View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17191_low_10 (Length: 232)

Name: NF17191_low_10
Description: NF17191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17191_low_10
NF17191_low_10
[»] chr7 (25 HSPs)
chr7 (17-206)||(21261139-21261328)
chr7 (25-206)||(23082037-23082218)
chr7 (25-206)||(10037991-10038172)
chr7 (17-206)||(24902815-24903003)
chr7 (30-196)||(14927366-14927533)
chr7 (30-196)||(15350832-15350999)
chr7 (75-201)||(7585816-7585942)
chr7 (73-194)||(26132228-26132349)
chr7 (23-143)||(23960740-23960860)
chr7 (68-206)||(20924368-20924506)
chr7 (48-204)||(10661602-10661757)
chr7 (134-206)||(10661927-10661999)
chr7 (49-206)||(20992284-20992443)
chr7 (49-120)||(16207228-16207299)
chr7 (47-206)||(29545401-29545561)
chr7 (49-206)||(12326553-12326711)
chr7 (60-206)||(10280596-10280742)
chr7 (158-206)||(6046125-6046173)
chr7 (48-204)||(42636946-42637102)
chr7 (17-119)||(6046028-6046130)
chr7 (47-120)||(4459478-4459551)
chr7 (169-205)||(15711776-15711812)
chr7 (30-206)||(15506951-15507129)
chr7 (174-206)||(3801872-3801904)
chr7 (174-206)||(11520671-11520703)
[»] chr1 (20 HSPs)
chr1 (26-206)||(10339420-10339600)
chr1 (17-206)||(41330643-41330832)
chr1 (36-206)||(1626301-1626471)
chr1 (73-203)||(25349493-25349623)
chr1 (76-206)||(24986751-24986882)
chr1 (152-206)||(17838240-17838294)
chr1 (141-202)||(15803479-15803540)
chr1 (134-206)||(12759293-12759365)
chr1 (135-206)||(23477197-23477268)
chr1 (137-206)||(4246870-4246939)
chr1 (134-203)||(47940126-47940195)
chr1 (24-119)||(8282635-8282731)
chr1 (20-119)||(51471439-51471539)
chr1 (73-206)||(20200349-20200483)
chr1 (73-119)||(12753825-12753871)
chr1 (47-120)||(9452145-9452218)
chr1 (50-206)||(11667163-11667320)
chr1 (174-206)||(13166261-13166293)
chr1 (169-205)||(18389423-18389459)
chr1 (174-206)||(20840524-20840556)
[»] chr6 (33 HSPs)
chr6 (17-206)||(26964815-26965003)
chr6 (25-206)||(24564431-24564612)
chr6 (41-206)||(15930109-15930274)
chr6 (17-202)||(19598390-19598565)
chr6 (17-206)||(19658624-19658816)
chr6 (73-206)||(12385119-12385252)
chr6 (54-206)||(13196070-13196223)
chr6 (30-175)||(23881990-23882136)
chr6 (137-211)||(24542666-24542740)
chr6 (137-206)||(3566111-3566180)
chr6 (25-117)||(17868275-17868367)
chr6 (25-117)||(17878058-17878150)
chr6 (23-119)||(11961184-11961280)
chr6 (24-119)||(18152107-18152203)
chr6 (139-206)||(17868230-17868297)
chr6 (139-206)||(17878013-17878080)
chr6 (164-206)||(23880951-23880993)
chr6 (74-203)||(29252942-29253074)
chr6 (73-206)||(33666556-33666688)
chr6 (47-203)||(17863737-17863894)
chr6 (24-119)||(20764351-20764447)
chr6 (68-119)||(21316941-21316992)
chr6 (172-206)||(21316900-21316934)
chr6 (53-119)||(24542399-24542465)
chr6 (68-118)||(34639555-34639605)
chr6 (47-120)||(8465014-8465087)
chr6 (47-206)||(20653808-20653969)
chr6 (47-120)||(20989137-20989210)
chr6 (174-211)||(21705785-21705822)
chr6 (174-206)||(8464927-8464959)
chr6 (174-206)||(11992281-11992313)
chr6 (174-206)||(21722668-21722700)
chr6 (76-120)||(25806176-25806220)
[»] chr8 (10 HSPs)
chr8 (17-202)||(20254142-20254327)
chr8 (30-206)||(18622382-18622556)
chr8 (48-204)||(9997237-9997392)
chr8 (134-206)||(9997550-9997622)
chr8 (30-211)||(27924707-27924891)
chr8 (38-211)||(25241088-25241262)
chr8 (47-206)||(23540667-23540827)
chr8 (73-211)||(33962498-33962634)
chr8 (47-211)||(33977798-33977960)
chr8 (47-206)||(26537026-26537186)
[»] chr3 (17 HSPs)
chr3 (30-206)||(979642-979818)
chr3 (42-206)||(3551741-3551904)
chr3 (48-206)||(286161-286319)
chr3 (51-204)||(6578812-6578965)
chr3 (134-206)||(6578582-6578654)
chr3 (97-206)||(21547572-21547682)
chr3 (139-211)||(21253298-21253369)
chr3 (39-117)||(21253347-21253425)
chr3 (75-206)||(13514878-13515010)
chr3 (174-206)||(18482633-18482665)
chr3 (95-206)||(28051925-28052037)
chr3 (71-120)||(18063554-18063603)
chr3 (174-206)||(7028331-7028363)
chr3 (174-206)||(15572266-15572298)
chr3 (174-206)||(17135405-17135437)
chr3 (174-206)||(23953818-23953850)
chr3 (174-206)||(28052201-28052233)
[»] chr2 (11 HSPs)
chr2 (22-206)||(21249458-21249643)
chr2 (30-206)||(21531099-21531276)
chr2 (49-206)||(15329061-15329218)
chr2 (24-119)||(27108158-27108254)
chr2 (24-119)||(19197681-19197777)
chr2 (24-119)||(27111747-27111843)
chr2 (172-206)||(23759489-23759523)
chr2 (139-204)||(24311162-24311225)
chr2 (30-119)||(31588201-31588291)
chr2 (174-206)||(12911359-12911391)
chr2 (136-203)||(20645604-20645669)
[»] chr5 (19 HSPs)
chr5 (48-206)||(13941276-13941434)
chr5 (30-206)||(20714004-20714180)
chr5 (73-206)||(26037542-26037676)
chr5 (74-206)||(38406127-38406259)
chr5 (74-206)||(23624607-23624739)
chr5 (44-119)||(25674441-25674517)
chr5 (75-206)||(22081952-22082083)
chr5 (95-203)||(26328480-26328588)
chr5 (137-206)||(23419817-23419886)
chr5 (47-115)||(9421868-9421936)
chr5 (136-203)||(17660774-17660839)
chr5 (139-194)||(20740302-20740355)
chr5 (73-120)||(30605038-30605085)
chr5 (73-206)||(22251301-22251435)
chr5 (75-120)||(24190630-24190675)
chr5 (158-206)||(18221960-18222008)
chr5 (174-206)||(22240238-22240270)
chr5 (174-206)||(22404021-22404053)
chr5 (174-206)||(24190730-24190762)
[»] chr4 (23 HSPs)
chr4 (17-189)||(32862353-32862526)
chr4 (48-204)||(9069684-9069840)
chr4 (134-206)||(10683252-10683324)
chr4 (134-206)||(10896892-10896964)
chr4 (75-206)||(19182943-19183074)
chr4 (17-120)||(41786142-41786245)
chr4 (134-206)||(10723303-10723375)
chr4 (134-206)||(10937072-10937144)
chr4 (17-206)||(15623145-15623334)
chr4 (134-206)||(10718479-10718551)
chr4 (134-206)||(10932248-10932320)
chr4 (134-206)||(33744492-33744564)
chr4 (52-206)||(10724942-10725096)
chr4 (52-206)||(10938711-10938865)
chr4 (24-119)||(10197596-10197692)
chr4 (74-206)||(15699597-15699729)
chr4 (101-206)||(15161763-15161869)
chr4 (161-206)||(41786276-41786321)
chr4 (169-205)||(16654603-16654639)
chr4 (68-118)||(10718235-10718285)
chr4 (68-118)||(10932004-10932054)
chr4 (174-206)||(16384757-16384789)
chr4 (136-203)||(18006065-18006130)
[»] scaffold0035 (1 HSPs)
scaffold0035 (28-206)||(38025-38203)
[»] scaffold0213 (1 HSPs)
scaffold0213 (30-206)||(7839-8017)
[»] scaffold0008 (1 HSPs)
scaffold0008 (138-206)||(36571-36639)
[»] scaffold0226 (3 HSPs)
scaffold0226 (42-206)||(6799-6965)
scaffold0226 (73-206)||(17385-17519)
scaffold0226 (73-206)||(26779-26913)
[»] scaffold0520 (2 HSPs)
scaffold0520 (68-119)||(5727-5778)
scaffold0520 (68-119)||(11982-12033)
[»] scaffold0185 (2 HSPs)
scaffold0185 (73-120)||(1715-1762)
scaffold0185 (174-206)||(1628-1660)
[»] scaffold0453 (1 HSPs)
scaffold0453 (73-120)||(1348-1395)
[»] scaffold0190 (1 HSPs)
scaffold0190 (30-120)||(15968-16059)
[»] scaffold0129 (1 HSPs)
scaffold0129 (73-120)||(16270-16317)
[»] scaffold0359 (1 HSPs)
scaffold0359 (174-206)||(2756-2788)
[»] scaffold0103 (1 HSPs)
scaffold0103 (174-206)||(24938-24970)
[»] scaffold0059 (1 HSPs)
scaffold0059 (174-206)||(47651-47683)
[»] scaffold0024 (1 HSPs)
scaffold0024 (174-206)||(159938-159970)


Alignment Details
Target: chr7 (Bit Score: 114; Significance: 6e-58; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 17 - 206
Target Start/End: Original strand, 21261139 - 21261328
Alignment:
Q  17 atgaagacgtggattccttaaaaatataaagcgcgcgtacaactaggcataaaacaaggcacactgaaccttgcgagaatgttggaacatcatatccaac 116  Q
    |||| |||||||||||||||| || |||||||||||||||||  | |||||||||||||||||||||||| ||| || ||||||||||||||||||||||    
T  21261139 atgaggacgtggattccttaataagataaagcgcgcgtacaatcaagcataaaacaaggcacactgaaccgtgccaggatgttggaacatcatatccaac 21261238  T
Q  117 atctcttagaaatgtcaaaaacatgttgaaacattgtatctaacatcacaatcatgaatatttgttttagcaataatgcagccaatacaa 206  Q
    ||||   ||||||| | ||||||||||| ||||| ||||| |||||||||||||||||||||| |||||||||| |||||||||||||||    
T  21261239 atcttacagaaatgcctaaaacatgttggaacatagtatccaacatcacaatcatgaatatttattttagcaatgatgcagccaatacaa 21261328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 25 - 206
Target Start/End: Complemental strand, 23082218 - 23082037
Alignment:
Q  25 gtggattccttaaaaatataaagcgcgcgtacaactaggcataaaacaaggcacactgaaccttgcgagaatgttggaacatcatatccaacatctctta 124  Q
    ||||||||||||| || |||||||||||||| ||  |||||||||| ||||||||||||||| ||| || ||||||||||||||||||||||||||   |    
T  23082218 gtggattccttaataagataaagcgcgcgtataatcaggcataaaataaggcacactgaaccgtgccaggatgttggaacatcatatccaacatcttaca 23082119  T
Q  125 gaaatgtcaaaaacatgttgaaacattgtatctaacatcacaatcatgaatatttgttttagcaataatgcagccaatacaa 206  Q
    |||||| | ||||||||||| ||||| || || ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  23082118 gaaatgcctaaaacatgttggaacatagtttccaacatcacaatcatggatatttgttttagcaataatgcagccaatacaa 23082037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 25 - 206
Target Start/End: Complemental strand, 10038172 - 10037991
Alignment:
Q  25 gtggattccttaaaaatataaagcgcgcgtacaactaggcataaaacaaggcacactgaaccttgcgagaatgttggaacatcatatccaacatctctta 124  Q
    ||||||||||||| || |||||||| ||||||||  |||||||||||||||||||||||||| ||| || |||||||||||| |||||||||||||   |    
T  10038172 gtggattccttaataagataaagcgtgcgtacaatcaggcataaaacaaggcacactgaaccatgccagtatgttggaacattatatccaacatcttaca 10038073  T
Q  125 gaaatgtcaaaaacatgttgaaacattgtatctaacatcacaatcatgaatatttgttttagcaataatgcagccaatacaa 206  Q
    |||||| | ||||||||||| ||||| ||||| ||||  |||| |||| ||||||||||| |||||||||||||||||||||    
T  10038072 gaaatgcctaaaacatgttggaacatagtatccaacaatacaaacatggatatttgttttcgcaataatgcagccaatacaa 10037991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 17 - 206
Target Start/End: Original strand, 24902815 - 24903003
Alignment:
Q  17 atgaagacgtggattccttaaaaatataaagcgcgcgtacaactaggcataaaacaaggcacactgaaccttgcgagaatgttggaacatcatatccaac 116  Q
