View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17191_high_1 (Length: 445)
Name: NF17191_high_1
Description: NF17191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17191_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 377; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 6 - 431
Target Start/End: Original strand, 29053421 - 29053845
Alignment:
| Q |
6 |
actattacatgcccatgagaaaataaaagaagaattttgctcaattaagagaccaatattgcaaattgagacatcaattgaaaagttagaaacaccctta |
105 |
Q |
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| T |
29053421 |
actattacatggccatgagaaaataaaagaagaattttgctcaattgagagaccaatattgcaaattgagacatcaattgaaaagttagaaacaccctta |
29053520 |
T |
|
| Q |
106 |
caatcaacaaatccatcacctacatccatgttacctaataaaaacaagcaatatacaataaaaatatctccatcaattactatgaaaacgatatcattcg |
205 |
Q |
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| T |
29053521 |
caatcaacaactc-atcacctacatccatgttacctaataaaaacaagcaatatacaataaaaacatctccatcaattactatgaaaacgatatcattcg |
29053619 |
T |
|
| Q |
206 |
aagaactagataagtgaatgggaatttgatgcacttgataaagatcaacaccccatgaattgactcttgttgacccactgggaaaaagaccaacattact |
305 |
Q |
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| T |
29053620 |
aagaactagataagtgaatgggaatttgatgcacttgataaagatcaactccccatgaattgactcttgttgacccactgggaaaaagaccaacattact |
29053719 |
T |
|
| Q |
306 |
catgttgtaaaaagagtgnnnnnnntgttatgtgtattaggaaggagtgtgacactgtacgtgtaactcatataccagacaacttatccttaactaggtt |
405 |
Q |
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| T |
29053720 |
catgttgtaaaaagagtgaaaaaaatgttatgtgtattaggaaggagtgtgacactgtacgtgtaactcatataccagacaacttatccttaactaggtt |
29053819 |
T |
|
| Q |
406 |
gtctctcaagttcagttaacgaatgt |
431 |
Q |
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| T |
29053820 |
gtctctcaagttcagttaacgaatgt |
29053845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 6 - 212
Target Start/End: Original strand, 29050200 - 29050406
Alignment:
| Q |
6 |
actattacatgcccatgagaaaataaaagaagaattttgctcaattaagagaccaatattgcaaattgagacatcaattgaaaagttagaaacaccctta |
105 |
Q |
| |
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||||||||||||| ||||||||| |||||||||||| || ||| ||||||||| || ||||||||| || |||||||||||| ||||||||||||| |
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| T |
29050200 |
actattacatgccattgagaaaatgaaagaagaatttcattctattgagagaccaaagttccaaattgaggcaccaattgaaaagtcagaaacaccctta |
29050299 |
T |
|
| Q |
106 |
caatcaacaaatccatcacctacatccatgttacctaataaaaacaagcaatatacaataaaaatatctccatcaattactatgaaaacgatatcattcg |
205 |
Q |
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|||||||||| | ||||||||||||||||||| |||||||||||||||||| ||| |||||||| |||||||||| |||||||||||||||||||| | | |
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| T |
29050300 |
caatcaacaacttcatcacctacatccatgttgcctaataaaaacaagcaagatagaataaaaacatctccatcagttactatgaaaacgatatcaatag |
29050399 |
T |
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| Q |
206 |
aagaact |
212 |
Q |
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||||||| |
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| T |
29050400 |
aagaact |
29050406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 213 - 431
Target Start/End: Original strand, 29050439 - 29050660
Alignment:
| Q |
213 |
agataagtgaatgggaatttgatgcacttgataaagatcaacaccccatgaattgactcttgttgacccactgggaaaaagaccaacattactcatgttg |
312 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||||| |||| ||||||||| |
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| T |
29050439 |
agataagtgaatgggaatgtgatgcacttgataaagatcaacacaccatgagttgactcttgttgacccacttggaaaaagaccagcattgctcatgttg |
29050538 |
T |
|
| Q |
313 |
taaaaagagtgnnnnnnntgttatgtgtattaggaaggagtgtgacactgt----acgtgtaactcatataccagacaacttatccttaactaggttgtc |
408 |
Q |
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| T |
29050539 |
taaaaagagtgaaaaaag-gttctgtgtatttggaaggattgtgacaatgtgttaatgtgcaactcagataccagacaacatatccttaactatgttgtc |
29050637 |
T |
|
| Q |
409 |
tctcaagttcagttaacgaatgt |
431 |
Q |
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||||||||||| ||||||||||| |
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| T |
29050638 |
tctcaagttcacttaacgaatgt |
29050660 |
T |
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