttg |
155 |
Q |
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| T |
21125158 |
atacattagtctttgtctttatgctagcttttttttgttactctttatgctagtttaatataatagatatgtataaaaaa-aaatagtgttgattttttg |
21125256 |
T |
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| Q |
156 |
gatggagtgtgttaattgtcttttaatacaaaaatatgcgggttccaatcaaatttcatgacaaatatgatgagtacatacccaatcaaatt-caatggt |
254 |
Q |
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| T |
21125257 |
gatggagtgtgttaattgtcttttaagacagaaatatg-----------------tcatgacaaatatgatgagtacatacccaatcaaatttcaatggt |
21125339 |
T |
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| Q |
255 |
atagttgtcttcatcaaatttgattaccattctatctcaaagaggagaaatcgtcctctccc |
316 |
Q |
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| T |
21125340 |
atagttgtcttcatcaaatttgatttccattctatctcaaggaggagaaatcgtcctctccc |
21125401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 367 - 441
Target Start/End: Original strand, 21125455 - 21125529
Alignment:
| Q |
367 |
ccttcacaccaaacacacataagaaaatagttgacctaatgagaaatcttagttgcacatatctcatctcttaac |
441 |
Q |
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| T |
21125455 |
ccttcacaccaaacacacataagaaaataggtgacctaatgagaaatcttagttgcacatatctcatctcttaac |
21125529 |
T |
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