    |||| ||||||||||| |||| || |||||| || | ||||   |||||||||| ||||||||||||||| ||| || ||||||||||||||||||||||    
T  24902815 atgaggacgtggattctttaataagataaagtgcacatacattcaggcataaaaaaaggcacactgaaccgtgc-aggatgttggaacatcatatccaac 24902913  T
Q  117 atctcttagaaatgtcaaaaacatgttgaaacattgtatctaacatcacaatcatgaatatttgttttagcaataatgcagccaatacaa 206  Q
    ||||| |||||||| | ||||||||||| ||||| ||||| |||||||||| |||| |||||||||||| ||||||||||||||||||||    
T  24902914 atctcgtagaaatgcctaaaacatgttggaacatagtatccaacatcacaaacatggatatttgttttaccaataatgcagccaatacaa 24903003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 30 - 196
Target Start/End: Original strand, 14927366 - 14927533
Alignment:
Q  30 ttccttaaa-aatataaagcgcgcgtacaactaggcataaaacaaggcacactgaaccttgcgagaatgttggaacatcatatccaacatctcttagaaa 128  Q
    ||||||||| |||| || ||||||||||||   | ||| | |||||||||||| |||| ||| || ||||||||||||| ||||||||||||   ||| |    
T  14927366 ttccttaaataataaaaggcgcgcgtacaaaccgacatgatacaaggcacactaaaccgtgccaggatgttggaacatcgtatccaacatcttaaagaga 14927465  T
Q  129 tgtcaaaaacatgttgaaacattgtatctaacatcacaatcatgaatatttgttttagcaataatgca 196  Q
    ||||  |||||||||| ||||||||||| |||| ||||| |||| |||||||||||||||||||||||    
T  14927466 tgtctgaaacatgttggaacattgtatccaacaacacaaacatggatatttgttttagcaataatgca 14927533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 30 - 196
Target Start/End: Original strand, 15350832 - 15350999
Alignment:
Q  30 ttccttaaa-aatataaagcgcgcgtacaactaggcataaaacaaggcacactgaaccttgcgagaatgttggaacatcatatccaacatctcttagaaa 128  Q
    ||||||||| |||| || ||||||||||||   | ||| | |||||||||||| |||| ||| || ||||||||||||| ||||||||||||   ||| |    
T  15350832 ttccttaaataataaaaggcgcgcgtacaaaccgacatgatacaaggcacactaaaccgtgccaggatgttggaacatcgtatccaacatcttaaagaga 15350931  T
Q  129 tgtcaaaaacatgttgaaacattgtatctaacatcacaatcatgaatatttgttttagcaataatgca 196  Q
    ||||  |||||||||| ||||||||||| |||| ||||| |||| |||||||||||||||||||||||    
T  15350932 tgtctgaaacatgttggaacattgtatccaacaacacaaacatggatatttgttttagcaataatgca 15350999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 75 - 201
Target Start/End: Complemental strand, 7585942 - 7585816
Alignment:
Q  75 gcacactgaaccttgcgagaatgttggaacatcatatccaacatctcttagaaatgtcaaaaacatgttgaaacattgtatctaacatcacaatcatgaa 174  Q
    |||||||||||| | | || | |||||||||||||||||  |||||  || ||||| | ||||||||||| || || ||||| ||||||||||||||| |    
T  7585942 gcacactgaaccgtaccaggaagttggaacatcatatcccgcatcttataaaaatgcctaaaacatgttggaaaatagtatccaacatcacaatcatgga 7585843  T
Q  175 tatttgttttagcaataatgcagccaa 201  Q
    |||||||||||||||||||||||||||    
T  7585842 tatttgttttagcaataatgcagccaa 7585816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 73 - 194
Target Start/End: Complemental strand, 26132349 - 26132228
Alignment:
Q  73 aggcacactgaaccttgcgagaatgttggaacatcatatccaacatctcttagaaatgtcaaaaacatgttgaaacattgtatctaacatcacaatcatg 172  Q
    |||||||||||||| ||| || ||||||||||||||||||||||||||   ||| ||| |  |||||||||| ||||| ||||| || ||||||| ||||    
T  26132349 aggcacactgaaccgtgccaggatgttggaacatcatatccaacatcttacagagatgcctgaaacatgttggaacatagtatccaatatcacaaacatg 26132250  T
Q  173 aatatttgttttagcaataatg 194  Q
     |||||||||||||||||||||    
T  26132249 gatatttgttttagcaataatg 26132228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 23 - 143
Target Start/End: Original strand, 23960740 - 23960860
Alignment:
Q  23 acgtggattccttaaaaatataaagcgcgcgtacaactaggcataaaacaaggcacactgaaccttgcgagaatgttggaacatcatatccaacatctct 122  Q
    ||||||||||||||| || ||||| |||||||||||  |||||||||| ||||||||||||| | ||| || ||||||||||||| ||||||||||||      
T  23960740 acgtggattccttaataaaataaaacgcgcgtacaatcaggcataaaataaggcacactgaatcgtgccaggatgttggaacatcgtatccaacatctta 23960839  T
Q  123 tagaaatgtcaaaaacatgtt 143  Q
     ||||||| | ||||||||||    
T  23960840 cagaaatgcctaaaacatgtt 23960860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 68 - 206
Target Start/End: Complemental strand, 20924506 - 20924368
Alignment:
Q  68 aaacaaggcacactgaaccttgcgagaatgttggaacatcatatccaacatctcttagaaatgtcaaaaacatgttgaaacattgtatctaacatcacaa 167  Q
    ||||||||||||||||| ||||| || ||||||||||||| ||||||||||||    || ||| |  || ||||||||||||||  |||| ||| |||||    
T  20924506 aaacaaggcacactgaatcttgccaggatgttggaacatcgtatccaacatcttacggagatgcctgaaccatgttgaaacattacatcttacaacacaa 20924407  T
Q  168 tcatgaatatttgttttagcaataatgcagccaatacaa 206  Q
     ||||||||||||||||| ||| ||||||| ||||||||    
T  20924406 acatgaatatttgttttaacaacaatgcagacaatacaa 20924368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 48 - 204
Target Start/End: Original strand, 10661602 - 10661757
Alignment:
Q  48 cgcgcgtacaactaggcataaaacaaggcacactgaaccttgcgagaatgttggaacatcatatccaacatctcttagaaatgtcaaaaacatgttgaaa 147  Q
    ||||||||||| ||||||| |||  |||||||||||||| ||| || ||||||||||||| ||||||||||||   | ||||| | ||||||||||| ||    
T  10661602 cgcgcgtacaaataggcatgaaatcaggcacactgaaccgtgctaggatgttggaacatcgtatccaacatcttacataaatgcctaaaacatgttggaa 10661701  T
Q  148 cattgtatctaacatcacaatcatgaatatttgttttagcaataatgcagccaatac 204  Q
      ||||||| ||||||||||  |||  ||||||||||||||| || | |||||||||    
T  10661702 acttgtatccaacatcacaa-aatgggtatttgttttagcaacaacgaagccaatac 10661757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 134 - 206
Target Start/End: Original strand, 10661927 - 10661999
Alignment:
Q  134 aaaacatgttgaaacattgtatctaacatcacaatcatgaatatttgttttagcaataatgcagccaatacaa 206  Q
    ||||||||||| ||||| ||||| |||||||||| |||| |||||||||||||||||||||||||||||||||    
T  10661927 aaaacatgttggaacatagtatccaacatcacaaacatggatatttgttttagcaataatgcagccaatacaa 10661999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 49 - 206
Target Start/End: Original strand, 20992284 - 20992443
Alignment:
Q  49 gcgcgtacaactaggcataaaacaaggcacactgaaccttgcgagaatgttggaacatcatatccaacatctcttagaaatgtc-aaaaacatgttgaaa 147  Q
    |||||||||| ||||||| || | |||||||||||||| ||| || ||||||||||||||||||||||||||   ||| ||| | ||| | ||||| |||    
T  20992284 gcgcgtacaaataggcatgaacctaggcacactgaaccgtgccaggatgttggaacatcatatccaacatcttacagagatgcctaaacaaatgttaaaa 20992383  T
Q  148 cattgtatctaacat-cacaatcatgaatatttgttttagcaataatgcagccaatacaa 206  Q
    || ||  || ||| | || || || | |||||||||||||||||||||||||||||||||    
T  20992384 cactggttccaacttacataaacaaggatatttgttttagcaataatgcagccaatacaa 20992443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 49 - 120
Target Start/End: Complemental strand, 16207299 - 16207228
Alignment:
Q  49 gcgcgtacaactaggcataaaacaaggcacactgaaccttgcgagaatgttggaacatcatatccaacatct 120  Q
    |||||||||| ||||||| || | |||||||||||||| ||| || ||||||||||||||||||||||||||    
T  16207299 gcgcgtacaagtaggcatgaacccaggcacactgaaccatgccaggatgttggaacatcatatccaacatct 16207228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 47 - 206
Target Start/End: Complemental strand, 29545561 - 29545401
Alignment:
Q  47 gcgcgcgtacaactaggcataaaacaaggcacactgaaccttgcgagaatgttggaacatcatatccaacatctcttagaaatgtc-aaaaacatgttga 145  Q
    |||||||||||| ||||||| || | || ||||||||||| ||| || ||||||||||||  ||||||||||||   ||| ||| | ||| ||||||||     
T  29545561 gcgcgcgtacaaataggcatgaacccagacacactgaaccatgctaggatgttggaacattgtatccaacatcttacagagatgcctaaacacatgttgg 29545462  T
Q  146 aacattgtatctaacatcacaatcatgaatatttgttttagcaataatgcagccaatacaa 206  Q
    ||||||   || |||| ||||| || |||||||| ||||||||| ||| || |||||||||    
T  29545461 aacattagttccaacaacacaaacaagaatatttattttagcaacaatacaaccaatacaa 29545401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 49 - 206
Target Start/End: Original strand, 12326553 - 12326711
Alignment:
Q  49 gcgcgtacaactaggcataaaacaaggcacactgaaccttgcgagaatgttggaacatcatatccaacatctcttagaaatgtc-aaaaacatgttgaaa 147  Q
    |||||||||| ||||||| || | | |||||||||||| ||| || ||||||||||||| ||||||||||||  |||| ||| | ||| |||||||| ||    
T  12326553 gcgcgtacaagtaggcatgaacccatgcacactgaaccgtgccaggatgttggaacatcgtatccaacatcttatagagatgcctaaacacatgttggaa 12326652  T
Q  148 cattgtatctaacat-cacaatcatgaatatttgttttagcaataatgcagccaatacaa 206  Q
    | ||   || ||| | ||| | || | |||||||||||||||||||||||||||||||||    
T  12326653 cctttgttccaacttacac-accaaggatatttgttttagcaataatgcagccaatacaa 12326711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 60 - 206
Target Start/End: Original strand, 10280596 - 10280742
Alignment:
Q  60 taggcataaaacaaggcacactgaaccttgcgagaatgttggaacatcatatccaacatctcttagaaatgtcaaaaacatgttgaaacattgtatctaa 159  Q
    ||||||| | ||||||||||||||||| ||  || ||||||||| ||| |||||||||| | |   | ||| |  |||||||||  ||||| ||||| ||    
T  10280596 taggcatgatacaaggcacactgaaccgtggcaggatgttggaatatcgtatccaacatttttcttatatgcctgaaacatgttagaacatagtatccaa 10280695  T
Q  160 catcacaatcatgaatatttgttttagcaataatgcagccaatacaa 206  Q
    || ||||  |||| |||||| ||||||||| ||||||||||||||||    
T  10280696 caacacagacatggatatttattttagcaacaatgcagccaatacaa 10280742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 158 - 206
Target Start/End: Original strand, 6046125 - 6046173
Alignment:
Q  158 aacatcacaatcatgaatatttgttttagcaataatgcagccaatacaa 206  Q
    ||||||| ||||||||||||||||||| |||||| ||||||||||||||    
T  6046125 aacatcataatcatgaatatttgttttcgcaatagtgcagccaatacaa 6046173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 48 - 204
Target Start/End: Original strand, 42636946 - 42637102
Alignment:
Q  48 cgcgcgtacaactaggcataaaacaaggcacactgaaccttgcgagaatgttggaacatcatatccaacatctcttagaaatgtcaaaaacatgttgaaa 147  Q
    ||||||||||| ||||||| |||  || ||||||||||| ||| || | ||||||||||| ||| ||||||||   |||||||   |||||||||||  |    
T  42636946 cgcgcgtacaaataggcatgaaagcagacacactgaaccgtgccaggacgttggaacatcgtattcaacatcttacagaaatgcttaaaacatgttggca 42637045  T
Q  148 cattgtatctaacatcacaatcatgaatatttgttttagcaataatgcagccaatac 204  Q
      || |||| ||||| |||| ||||  ||||||||||||||| |||  |||||||||    
T  42637046 acttatatccaacattacaaacatgggtatttgttttagcaacaataaagccaatac 42637102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 119
Target Start/End: Original strand, 6046028 - 6046130
Alignment:
Q  17 atgaagacgtggattccttaaaaatataaagcgcgcgtacaactaggcataaaacaaggcacactgaaccttgcgagaatgttggaacatcatatccaac 116  Q
    |||| |||||||||||||||| || ||||||||| |||| ||  ||||||||||||||||||  |||| | ||  || ||||||||||||   |||||||    
T  6046028 atgacgacgtggattccttaataagataaagcgcacgtataataaggcataaaacaaggcacgttgaatcgtgtcaggatgttggaacatatgatccaac 6046127  T
Q  117 atc 119  Q
    |||    
T  6046128 atc 6046130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 120
Target Start/End: Original strand, 4459478 - 4459551
Alignment:
Q  47 gcgcgcgtacaactaggcataaaacaaggcacactgaaccttgcgagaatgttggaacatcatatccaacatct 120  Q
    |||||||||||| ||||||| || | |||||||||||| | ||| || ||||||||||||  ||||||||||||    
T  4459478 gcgcgcgtacaaataggcatgaacctaggcacactgaatcgtgctaggatgttggaacattgtatccaacatct 4459551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 205
Target Start/End: Original strand, 15711776 - 15711812
Alignment:
Q  169 catgaatatttgttttagcaataatgcagccaataca 205  Q
    |||||||||||||||||||||||||| ||||||||||    
T  15711776 catgaatatttgttttagcaataatgaagccaataca 15711812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 206
Target Start/End: Original strand, 15506951 - 15507129
Alignment:
Q  30 ttccttaaa-aatataaagcgcgcgtacaactaggcataaaacaaggcacactgaaccttgcgagaatgttggaacatcatatccaacatctcttagaaa 128  Q
    ||||||||| |||| | ||||||||||||  ||||||  || | ||||| ||| |||| ||  || ||||| ||||||| ||||||||||||  |||| |    
T  15506951 ttccttaaacaataaagagcgcgcgtacaggtaggcaagaacccaggcatacttaaccgtgtcaggatgtttgaacatcgtatccaacatcttatagaga 15507050  T
Q  129 tgtcaaaa-acatgttgaaacattgtatctaacatcaca-atcatgaatatttgttttagcaataatgcagccaatacaa 206  Q
    || | ||| |||||||| |||||||  || ||| | ||| |||| | |||||||||||||||| ||||||||||||||||    
T  15507051 tgcctaaacacatgttggaacattggttccaactt-acacatcaaggatatttgttttagcaacaatgcagccaatacaa 15507129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 206
Target Start/End: Original strand, 3801872 - 3801904
Alignment:
Q  174 atatttgttttagcaataatgcagccaatacaa 206  Q
    |||||||||||||||| ||||||||||||||||    
T  3801872 atatttgttttagcaacaatgcagccaatacaa 3801904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 206
Target Start/End: Complemental strand, 11520703 - 11520671
Alignment:
Q  174 atatttgttttagcaataatgcagccaatacaa 206  Q
    |||||||||||||||| ||||||||||||||||    
T  11520703 atatttgttttagcaacaatgcagccaatacaa 11520671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 26 - 206
Target Start/End: Complemental strand, 10339600 - 10339420
Alignment:
Q  26 tggattccttaaaaatataaagcgcgcgtacaactaggcataaaacaaggcacactgaaccttgcgagaatgttggaacatcatatccaacatctcttag 125  Q
    ||||||||||||||| |||||| ||||||||||  || ||||||||||||||||||||||| ||  |  ||||||||||||| ||||||||||||   ||    
T  10339600 tggattccttaaaaagataaagtgcgcgtacaatcagacataaaacaaggcacactgaaccgtgtcaagatgttggaacatcgtatccaacatcttacag 10339501  T
Q  126 aaatgtcaaaaacatgttgaaacattgtatctaacatcacaatcatgaatatttgttttagcaataatgcagccaatacaa 206  Q
    ||||| | ||||||||||| ||||| ||||| |||||| |||||||| |||||| ||||||||||||||||||||||||||    
T  10339500 aaatgcctaaaacatgttggaacatagtatccaacatcgcaatcatggatatttattttagcaataatgcagccaatacaa 10339420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 17 - 206
Target Start/End: Complemental strand, 41330832 - 41330643
Alignment:
Q  17 atgaagacgtggattccttaaaaatataaagcgcgcgtacaactaggcataaaacaaggcacactgaaccttgcgagaatgttggaacatcatatccaac 116  Q
    |||| |||||||||||||||| || |||||||||||||||||  |||||||||||||||||||||||||| ||  || |||||||||||||| ||||||     
T  41330832 atgaggacgtggattccttaataagataaagcgcgcgtacaatcaggcataaaacaaggcacactgaaccgtgataggatgttggaacatcacatccaaa 41330733  T
Q  117 atctcttagaaatgtcaaaaacatgttgaaacattgtatctaacatcacaatcatgaatatttgttttagcaataatgcagccaatacaa 206  Q
    ||||  |  ||||| | |||||| |||| ||||| ||||| ||||||| ||||||| |||||||||||||||| ||||||| ||||||||    
T  41330732 atcttgtgaaaatgcctaaaacacgttggaacatggtatcgaacatcaaaatcatggatatttgttttagcaacaatgcagtcaatacaa 41330643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 36 - 206
Target Start/End: Original strand, 1626301 - 1626471
Alignment:
Q  36 aaaaatataaagcgcgcgtacaactaggcataaaacaaggcacactgaaccttgcgagaatgttggaacatcatatccaacatctcttagaaatgtcaaa 135  Q
    ||||| ||||||||||||||||| ||||||| |||| |||||||||||||  | | || ||||||||||||||||||||||||||   |||||||   ||    
T  1626301 aaaaagataaagcgcgcgtacaagtaggcatgaaaccaggcacactgaactgttccaggatgttggaacatcatatccaacatcttacagaaatgcataa 1626400  T
Q  136 aacatgttgaaacattgtatctaacatcacaatcatgaatatttgttttagcaataatgcagccaatacaa 206  Q
    ||||||||| || |||||||| |||| || || || | |||||||||||||||||||||||||||||||||    
T  1626401 aacatgttggaatattgtatccaacaacataaacaaggatatttgttttagcaataatgcagccaatacaa 1626471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 73 - 203
Target Start/End: Complemental strand, 25349623 - 25349493
Alignment:
Q  73 aggcacactgaaccttgcgagaatgttggaacatcatatccaacatctcttagaaatgtcaaaaacatgttgaaacattgtatctaacatcacaatcatg 172  Q
    |||||||||||||| ||| || ||||||||| ||||||||||||||||   | ||||| | ||||||||||| ||||||||||| |||| ||||| ||||    
T  25349623 aggcacactgaaccatgccaggatgttggaatatcatatccaacatcttacataaatgcctaaaacatgttggaacattgtatccaacaacacaaacatg 25349524  T
Q  173 aatatttgttttagcaataatgcagccaata 203  Q
     |||||||||||| ||||||||||| |||||    
T  25349523 gatatttgttttaacaataatgcagtcaata 25349493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 76 - 206
Target Start/End: Original strand, 24986751 - 24986882
Alignment:
Q  76 cacactgaaccttgcgagaatgttggaacatcatatccaacatctcttagaaatgtcaaaa-acatgttgaaacattgtatctaacatcacaatcatgaa 174  Q
    ||||||||||| ||| |||||||||||||||  ||||||||||||   ||| ||| | ||| |||||||| |||||||  || |||| |||| ||| | |    
T  24986751 cacactgaaccgtgccagaatgttggaacattgtatccaacatcttacagagatgcctaaacacatgttggaacattggttccaacaacacagtcaagga 24986850  T
Q  175 tatttgttttagcaataatgcagccaatacaa 206  Q
    ||||| ||||||||||||||||| ||||||||    
T  24986851 tatttattttagcaataatgcagtcaatacaa 24986882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 152 - 206
Target Start/End: Complemental strand, 17838294 - 17838240
Alignment:
Q  152 gtatctaacatcacaatcatgaatatttgttttagcaataatgcagccaatacaa 206  Q
    ||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  17838294 gtatccaacaacacaaacatgaatatttgttttagcaataatgcagccaatacaa 17838240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 141 - 202
Target Start/End: Complemental strand, 15803540 - 15803479
Alignment:
Q  141 gttgaaacattgtatctaacatcacaatcatgaatatttgttttagcaataatgcagccaat 202  Q
    |||| ||||| ||||| |||| ||||| ||||||||||||||||||||||||||||||||||    
T  15803540 gttggaacatcgtatccaacaacacaaacatgaatatttgttttagcaataatgcagccaat 15803479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 134 - 206
Target Start/End: Original strand, 12759293 - 12759365
Alignment:
Q  134 aaaacatgttgaaacattgtatctaacatcacaatcatgaatatttgttttagcaataatgcagccaatacaa 206  Q
    ||||||||||| |||||  |||| |||||||||| |||| ||||||||||||||||||||||| | |||||||    
T  12759293 aaaacatgttggaacataatatccaacatcacaaacatggatatttgttttagcaataatgcaactaatacaa 12759365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 135 - 206
Target Start/End: Complemental strand, 23477268 - 23477197
Alignment:
Q  135 aaacatgttgaaacattgtatctaacatcacaatcatgaatatttgttttagcaataatgcagccaatacaa 206  Q
    |||||||||| ||||| ||||| |||| ||||   |||||||||||||||||||| ||||||||||||||||    
T  23477268 aaacatgttggaacatagtatccaacaacacatatatgaatatttgttttagcaacaatgcagccaatacaa 23477197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 206
Target Start/End: Original strand, 4246870 - 4246939
Alignment:
Q  137 acatgttgaaacattgtatctaacatcacaatcatgaatatttgttttagcaataatgcagccaatacaa 206  Q
    ||||||||||||||||  || |||| ||||  || | |||||||||||||||| ||||||||||||||||    
T  4246870 acatgttgaaacattggttccaacaacacatacaaggatatttgttttagcaacaatgcagccaatacaa 4246939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 203
Target Start/End: Complemental strand, 47940195 - 47940126
Alignment:
Q  134 aaaacatgttgaaacattgtatctaacatcacaatcatgaatatttgttttagcaataatgcagccaata 203  Q
    ||||||||||| ||||| ||||| ||||||||||  ||| |||||||||||| ||||||  |||||||||    
T  47940195 aaaacatgttggaacatagtatccaacatcacaaatatggatatttgttttaacaataacacagccaata 47940126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 119
Target Start/End: Original strand, 8282635 - 8282731
Alignment:
Q  24 cgtggattccttaaaaatataaagcgcgcgtacaactaggcata-aaacaaggcacactgaaccttgcgagaatgttggaacatcatatccaacatc 119  Q
    |||||||||||| | || |||||||||| ||| ||| ||||| | ||||||||| ||||||||  ||  || ||||||||||||| |||||||||||    
T  8282635 cgtggattccttgataagataaagcgcgggtaaaacaaggcacataaacaaggctcactgaactgtgtcaggatgttggaacatcgtatccaacatc 8282731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 119
Target Start/End: Complemental strand, 51471539 - 51471439
Alignment:
Q  20 aagacgtggattccttaaaaatataaagcgcgcgtacaactaggcata-aaacaaggcacactgaaccttgcgagaatgttggaacatcatatccaacat 118  Q
    ||||||||| |||||||| || |||||||||| | | | | || || | ||||| ||||||||||||| ||| || |||||||||| |||||||||||||    
T  51471539 aagacgtggtttccttaataagataaagcgcgtgaaaatcaagccacacaaacagggcacactgaaccgtgccaggatgttggaacttcatatccaacat 51471440  T
Q  119 c 119  Q
    |    
T  51471439 c 51471439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 206
Target Start/End: Complemental strand, 20200483 - 20200349
Alignment:
Q  73 aggcacactgaaccttgcgagaatgttggaacatcatatccaacatctcttagaaatgtcaaaa-acatgttgaaacattgtatctaacatc-acaatca 170  Q
    ||||| |||||||| ||| || ||||||||||||| ||||||||||||   ||| ||| | ||| |||||||| |||||||  || ||| |  |||| ||    
T  20200483 aggcatactgaaccgtgccaggatgttggaacatcgtatccaacatcttacagagatgcctaaacacatgttggaacattggttccaacttatacaa-ca 20200385  T
Q  171 tgaatatttgttttagcaataatgcagccaatacaa 206  Q
     | |||||||||||||||| ||||||||||||||||    
T  20200384 aggatatttgttttagcaacaatgcagccaatacaa 20200349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 119
Target Start/End: Original strand, 12753825 - 12753871
Alignment:
Q  73 aggcacactgaaccttgcgagaatgttggaacatcatatccaacatc 119  Q
    |||||||||||||| ||| || ||||||||||||| |||||||||||    
T  12753825 aggcacactgaaccgtgccaggatgttggaacatcgtatccaacatc 12753871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 120
Target Start/End: Original strand, 9452145 - 9452218
Alignment:
Q  47 gcgcgcgtacaactaggcataaaacaaggcacactgaaccttgcgagaatgttggaacatcatatccaacatct 120  Q
    |||||||||||| |||||   || | |||||||||||||  ||| ||||||||||| |||| ||||||||||||    
T  9452145 gcgcgcgtacaagtaggcgagaacccaggcacactgaactgtgccagaatgttggagcatcgtatccaacatct 9452218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 206
Target Start/End: Complemental strand, 11667320 - 11667163
Alignment:
Q  50 cgcgtacaactaggcataaaacaaggcacactgaaccttgcgagaatgttggaacatcatatccaacatctcttagaaatgtc-aaaaacatgttgaaac 148  Q
    ||||||||| ||||||| || | || |||||| |||  ||| |  ||||||||||||| ||||||||||||   ||| ||||| ||| |||||||| |||    
T  11667320 cgcgtacaaataggcatgaacccagacacacttaactgtgccatgatgttggaacatcgtatccaacatcttacagagatgtctaaacacatgttggaac 11667221  T
Q  149 attgtatctaacatcacaatcatgaatatttgttttagcaataatgcagccaatacaa 206  Q
    ||||  || |||| ||||| || | |||||||||| | ||| |||| || ||||||||    
T  11667220 attggttccaacaacacaaacaaggatatttgtttaatcaacaatggagtcaatacaa 11667163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 206
Target Start/End: Original strand, 13166261 - 13166293
Alignment:
Q  174 atatttgttttagcaataatgcagccaatacaa 206  Q
    |||||||||||||||| ||||||||||||||||    
T  13166261 atatttgttttagcaacaatgcagccaatacaa 13166293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 205
Target Start/End: Complemental strand, 18389459 - 18389423
Alignment:
Q  169 catgaatatttgttttagcaataatgcagccaataca 205  Q
    ||||||||||||||||||||||||||  |||||||||    
T  18389459 catgaatatttgttttagcaataatgaggccaataca 18389423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 206
Target Start/End: Complemental strand, 20840556 - 20840524
Alignment:
Q  174 atatttgttttagcaataatgcagccaatacaa 206  Q
    |||||||||||||||| ||||||||||||||||    
T  20840556 atatttgttttagcaacaatgcagccaatacaa 20840524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 90; Significance: 1e-43; HSPs: 33)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 17 - 206
Target Start/End: Complemental strand, 26965003 - 26964815
Alignment:
Q  17 atgaagacgtggattccttaaaaatataaagcgcgcgtacaactaggcataaaacaaggcacactgaaccttgcgagaatgttggaacatcatatccaac 116  Q
    |||| |||||||||||||||| || ||||||||| | |||||  || ||||||||||||||||||||||| ||  |||||||||||||||||||||||||    
T  26965003 atgaggacgtggattccttaataagataaagcgcacatacaataagacataaaacaaggcacactgaaccgtgtcagaatgttggaacatcatatccaac 26964904  T
Q  117 atctcttagaaatgtcaaaaacatgttgaaacattgtatctaacatcacaatcatgaatatttgttttagcaataatgcagccaatacaa 206  Q
    ||||| |  |||| || ||||||||||| ||||| ||||| ||||||| |  |||| |||||||||||||||| ||||||||||||||||    
T  26964903 atctcgtgaaaatttccaaaacatgttggaacatagtatccaacatca-acacatggatatttgttttagcaacaatgcagccaatacaa 26964815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 25 - 206
Target Start/End: Original strand, 24564431 - 24564612
Alignment:
Q  25 gtggattccttaaaaatataaagcgcgcgtacaactaggcataaaacaaggcacactgaaccttgcgagaatgttggaacatcatatccaacatctctta 124  Q
    ||||||||||||| || |||||||||||||||||  |||||||||||||||||||||||| | ||| || || || |||||||| ||||||||||   |     
T  24564431 gtggattccttaataagataaagcgcgcgtacaatcaggcataaaacaaggcacactgaatcgtgctaggatatttgaacatcacatccaacatcctgtg 24564530  T
Q  125 gaaatgtcaaaaacatgttgaaacattgtatctaacatcacaatcatgaatatttgttttagcaataatgcagccaatacaa 206  Q
     ||||| | ||||||||||| ||||| ||||| ||||||| ||||||| |||||| ||||||||| ||||||||||||||||    
T  24564531 aaaatgcctaaaacatgttggaacatggtatccaacatcataatcatggatatttattttagcaaaaatgcagccaatacaa 24564612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 41 - 206
Target Start/End: Complemental strand, 15930274 - 15930109
Alignment:
Q  41 tataaagcgcgcgtacaactaggcataaaacaaggcacactgaaccttgcgagaatgttggaacatcatatccaacatctcttagaaatgtcaaaaacat 140  Q
    ||||| ||||| ||||||  | |||| ||||||||||||||||||| ||| || ||||||||||||| ||||||| ||||   ||| ||| |  ||||||    
T  15930274 tataaggcgcgtgtacaaacatgcatgaaacaaggcacactgaaccgtgccaggatgttggaacatcgtatccaatatcttacagagatgcctgaaacat 15930175  T
Q  141 gttgaaacattgtatctaacatcacaatcatgaatatttgttttagcaataatgcagccaatacaa 206  Q
    |||  ||||||||||| |||| ||||| |||||||||||||||||||||||  |||||||||||||    
T  15930174 gtttgaacattgtatcaaacaacacaaacatgaatatttgttttagcaatatagcagccaatacaa 15930109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 202
Target Start/End: Original strand, 19598390 - 19598565
Alignment:
Q  17 atgaagacgtggattccttaaaaatataaagcgcgcgtacaactaggcataaaacaaggcacactgaaccttgcgagaatgttggaacatcatatccaac 116  Q
    |||| |||||||||||||||| || |||||| ||| ||||||  |||||| ||||||||||||||||||| ||  || ||||||||||||| ||||||||    
T  19598390 atgaggacgtggattccttaataaaataaagtgcgtgtacaaacaggcatgaaacaaggcacactgaaccgtgtcaggatgttggaacatcgtatccaac 19598489  T
Q  117 atctcttagaaatgtcaaaaacatgttgaaacattgtatctaacatcacaatcatgaatatttgttttagcaataatgcagccaat 202  Q
    ||||   ||| ||| |          |||||||| ||||| |||||||||| |||| |||||||||||||||||||||||||||||    
T  19598490 atcttacagagatgcc----------tgaaacatagtatccaacatcacaaacatggatatttgttttagcaataatgcagccaat 19598565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 17 - 206
Target Start/End: Original strand, 19658624 - 19658816
Alignment:
Q  17 atgaagacgtggattccttaaaaatataaagcgcgcgtacaactagg----cataaaacaaggcacactgaaccttgcgagaatgttggaacatcatatc 112  Q
    |||| |||||||||||||||| || ||||||| | | |||||| |||     |||||| ||||||||||||| | ||| || ||||||||||||||||||    
T  19658624 atgaggacgtggattccttaataagataaagcacacatacaacaaggaattaataaaataaggcacactgaatcgtgctaggatgttggaacatcatatc 19658723  T
Q  113 caacatctcttagaaatgtcaaaaacatgttgaaacattgtatctaacatcacaatcatgaatatttgttttagcaataatgcagccaatacaa 206  Q
    ||||||||| |  ||||| | ||||||||||| ||||| ||| | ||||||| |  ||||||| |||||  |||||||||||||||||||||||    
T  19658724 caacatctcgtgaaaatgcctaaaacatgttggaacatagtaaccaacatca-acacatgaatttttgtcctagcaataatgcagccaatacaa 19658816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 73 - 206
Target Start/End: Complemental strand, 12385252 - 12385119
Alignment:
Q  73 aggcacactgaaccttgcgagaatgttggaacatcatatccaacatctcttagaaatgtcaaaaacatgttgaaacattgtatctaacatcacaatcatg 172  Q
    |||||||||||||| ||| || ||||||||||||| ||||||||||||   ||| ||| | ||||||||||| |||||||| || || |  |||| ||      
T  12385252 aggcacactgaaccgtgccaggatgttggaacatcgtatccaacatcttacagagatgcctaaaacatgttggaacattgtctccaataatacaaacaat 12385153  T
Q  173 aatatttgttttagcaataatgcagccaatacaa 206  Q
     |||||||||||||||||||||||||||||||||    
T  12385152 gatatttgttttagcaataatgcagccaatacaa 12385119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 54 - 206
Target Start/End: Original strand, 13196070 - 13196223
Alignment:
Q  54 tacaactaggcataaaacaaggcacactgaaccttgcgagaatgttggaacatcatatccaacatctcttagaaatgtc-aaaaacatgttgaaacattg 152  Q
    ||||| ||||||| || | |||||||||||||| ||| || ||||||||||||| ||||||||||||  |||| ||||| ||| |||||||| |||||||    
T  13196070 tacaagtaggcatgaacccaggcacactgaaccgtgccaggatgttggaacatcgtatccaacatcttatagagatgtctaaacacatgttggaacattg 13196169  T
Q  153 tatctaacatcacaatcatgaatatttgttttagcaataatgcagccaatacaa 206  Q
      || ||| |   || || | |||||||||||||||||||||||||||||||||    
T  13196170 gttccaacttacaaaacaaggatatttgttttagcaataatgcagccaatacaa 13196223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 30 - 175
Target Start/End: Complemental strand, 23882136 - 23881990
Alignment:
Q  30 ttccttaaa-aatataaagcgcgcgtacaactaggcataaaacaaggcacactgaaccttgcgagaatgttggaacatcatatccaacatctcttagaaa 128  Q
    ||||||||| |||||||||| || ||||||  |||||| ||||||||||||||||||| ||  || ||||||||||||| ||||||||||||   | | |    
T  23882136 ttccttaaataatataaagcacgtgtacaaacaggcatgaaacaaggcacactgaaccgtgtcaggatgttggaacatcgtatccaacatcttacaaaga 23882037  T
Q  129 tgtcaaaaacatgttgaaacattgtatctaacatcacaatcatgaat 175  Q
    || | |||| |||| | ||||||||||| |||| ||||| |||||||    
T  23882036 tgcctaaaatatgtaggaacattgtatccaacaacacaaacatgaat 23881990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 137 - 211
Target Start/End: Original strand, 24542666 - 24542740
Alignment:
Q  137 acatgttgaaacattgtatctaacatcacaatcatgaatatttgttttagcaataatgcagccaatacaagtact 211  Q
    |||||||| ||||  ||||| |||||||||| |||| |||||||||||||||||||||||| |||||||| ||||    
T  24542666 acatgttggaacaaagtatccaacatcacaaacatggatatttgttttagcaataatgcagtcaatacaaatact 24542740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 137 - 206
Target Start/End: Complemental strand, 3566180 - 3566111
Alignment:
Q  137 acatgttgaaacattgtatctaacatcacaatcatgaatatttgttttagcaataatgcagccaatacaa 206  Q
    |||| ||| ||||| ||||| |||||||||| |||| |||||||| ||||||||||||||||||||||||    
T  3566180 acatattggaacatagtatcgaacatcacaaacatggatatttgtattagcaataatgcagccaatacaa 3566111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 117
Target Start/End: Complemental strand, 17868367 - 17868275
Alignment:
Q  25 gtggattccttaaaaatataaagcgcgcgtacaactaggcataaaacaaggcacactgaaccttgcgagaatgttggaacatcatatccaaca 117  Q
    |||| ||||||||||| |||||| |||||||||| ||||||| |||| |||||||||||||| ||  |  ||||||||||||  |||||||||    
T  17868367 gtggtttccttaaaaagataaagtgcgcgtacaagtaggcatgaaaccaggcacactgaaccgtgtcacgatgttggaacattgtatccaaca 17868275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 117
Target Start/End: Complemental strand, 17878150 - 17878058
Alignment:
Q  25 gtggattccttaaaaatataaagcgcgcgtacaactaggcataaaacaaggcacactgaaccttgcgagaatgttggaacatcatatccaaca 117  Q
    |||| ||||||||||| |||||| |||||||||| ||||||| |||| |||||||||||||| ||  |  ||||||||||||  |||||||||    
T  17878150 gtggtttccttaaaaagataaagtgcgcgtacaagtaggcatgaaaccaggcacactgaaccgtgtcacgatgttggaacattgtatccaaca 17878058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 119
Target Start/End: Original strand, 11961184 - 11961280
Alignment:
Q  23 acgtggattccttaaaaatataaagcgcgcgtacaactaggcataaaacaaggcacactgaaccttgcgagaatgttggaacatcatatccaacatc 119  Q
    ||||| ||||||||| || ||||||| | | |||||  ||||||| |||||| |||||| |||| ||| || ||||||||||||| |||||||||||    
T  11961184 acgtgaattccttaataagataaagcacacttacaatcaggcatagaacaagacacactaaaccgtgccaggatgttggaacatcgtatccaacatc 11961280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 119
Target Start/End: Complemental strand, 18152203 - 18152107
Alignment:
Q  24 cgtggattccttaaaaatataaagcgcgcgtacaactaggcata-aaacaaggcacactgaaccttgcgagaatgttggaacatcatatccaacatc 119  Q
    ||||||||||||||| | |||||||||||||| | || |||| | ||||| ||||||||||||| ||| |  ||||| ||||||| |||||||||||    
T  18152203 cgtggattccttaaatagataaagcgcgcgtaaatcttggcacataaacagggcacactgaaccgtgccaacatgttagaacatcgtatccaacatc 18152107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 206
Target Start/End: Complemental strand, 17868297 - 17868230
Alignment:
Q  139 atgttgaaacattgtatctaacatcacaatcatgaatatttgttttagcaataatgcagccaatacaa 206  Q
    |||||| ||||||||||| |||| || || |||| |||||| |||||||||||||||| |||||||||    
T  17868297 atgttggaacattgtatccaacaacataaacatggatatttattttagcaataatgcaaccaatacaa 17868230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 206
Target Start/End: Complemental strand, 17878080 - 17878013
Alignment:
Q  139 atgttgaaacattgtatctaacatcacaatcatgaatatttgttttagcaataatgcagccaatacaa 206  Q
    |||||| ||||||||||| |||| || || |||| |||||| |||||||||||||||| |||||||||    
T  17878080 atgttggaacattgtatccaacaacataaacatggatatttattttagcaataatgcaaccaatacaa 17878013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 164 - 206
Target Start/End: Complemental strand, 23880993 - 23880951
Alignment:
Q  164 acaatcatgaatatttgttttagcaataatgcagccaatacaa 206  Q
    |||| |||| |||||||||||||||||||||||||||||||||    
T  23880993 acaaacatggatatttgttttagcaataatgcagccaatacaa 23880951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 74 - 203
Target Start/End: Complemental strand, 29253074 - 29252942
Alignment:
Q  74 ggcacactgaaccttgcgagaatgttggaacatcat---atccaacatctcttagaaatgtcaaaaacatgttgaaacattgtatctaacatcacaatca 170  Q
    ||||||||||||| ||| || ||||||||||||| |   |||||||||||   ||| ||| |  || ||||||| |||||||  || |||||||||| ||    
T  29253074 ggcacactgaaccgtgccaggatgttggaacatcgtcgtatccaacatcttaaagacatgcctgaaccatgttggaacattggttccaacatcacaaaca 29252975  T
Q  171 tgaatatttgttttagcaataatgcagccaata 203  Q
    || |||||||||||||||| ||| ||| |||||    
T  29252974 tggatatttgttttagcaacaatacagtcaata 29252942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 73 - 206
Target Start/End: Original strand, 33666556 - 33666688
Alignment:
Q  73 aggcacactgaaccttgcgagaatgttggaacatcatatccaacatctcttagaaatgtc-aaaaacatgttgaaacattgtatctaacatcacaatcat 171  Q
    |||||||||||||| ||| || |||||||| |||||||||||||||||   | | | | | ||| ||||||||||||||||  || ||| | || ||||     
T  33666556 aggcacactgaaccgtgccaggatgttggagcatcatatccaacatcttccaaagacgcctaaacacatgttgaaacattggttccaac-ttac-atcaa 33666653  T
Q  172 gaatatttgttttagcaataatgcagccaatacaa 206  Q
    | |||||||||||||||| ||||||||||||||||    
T  33666654 ggatatttgttttagcaacaatgcagccaatacaa 33666688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 203
Target Start/End: Complemental strand, 17863894 - 17863737
Alignment:
Q  47 gcgcgcgtacaactaggcataaaacaaggcacactgaaccttgcgagaatgttggaacatcatatccaacatctcttagaaatgtcaaaa-acatgttga 145  Q
    |||| ||||||| ||||||| || | |||||  ||||||| ||| |  |||||  |||||||||||| ||||||   ||| ||| | ||| ||||||||     
T  17863894 gcgcacgtacaaataggcatgaacccaggcagtctgaaccgtgctacgatgttaaaacatcatatccgacatcttacagagatgcctaaacacatgttgg 17863795  T
Q  146 aacattgtatctaacatcacaatcatgaatatttgttttagcaataatgcagccaata 203  Q
    |||||||  || |||| ||||| || | |||||||||||||||| |||||||||||||    
T  17863794 aacattggttccaacaacacaaacaaggatatttgttttagcaacaatgcagccaata 17863737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 119
Target Start/End: Complemental strand, 20764447 - 20764351
Alignment:
Q  24 cgtggattccttaaaaatataaagcgcgcgtacaactaggcataaaa-caaggcacactgaaccttgcgagaatgttggaacatcatatccaacatc 119  Q
    ||||| |||||||||||  ||||||||| | | | | || || |||| |||||||||||||||||||| || |||||| ||||| ||||||||||||    
T  20764447 cgtggtttccttaaaaagttaaagcgcgtgaaaaccaagccacaaaaccaaggcacactgaaccttgccaggatgttgaaacattatatccaacatc 20764351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 119
Target Start/End: Complemental strand, 21316992 - 21316941
Alignment:
Q  68 aaacaaggcacactgaaccttgcgagaatgttggaacatcatatccaacatc 119  Q
    ||||| ||||||||||||  ||| || |||||||||||||||||||||||||    
T  21316992 aaacagggcacactgaactatgccaggatgttggaacatcatatccaacatc 21316941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 206
Target Start/End: Complemental strand, 21316934 - 21316900
Alignment:
Q  172 gaatatttgttttagcaataatgcagccaatacaa 206  Q
    ||||||||||||||||||||||| |||||||||||    
T  21316934 gaatatttgttttagcaataatgaagccaatacaa 21316900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 119
Target Start/End: Original strand, 24542399 - 24542465
Alignment:
Q  53 gtacaactaggcataaaacaaggcacactgaaccttgcgagaatgttggaacatcatatccaacatc 119  Q
    |||||| ||||||| || | ||||| ||| |||| ||| |||||||||||||||| |||||||||||    
T  24542399 gtacaagtaggcatgaacccaggcatactaaaccgtgccagaatgttggaacatcgtatccaacatc 24542465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 118
Target Start/End: Complemental strand, 34639605 - 34639555
Alignment:
Q  68 aaacaaggcacactgaaccttgcgagaatgttggaacatcatatccaacat 118  Q
    ||||||||||||||||||| ||| |  ||||||||||||| ||||||||||    
T  34639605 aaacaaggcacactgaaccgtgccaagatgttggaacatcgtatccaacat 34639555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 120
Target Start/End: Complemental strand, 8465087 - 8465014
Alignment:
Q  47 gcgcgcgtacaactaggcataaaacaaggcacactgaaccttgcgagaatgttggaacatcatatccaacatct 120  Q
    |||||||||||| |||| || || | ||||||||| |||| ||| || ||||||||||||  ||||||||||||    
T  8465087 gcgcgcgtacaagtaggaatgaacccaggcacactaaaccgtgccaggatgttggaacattgtatccaacatct 8465014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 206
Target Start/End: Original strand, 20653808 - 20653969
Alignment:
Q  47 gcgcgcgtacaactaggcataaaacaaggcacactgaaccttgcgagaatgttggaacatcatatccaacatctcttagaaatgtcaaaa-acatgttga 145  Q
    ||||||||| || ||||||| || | || ||||||||||| | | || || ||||||||||| |||||||||||  |||| ||| | ||| ||||||||     
T  20653808 gcgcgcgtaaaagtaggcatgaacccagacacactgaaccgttccaggatcttggaacatcacatccaacatcttatagagatgcctaaacacatgttgg 20653907  T
Q  146 aacattgtatctaacat-cacaatcatgaatatttgttttagcaataatgcagccaatacaa 206  Q
    |||||||  |  ||| | ||||   | | |||||||||||||||||||||||| ||||||||    
T  20653908 aacattgatttcaacttacacacataaggatatttgttttagcaataatgcagacaatacaa 20653969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 120
Target Start/End: Complemental strand, 20989210 - 20989137
Alignment:
Q  47 gcgcgcgtacaactaggcataaaacaaggcacactgaaccttgcgagaatgttggaacatcatatccaacatct 120  Q
    |||| ||||||| ||||||| || |||| ||||||||||| || ||| ||||| ||||||| ||||||| ||||    
T  20989210 gcgctcgtacaagtaggcatgaaccaagacacactgaaccgtgtgaggatgtttgaacatcgtatccaatatct 20989137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 211
Target Start/End: Complemental strand, 21705822 - 21705785
Alignment:
Q  174 atatttgttttagcaataatgcagccaatacaagtact 211  Q
    ||||||||||||||||||||||| ||||||||| ||||    
T  21705822 atatttgttttagcaataatgcatccaatacaaatact 21705785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 206
Target Start/End: Complemental strand, 8464959 - 8464927
Alignment:
Q  174 atatttgttttagcaataatgcagccaatacaa 206  Q
    |||||| ||||||||||||||||||||||||||    
T  8464959 atatttattttagcaataatgcagccaatacaa 8464927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 206
Target Start/End: Complemental strand, 11992313 - 11992281
Alignment:
Q  174 atatttgttttagcaataatgcagccaatacaa 206  Q
    |||||||||||||||||||||||||||| ||||    
T  11992313 atatttgttttagcaataatgcagccaacacaa 11992281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 206
Target Start/End: Complemental strand, 21722700 - 21722668
Alignment:
Q  174 atatttgttttagcaataatgcagccaatacaa 206  Q
    ||||||||||||||||||||||||| |||||||    
T  21722700 atatttgttttagcaataatgcagctaatacaa 21722668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 120
Target Start/End: Original strand, 25806176 - 25806220
Alignment:
Q  76 cacactgaaccttgcgagaatgttggaacatcatatccaacatct 120  Q
    ||||||||||| ||| || ||||||||||||| ||||||||||||    
T  25806176 cacactgaaccgtgccaggatgttggaacatcgtatccaacatct 25806220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 86; Significance: 3e-41; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 17 - 202
Target Start/End: Complemental strand, 20254327 - 20254142
Alignment:
Q  17 atgaagacgtggattccttaaaaatataaagcgcgcgtacaactaggcataaaacaaggcacactgaaccttgcgagaatgttggaacatcatatccaac 116  Q
    |||| |||||||||||||||| || ||||| ||||||||||   |||||||||| ||||||||||||||| ||  || ||||||||||||||||||||||    
T  20254327 atgaggacgtggattccttaataagataaaacgcgcgtacattaaggcataaaaaaaggcacactgaaccgtgtcaggatgttggaacatcatatccaac 20254228  T
Q  117 atctcttagaaatgtcaaaaacatgttgaaacattgtatctaacatcacaatcatgaatatttgttttagcaataatgcagccaat 202  Q
    || ||  || |||| | ||||||||||| ||||| ||||| ||||||||||||||| |||||| |||||||||| ||| |||||||    
T  20254227 atttcacaggaatgcctaaaacatgttggaacatagtatccaacatcacaatcatggatatttattttagcaatgatgtagccaat 20254142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 30 - 206
Target Start/End: Original strand, 18622382 - 18622556
Alignment:
Q  30 ttccttaaa-aatataaagcgcgcgtacaactaggcataaaacaaggcacactgaaccttgcgagaatgttggaacatcatatccaacatctcttagaaa 128  Q
    ||||||||| |||||||||||||||||||    ||||  ||||||||||||||||||| ||| |  ||||||||||||| ||||||||||||   ||| |    
T  18622382 ttccttaaataatataaagcgcgcgtacacaccggcaagaaacaaggcacactgaaccgtgccaagatgttggaacatcgtatccaacatcttacagaga 18622481  T
Q  129 tgtcaaaaacatgttgaaacattgtatctaacatcacaatcatgaatatttgttttagcaataatgcagccaatacaa 206  Q
    ||||  |||||||||| ||||| |||||   || ||||| || ||||||||||||||||||||||||| |||||||||    
T  18622482 tgtctgaaacatgttggaacatagtatc---caacacaaacaagaatatttgttttagcaataatgcaaccaatacaa 18622556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 48 - 204
Target Start/End: Original strand, 9997237 - 9997392
Alignment:
Q  48 cgcgcgtacaactaggcataaaacaaggcacactgaaccttgcgagaatgttggaacatcatatccaacatctcttagaaatgtcaaaaacatgttgaaa 147  Q
    ||||||||||| ||||||| |||  |||||||||||||| ||| | ||||| | |||||| ||||||||||||   ||||||| | ||||||||||||||    
T  9997237 cgcgcgtacaaataggcatgaaatcaggcacactgaaccgtgccaaaatgtag-aacatcgtatccaacatcttacagaaatgcctaaaacatgttgaaa 9997335  T
Q  148 cattgtatctaacatcacaatcatgaatatttgttttagcaataatgcagccaatac 204  Q
      ||||||| |||||||||| ||||  ||||||||||||||| |||| |||||||||    
T  9997336 acttgtatccaacatcacaaacatgggtatttgttttagcaacaatgaagccaatac 9997392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 134 - 206
Target Start/End: Original strand, 9997550 - 9997622
Alignment:
Q  134 aaaacatgttgaaacattgtatctaacatcacaatcatgaatatttgttttagcaataatgcagccaatacaa 206  Q
    ||||||||||| ||||| ||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  9997550 aaaacatgttggaacatagtatccaacattacaaacatgaatatttgttttagcaataatgcagccaatacaa 9997622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 30 - 211
Target Start/End: Complemental strand, 27924891 - 27924707
Alignment:
Q  30 ttccttaaa-aatataaagcgcgcgtacaactaggcataaaacaaggcacactgaaccttgcgagaatgttggaacatcatatccaacatctcttagaaa 128  Q
    ||||||||| |||| | |||| |||||||| ||||||| || | |||||||||||| | ||  || ||||||||||||| ||||||||||||   |||||    
T  27924891 ttccttaaacaataaagagcgtgcgtacaagtaggcatgaacccaggcacactgaatcgtgtcaggatgttggaacatcttatccaacatcttacagaaa 27924792  T
Q  129 tgtc-aaaaacatgttgaaacattgtatctaacat-cacaatcatgaatatttgttttagcaataatgcagccaatacaagtact 211  Q
    || | ||| |||||||| |||||||  || ||| | |||||||| | |||||||||| |||||||||||||||| ||||| ||||    
T  27924791 tgcctaaacacatgttggaacattggttccaacttacacaatcaaggatatttgtttcagcaataatgcagccactacaaatact 27924707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 38 - 211
Target Start/End: Original strand, 25241088 - 25241262
Alignment:
Q  38 aaatataaagcgcgcgtacaactaggcataaaacaaggcacactgaaccttgcgagaatgttggaacatcatatccaacatctcttagaaatgtcaaaaa 137  Q
    |||||||| ||||||||| || ||||||| ||   |||||||||||||| | | |||||||||||| ||  | ||||||||||| ||  |||| | |||     
T  25241088 aaatataaggcgcgcgtataaataggcatgaattcaggcacactgaaccgtaccagaatgttggaatattttgtccaacatctcatatgaatgactaaac 25241187  T
Q  138 catgttgaaacattgtatctaacatcacaatca-tgaatatttgttttagcaataatgcagccaatacaagtact 211  Q
    ||| ||  ||| | ||||| |||| |||| | | |||||||||||||||||||||||||| ||||||||| ||||    
T  25241188 cattttcgaacctagtatccaacaacacactaaatgaatatttgttttagcaataatgcaaccaatacaaatact 25241262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 47 - 206
Target Start/End: Complemental strand, 23540827 - 23540667
Alignment:
Q  47 gcgcgcgtacaactaggcataaaacaaggcacactgaaccttgcgagaatgttggaacatcatatccaacatctcttagaaatgtc-aaaaacatgttga 145  Q
    |||||||||||| |||||||||| | ||||||||| |||  ||| || ||||||||||||| |||||| |||||   ||| ||| | ||| ||||||||     
T  23540827 gcgcgcgtacaagtaggcataaacccaggcacactaaactgtgccaggatgttggaacatcgtatccatcatcttacagagatgcctaaacacatgttgg 23540728  T
Q  146 aacattgtatctaacat-cacaatcatgaatatttgttttagcaataatgcagccaatacaa 206  Q
    |||||||  || ||| | ||| |||| | ||||||||||| |||||||||||||||||||||    
T  23540727 aacattggttccaacttacac-atcaaggatatttgttttcgcaataatgcagccaatacaa 23540667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 73 - 211
Target Start/End: Original strand, 33962498 - 33962634
Alignment:
Q  73 aggcacactgaaccttgcgagaatgttggaacatcatatccaacatctcttagaaatgtcaaaa-acatgttgaaacattgtatctaacatcacaatcat 171  Q
    |||||||||||||  ||| || |||||||||||| |||||||||||||   ||| ||| | ||| |||||||| |||||||  || |||| |||||  ||    
T  33962498 aggcacactgaactgtgccaggatgttggaacataatatccaacatcttacagagatgcctaaatacatgttggaacattggttccaacaacacaa--at 33962595  T
Q  172 gaatatttgttttagcaataatgcagccaatacaagtact 211  Q
     ||||||| |||||||||||||||||||||||||| ||||    
T  33962596 -aatatttattttagcaataatgcagccaatacaaatact 33962634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 47 - 211
Target Start/End: Original strand, 33977798 - 33977960
Alignment:
Q  47 gcgcgcgtacaactaggcataaaacaaggcacactgaaccttgcgagaatgttggaacatcatatccaacatctcttagaaatgtcaaaa-acatgttga 145  Q
    |||| ||||||| ||||||| || | || ||||||||||  ||  || |||||||||||| |||||||||||||   ||| ||| | ||| ||||||||     
T  33977798 gcgcacgtacaaataggcatgaacccagacacactgaactgtgtcaggatgttggaacataatatccaacatcttacagagatgcctaaatacatgttgg 33977897  T
Q  146 aacattgtatctaacatcacaatcatgaatatttgttttagcaataatgcagccaatacaagtact 211  Q
    |||||||  || |||| |||||  || ||||||| |||||||||||||||||||||||||| ||||    
T  33977898 aacattggttccaacaacacaa--at-aatatttattttagcaataatgcagccaatacaaatact 33977960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 47 - 206
Target Start/End: Original strand, 26537026 - 26537186
Alignment:
Q  47 gcgcgcgtacaactaggcataaaacaaggcacactgaaccttgcgagaatgttggaacatcatatccaacatctcttagaaatgtc-aaaaacatgttga 145  Q
    |||| ||||||| ||||||| || | || ||||||||||| ||| |  ||||||||||||||||||||||||||    || ||| | ||| |||||||      
T  26537026 gcgcacgtacaaataggcatgaacctagacacactgaaccgtgccatgatgttggaacatcatatccaacatcttacggatatgcctaaacacatgttag 26537125  T
Q  146 aacattgtatctaacatcacaatcatgaatatttgttttagcaataatgcagccaatacaa 206  Q
    || ||||  ||||||| ||||| || | |||||||||||| |||||||||| | |||||||    
T  26537126 aagattggttctaacaacacaaacaaggatatttgttttaacaataatgcaactaatacaa 26537186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 3e-41; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 30 - 206
Target Start/End: Complemental strand, 979818 - 979642
Alignment:
Q  30 ttccttaaaaatataaagcgcgcgtacaactaggcataaaacaaggcacactgaaccttgc-gagaatgttggaacatcatatccaacatctcttagaaa 128  Q
    |||||||| || ||||||||||| |||||  |||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||   |||||    
T  979818 ttccttaataagataaagcgcgcatacaatcaggcataaaacaaggcacactgaaccgtgccgaga-tgttggaacatcatatccaacatcttacagaaa 979720  T
Q  129 tgtcaaaaacatgttgaaacattgtatctaacatcacaatcatgaatatttgttttagcaataatgcagccaatacaa 206  Q
    |  | |||| |||||| ||||| ||||| ||||||||||||||  ||||||||||||||||||||| |||||||||||    
T  979719 tacctaaaatatgttggaacatagtatccaacatcacaatcatagatatttgttttagcaataatgtagccaatacaa 979642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 42 - 206
Target Start/End: Complemental strand, 3551904 - 3551741
Alignment:
Q  42 ataaagcgcgcgtacaactaggcataaaacaaggcacactgaaccttgcgagaatgttggaacatcatatccaacatctcttagaaatgtcaaaaacatg 141  Q
    |||||||||||| ||||  |||||||||||||||||||||||||| ||| |  ||||||||||||||||||||||||||   ||||||||| |||| ||     
T  3551904 ataaagcgcgcgaacaatcaggcataaaacaaggcacactgaaccgtgccacgatgttggaacatcatatccaacatcttacagaaatgtctaaaagat- 3551806  T
Q  142 ttgaaacattgtatctaacatcacaatcatgaatatttgttttagcaataatgcagccaatacaa 206  Q
    ||| || || |||||  ||||||||| |||| |||||||||||||||||||||||||||||||||    
T  3551805 ttggaatatagtatcccacatcacaaacatggatatttgttttagcaataatgcagccaatacaa 3551741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 48 - 206
Target Start/End: Complemental strand, 286319 - 286161
Alignment:
Q  48 cgcgcgtacaactaggcataaaacaaggcacactgaaccttgcgagaatgttggaacatcatatccaacatctcttagaaatgtcaaaaacatgttgaaa 147  Q
    |||||||||||  | |||| ||||||| ||||||||||| ||| || ||||||||||||| ||||||||||||   ||| ||| |  |||||||||| ||    
T  286319 cgcgcgtacaaacatgcatgaaacaagacacactgaaccgtgctaggatgttggaacatcgtatccaacatcttacagagatgcctgaaacatgttggaa 286220  T
Q  148 cattgtatctaacatcacaatcatgaatatttgttttagcaataatgcagccaatacaa 206  Q
    ||| ||||| |||||||||| ||||||||||| |||||||||| |||||||||||||||    
T  286219 catagtatccaacatcacaaacatgaatatttattttagcaatgatgcagccaatacaa 286161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 51 - 204
Target Start/End: Complemental strand, 6578965 - 6578812
Alignment:
Q  51 gcgtacaactaggcataaaacaaggcacactgaaccttgcgagaatgttggaacatcatatccaacatctcttagaaatgtcaaaaacatgttgaaacat 150  Q
    |||||||| |||| || |||| || ||||||||||| ||  || ||||||||||||| ||||||||||||   ||||||| | |||||||||||  |  |    
T  6578965 gcgtacaaataggtatgaaaccagacacactgaaccgtgtcaggatgttggaacatcgtatccaacatcttacagaaatgcctaaaacatgttggcaact 6578866  T
Q  151 tgtatctaacatcacaatcatgaatatttgttttagcaataatgcagccaatac 204  Q
     ||||| |||||||||| ||||| ||||||||||||||| |||| |||||||||    
T  6578865 cgtatccaacatcacaaacatgagtatttgttttagcaacaatgaagccaatac 6578812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 134 - 206
Target Start/End: Complemental strand, 6578654 - 6578582
Alignment:
Q  134 aaaacatgttgaaacattgtatctaacatcacaatcatgaatatttgttttagcaataatgcagccaatacaa 206  Q
    ||||||||||| ||||| ||||| |||||||||| |||| |||||||||||||||||||||||||||||||||    
T  6578654 aaaacatgttggaacatagtatccaacatcacaaacatggatatttgttttagcaataatgcagccaatacaa 6578582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 97 - 206
Target Start/End: Original strand, 21547572 - 21547682
Alignment:
Q  97 gttggaacatcatatccaacatctcttagaaatgtcaaaa-acatgttgaaacattgtatctaacatcacaatcatgaatatttgttttagcaataatgc 195  Q
    ||||||||||| ||||||||||||  |||| |||   ||| |||||||| |||||||  || |||| ||||| || |||||||| |||||||||||||||    
T  21547572 gttggaacatcgtatccaacatcttatagagatgcataaacacatgttggaacattggttccaacaacacaaacaagaatatttattttagcaataatgc 21547671  T
Q  196 agccaatacaa 206  Q
    |||||||||||    
T  21547672 agccaatacaa 21547682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 139 - 211
Target Start/End: Complemental strand, 21253369 - 21253298
Alignment:
Q  139 atgttgaaacattgtatctaacatcacaatcatgaatatttgttttagcaataatgcagccaatacaagtact 211  Q
    |||||| ||||| |||||||||| ||||| |||| |||||||||||||||||||||||| |||||||| ||||    
T  21253369 atgttggaacatcgtatctaacaacacaaacatggatatttgttttagcaataatgcag-caatacaaatact 21253298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 117
Target Start/End: Complemental strand, 21253425 - 21253347
Alignment:
Q  39 aatataaagcgcgcgtacaactaggcataaaacaaggcacactgaaccttgcgagaatgttggaacatcatatccaaca 117  Q
    |||||||||| |||||||||  |||||| ||||||||||||||||||| ||  || ||||||||||||| |||| ||||    
T  21253425 aatataaagcacgcgtacaaacaggcatgaaacaaggcacactgaaccgtgtcaggatgttggaacatcgtatctaaca 21253347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 75 - 206
Target Start/End: Complemental strand, 13515010 - 13514878
Alignment:
Q  75 gcacactgaaccttgcgagaatgttggaacatcatatccaacatctcttagaaatg-tcaaaaacatgttgaaacattgtatctaacat-cacaatcatg 172  Q
    |||||||||||| ||| || ||||||||||||| ||||||||||||   ||| ||| | ||| |||||||| |||||||  || ||| | ||| |||  |    
T  13515010 gcacactgaaccgtgctaggatgttggaacatcgtatccaacatcttacagagatgcttaaacacatgttggaacattggttccaacttacac-atcgag 13514912  T
Q  173 aatatttgttttagcaataatgcagccaatacaa 206  Q
     |||||||||||||||| ||||||||||||||||    
T  13514911 gatatttgttttagcaacaatgcagccaatacaa 13514878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 206
Target Start/End: Complemental strand, 18482665 - 18482633
Alignment:
Q  174 atatttgttttagcaataatgcagccaatacaa 206  Q
    |||||||||||||||||||||||||||||||||    
T  18482665 atatttgttttagcaataatgcagccaatacaa 18482633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 206
Target Start/End: Original strand, 28051925 - 28052037
Alignment:
Q  95 atgttggaacatcatatccaacatctcttagaaatgtcaaaa-acatgttgaaacattgtatctaacatcacaatcatgaatatttgttttagcaataat 193  Q
    ||||||||||||| ||||||||||||   ||| ||| | ||| |||||||| |||||||  || |||| |||||  |   ||||||||||||||||||||    
T  28051925 atgttggaacatcgtatccaacatcttacagagatgcctaaacacatgttggaacattggttccaacaacacaaataaagatatttgttttagcaataat 28052024  T
Q  194 gcagccaatacaa 206  Q
    ||| |||||||||    
T  28052025 gcaaccaatacaa 28052037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 120
Target Start/End: Complemental strand, 18063603 - 18063554
Alignment:
Q  71 caaggcacactgaaccttgcgagaatgttggaacatcatatccaacatct 120  Q
    |||||||||||||||| ||| || |||||||||| || ||||||||||||    
T  18063603 caaggcacactgaaccgtgccaggatgttggaacgtcgtatccaacatct 18063554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 206
Target Start/End: Complemental strand, 7028363 - 7028331
Alignment:
Q  174 atatttgttttagcaataatgcagccaatacaa 206  Q
    |||||||||||||||| ||||||||||||||||    
T  7028363 atatttgttttagcaacaatgcagccaatacaa 7028331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 206
Target Start/End: Complemental strand, 15572298 - 15572266
Alignment:
Q  174 atatttgttttagcaataatgcagccaatacaa 206  Q
    |||||||||||||||| ||||||||||||||||    
T  15572298 atatttgttttagcaacaatgcagccaatacaa 15572266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 206
Target Start/End: Complemental strand, 17135437 - 17135405
Alignment:
Q  174 atatttgttttagcaataatgcagccaatacaa 206  Q
    |||||||||||||||| ||||||||||||||||    
T  17135437 atatttgttttagcaacaatgcagccaatacaa 17135405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 206
Target Start/End: Complemental strand, 23953850 - 23953818
Alignment:
Q  174 atatttgttttagcaataatgcagccaatacaa 206  Q
    |||||||||||||||| ||||||||||||||||    
T  23953850 atatttgttttagcaacaatgcagccaatacaa 23953818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 206
Target Start/End: Original strand, 28052201 - 28052233
Alignment:
Q  174 atatttgttttagcaataatgcagccaatacaa 206  Q
    |||||||||||| ||||||||||||||||||||    
T  28052201 atatttgttttaacaataatgcagccaatacaa 28052233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 7e-39; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 22 - 206
Target Start/End: Complemental strand, 21249643 - 21249458
Alignment:
Q  22 gacgtggattccttaaaaatataaagcgcgcgtacaactaggcataaaacaaggcacactgaaccttgcgagaatgttggaacatcatatccaacatctc 121  Q
    |||||||||||||||| || |||||||||| ||||||  |||||| |||||||||||||| |||| ||| || ||||||||||||| ||||||||||||     
T  21249643 gacgtggattccttaataagataaagcgcgtgtacaatcaggcatgaaacaaggcacactaaaccgtgccaggatgttggaacatcgtatccaacatctt 21249544  T
Q  122 ttagaaatgtcaaaaacatgttgaaacattgtatctaacatcacaatcatgaatatttgttttagcaataa-tgcagccaatacaa 206  Q
      ||||||| |  |||||||||| ||||| ||||| |||| |||||||||| |||||||||||| |||||| ||| ||||||||||    
T  21249543 acagaaatgcctgaaacatgttggaacatagtatccaacaacacaatcatggatatttgttttaccaataattgctgccaatacaa 21249458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 30 - 206
Target Start/End: Original strand, 21531099 - 21531276
Alignment:
Q  30 ttccttaaa-aatataaagcgcgcgtacaactaggcataaaacaaggcacactgaaccttgcgagaatgttggaacatcatatccaacatctcttagaaa 128  Q
    ||||||||| |||| || ||||||||||||  |||||| ||||||||||||| ||||| | | || ||||||||||||  ||||||||||||   ||| |    
T  21531099 ttccttaaataataaaaggcgcgcgtacaaacaggcatgaaacaaggcacaccgaaccataccaggatgttggaacattgtatccaacatcttacagaga 21531198  T
Q  129 tgtcaaaaacatgttgaaacattgtatctaacatcacaatcatgaatatttgttttagcaataatgcagccaatacaa 206  Q
    || |  |||||||||| ||||| ||||  |||| ||||| |||||||||||||||||||||||||||| |||||||||    
T  21531199 tgcctgaaacatgttggaacatagtattcaacaacacaaacatgaatatttgttttagcaataatgcaaccaatacaa 21531276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 49 - 206
Target Start/End: Original strand, 15329061 - 15329218
Alignment:
Q  49 gcgcgtacaactaggcataaaacaaggcacactgaaccttgcgagaatgttggaacatcatatccaacatctcttagaaatgtcaaaaacatgttgaaac 148  Q
    ||||||||||  |||||  | ||| ||||||| ||||| ||| || ||||||||||||| ||||||||||||   ||| ||| |  || ||||||| |||    
T  15329061 gcgcgtacaaacaggcaagatacatggcacacagaaccgtgccaggatgttggaacatcgtatccaacatcttacagacatgcctgaatcatgttggaac 15329160  T
Q  149 attgtatctaacatcacaatcatgaatatttgttttagcaataatgcagccaatacaa 206  Q
    ||||  || |||| ||||| ||||||||||||||||||||| |||| |||||||||||    
T  15329161 attggttccaacaacacaaacatgaatatttgttttagcaacaatgtagccaatacaa 15329218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 119
Target Start/End: Original strand, 27108158 - 27108254
Alignment:
Q  24 cgtggattccttaaaaatataaagcgcgcgtacaactaggcata-aaacaaggcacactgaaccttgcgagaatgttggaacatcatatccaacatc 119  Q
    |||||||||||| || | ||||||||||| || | || |||| | ||||| ||||||||||||| ||| || ||||||||||||| |||||||||||    
T  27108158 cgtggattccttcaatagataaagcgcgcataaatcttggcacataaacatggcacactgaaccgtgccaggatgttggaacatcgtatccaacatc 27108254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 119
Target Start/End: Complemental strand, 19197777 - 19197681
Alignment:
Q  24 cgtggattccttaaaaatataaagcgcgcgtacaactaggcataaaa-caaggcacactgaaccttgcgagaatgttggaacatcatatccaacatc 119  Q
    ||||||||||||||| | |||||||||| ||| | |  |||| | || || ||||||||||||| ||| |  |||||||||||||||||||||||||    
T  19197777 cgtggattccttaaatagataaagcgcgtgtaaatcatggcacataagcagggcacactgaaccgtgctaacatgttggaacatcatatccaacatc 19197681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 119
Target Start/End: Original strand, 27111747 - 27111843
Alignment:
Q  24 cgtggattccttaaaaatataaagcgcgcgtacaactaggcata-aaacaaggcacactgaaccttgcgagaatgttggaacatcatatccaacatc 119  Q
    ||||||||| ||||| | ||||||||| |||| | || |||| | ||||| |||||| |||||| ||| || ||||||||||||| |||||||||||    
T  27111747 cgtggattctttaaatagataaagcgcacgtaaaccttggcacataaacagggcacattgaaccgtgccaggatgttggaacatcgtatccaacatc 27111843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 206
Target Start/End: Original strand, 23759489 - 23759523
Alignment:
Q  172 gaatatttgttttagcaataatgcagccaatacaa 206  Q
    |||||||||||||||||| ||||||||||||||||    
T  23759489 gaatatttgttttagcaacaatgcagccaatacaa 23759523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 204
Target Start/End: Complemental strand, 24311225 - 24311162
Alignment:
Q  139 atgttgaaacattgtatctaacatcacaatcatgaatatttgttttagcaataatgcagccaatac 204  Q
    |||||| ||||||||||| ||||||| |  ||||| ||||||||||||||| |||| |||||||||    
T  24311225 atgttggaacattgtatccaacatcata--catgagtatttgttttagcaacaatgaagccaatac 24311162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 119
Target Start/End: Original strand, 31588201 - 31588291
Alignment:
Q  30 ttccttaaaaatataaagcgcgcgtacaactaggcata-aaacaaggcacactgaaccttgcgagaatgttggaacatcatatccaacatc 119  Q
    ||||||||||| ||||||| |||||| | | ||||| | ||||| ||||||||||||| ||  |  |||||||||||| ||||||||||||    
T  31588201 ttccttaaaaagataaagcacgcgtaaaccaaggcacataaacagggcacactgaaccgtgacaagatgttggaacattatatccaacatc 31588291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 206
Target Start/End: Original strand, 12911359 - 12911391
Alignment:
Q  174 atatttgttttagcaataatgcagccaatacaa 206  Q
    |||||||||||||||| ||||||||||||||||    
T  12911359 atatttgttttagcaacaatgcagccaatacaa 12911391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 203
Target Start/End: Complemental strand, 20645669 - 20645604
Alignment:
Q  136 aacatgttgaaacattgtatctaacatcacaatcatgaatatttgttttagcaataatgcagccaata 203  Q
    ||||||||| ||||| ||||| |||||||    |||||||||||||||||| ||||||| ||||||||    
T  20645669 aacatgttggaacatcgtatccaacatcatg--catgaatatttgttttagaaataatgaagccaata 20645604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 4e-37; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 48 - 206
Target Start/End: Complemental strand, 13941434 - 13941276
Alignment:
Q  48 cgcgcgtacaactaggcataaaacaaggcacactgaaccttgcgagaatgttggaacatcatatccaacatctcttagaaatgtcaaaaacatgttgaaa 147  Q
    |||||||||||  ||||||||||| ||||||| |||||| ||  || ||||||||||||||||||||||||||   | ||||| | ||||||||||| ||    
T  13941434 cgcgcgtacaatcaggcataaaactaggcacattgaaccatgtcaggatgttggaacatcatatccaacatcttacaaaaatgcctaaaacatgttggaa 13941335  T
Q  148 cattgtatctaacatcacaatcatgaatatttgttttagcaataatgcagccaatacaa 206  Q
    ||| ||||| |||| ||||| |||| |||||||||||||||||||||||||||||||||    
T  13941334 catggtatccaacaacacaaacatggatatttgttttagcaataatgcagccaatacaa 13941276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 30 - 206
Target Start/End: Complemental strand, 20714180 - 20714004
Alignment:
Q  30 ttccttaaaaatataaagcgcgcgtacaactaggcataaaacaaggcacactgaaccttgcgagaatgttggaacatcatatccaacatctcttagaaat 129  Q
    ||||||||||| |||||||||||||||||  |||||| ||| |||||||||| |||| | | || ||||||||||||| |||| |||||||  |||| ||    
T  20714180 ttccttaaaaagataaagcgcgcgtacaaacaggcatgaaagaaggcacactaaaccgttccaggatgttggaacatcgtatctaacatcttatagagat 20714081  T
Q  130 gtcaaaaacatgttgaaacattgtatctaacatcacaatcatgaatatttgttttagcaataatgcagccaatacaa 206  Q
    | |  |||||||||| |||||  |||| ||||||  || |||| |||||||||||||||||||||||||||||||||    
T  20714080 gcctgaaacatgttggaacatgatatccaacatcctaaacatggatatttgttttagcaataatgcagccaatacaa 20714004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 73 - 206
Target Start/End: Original strand, 26037542 - 26037676
Alignment:
Q  73 aggcacactgaaccttgcgagaatgttggaacatcatatccaacatctcttagaaatgtcaaaa-acatgttgaaacattgtatctaacatcacaatcat 171  Q
    |||||||||||||| ||| || ||||||||||||| ||||| ||||||   ||| ||| | ||| ||||||||||||||||  || |||| ||||| ||     
T  26037542 aggcacactgaaccatgccaggatgttggaacatcgtatccgacatcttacagagatgcctaaacacatgttgaaacattggttccaacaacacaaacaa 26037641  T
Q  172 gaatatttgttttagcaataatgcagccaatacaa 206  Q
    |||||||||||||||||||||||||||||||||||    
T  26037642 gaatatttgttttagcaataatgcagccaatacaa 26037676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 74 - 206
Target Start/End: Original strand, 38406127 - 38406259
Alignment:
Q  74 ggcacactgaaccttgcgagaatgttggaacatcatatccaacatctcttagaaatgtcaaaaacatgttgaaacattgtatctaacatcacaatcatga 173  Q
    ||||||||||||| ||| || ||| ||||||||| ||||||||||||  |||| ||| |  || ||||||| |||||||  || |||| ||||| || ||    
T  38406127 ggcacactgaaccgtgctaggatgctggaacatcgtatccaacatcttatagacatgcctgaatcatgttggaacattggttccaacaacacaaacaaga 38406226  T
Q  174 atatttgttttagcaataatgcagccaatacaa 206  Q
    ||||||||||||||||||||  | |||||||||    
T  38406227 atatttgttttagcaataataaatccaatacaa 38406259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 74 - 206
Target Start/End: Original strand, 23624607 - 23624739
Alignment:
Q  74 ggcacactgaaccttgcgagaatgttggaacatcatatccaacatctcttagaaatgtcaaaaacatgttgaaacattgtatctaacatcacaatcatga 173  Q
    ||||||||||||| ||| || ||||||||||||| ||||||||||||   ||| |||    || |||||||  ||||||  || |||| || || || |     
T  23624607 ggcacactgaaccgtgccaggatgttggaacatcgtatccaacatcttacagacatgcttgaatcatgttgggacattggttccaacaacagaaacaagg 23624706  T
Q  174 atatttgttttagcaataatgcagccaatacaa 206  Q
    |||||||||||||||||||||||||||||||||    
T  23624707 atatttgttttagcaataatgcagccaatacaa 23624739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 44 - 119
Target Start/End: Original strand, 25674441 - 25674517
Alignment:
Q  44 aaagcgcgcgtacaactaggcata-aaacaaggcacactgaaccttgcgagaatgttggaacatcatatccaacatc 119  Q
    |||||||| ||||||||| ||||| ||||||||||||||||||| ||  | ||||||||||||| ||||||||||||    
T  25674441 aaagcgcgtgtacaactaagcatataaacaaggcacactgaaccatgtcaaaatgttggaacattatatccaacatc 25674517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 75 - 206
Target Start/End: Complemental strand, 22082083 - 22081952
Alignment:
Q  75 gcacactgaaccttgcgagaatgttggaacatcatatccaacatctcttagaaatgtcaaaaacatgttgaaacattgtatctaacatcacaatcatgaa 174  Q
    |||||||||||| ||| || ||||||||||||| ||||||||||||   ||| ||| |  ||| |||||| |||||||  |  |||| ||||| |||| |    
T  22082083 gcacactgaaccgtgccaggatgttggaacatcgtatccaacatcttacagagatgcctgaaatatgttggaacattgatttcaacaacacaaacatgga 22081984  T
Q  175 tatttgttttagcaataatgcagccaatacaa 206  Q
    ||||||||||| ||| ||| ||||||||||||    
T  22081983 tatttgttttaacaacaatacagccaatacaa 22081952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 95 - 203
Target Start/End: Complemental strand, 26328588 - 26328480
Alignment:
Q  95 atgttggaacatcatatccaacatctcttagaaatgtcaaaaacatgttgaaacattgtatctaacatcacaatcatgaatatttgttttagcaataatg 194  Q
    ||||||||||||| |||||||||||||  | | ||  |   ||||||||| |||||||  || |||| ||||  ||||||||||||||||||||||||||    
T  26328588 atgttggaacatcgtatccaacatctcacatagatacctgtaacatgttggaacattggttccaacaacacatacatgaatatttgttttagcaataatg 26328489  T
Q  195 cagccaata 203  Q
    || ||||||    
T  26328488 caaccaata 26328480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 206
Target Start/End: Complemental strand, 23419886 - 23419817
Alignment:
Q  137 acatgttgaaacattgtatctaacatcacaatcatgaatatttgttttagcaataatgcagccaatacaa 206  Q
    ||||||||||||||||   | |||| ||||| || |||||||||||||| ||| ||||||||||||||||    
T  23419886 acatgttgaaacattggtaccaacaacacaaacaagaatatttgttttaacaacaatgcagccaatacaa 23419817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 115
Target Start/End: Complemental strand, 9421936 - 9421868
Alignment:
Q  47 gcgcgcgtacaactaggcataaaacaaggcacactgaaccttgcgagaatgttggaacatcatatccaa 115  Q
    |||||||||||| ||||||| || | |||| ||||||||| ||| || ||||||||||||| |||||||    
T  9421936 gcgcgcgtacaagtaggcatgaacccaggctcactgaaccgtgctaggatgttggaacatcgtatccaa 9421868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 203
Target Start/End: Complemental strand, 17660839 - 17660774
Alignment:
Q  136 aacatgttgaaacattgtatctaacatcacaatcatgaatatttgttttagcaataatgcagccaata 203  Q
    ||||||||| ||||| ||||| |||||||    |||||||||||||||||||||||||| ||||||||    
T  17660839 aacatgttggaacatcgtatccaacatcatg--catgaatatttgttttagcaataatgaagccaata 17660774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 194
Target Start/End: Complemental strand, 20740355 - 20740302
Alignment:
Q  139 atgttgaaacattgtatctaacatcacaatcatgaatatttgttttagcaataatg 194  Q
    |||||| ||||||||||| |||||||||  ||||||||||||||||||||| ||||    
T  20740355 atgttggaacattgtatccaacatcaca--catgaatatttgttttagcaaaaatg 20740302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 120
Target Start/End: Complemental strand, 30605085 - 30605038
Alignment:
Q  73 aggcacactgaaccttgcgagaatgttggaacatcatatccaacatct 120  Q
    |||||||||||||| ||| || ||||||||||||| ||||||||||||    
T  30605085 aggcacactgaaccgtgccaggatgttggaacatcgtatccaacatct 30605038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 206
Target Start/End: Complemental strand, 22251435 - 22251301
Alignment:
Q  73 aggcacactgaaccttgcgagaatgttggaacatcatatccaacatctcttagaaatgtcaaaa-acatgttgaaacattgtatctaacatcacaatcat 171  Q
    |||||||||||||| ||| || |||||||| |||| |||||||||||| | | | | | | ||| |||||||||||| |||  || ||| |   || ||     
T  22251435 aggcacactgaaccgtgccaggatgttggagcatcgtatccaacatctttcaaagacgcctaaacacatgttgaaactttggttccaacttacaaaacaa 22251336  T
Q  172 gaatatttgttttagcaataatgcagccaatacaa 206  Q
    | |||||||||||||||| ||||||||||||||||    
T  22251335 ggatatttgttttagcaacaatgcagccaatacaa 22251301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 120
Target Start/End: Original strand, 24190630 - 24190675
Alignment:
Q  75 gcacactgaaccttgcgagaatgttggaacatcatatccaacatct 120  Q
    |||||||||||| ||| ||||||||||| |||| ||||||||||||    
T  24190630 gcacactgaaccgtgccagaatgttggagcatcgtatccaacatct 24190675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 206
Target Start/End: Original strand, 18221960 - 18222008
Alignment:
Q  158 aacatcacaatcatgaatatttgttttagcaataatgcagccaatacaa 206  Q
    |||| ||||| ||||||||||||||||| ||| |||||| |||||||||    
T  18221960 aacaacacaaacatgaatatttgttttaacaacaatgcatccaatacaa 18222008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 206
Target Start/End: Complemental strand, 22240270 - 22240238
Alignment:
Q  174 atatttgttttagcaataatgcagccaatacaa 206  Q
    |||||||||||||||| ||||||||||||||||    
T  22240270 atatttgttttagcaacaatgcagccaatacaa 22240238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 206
Target Start/End: Complemental strand, 22404053 - 22404021
Alignment:
Q  174 atatttgttttagcaataatgcagccaatacaa 206  Q
    |||||||||||||||| ||||||||||||||||    
T  22404053 atatttgttttagcaacaatgcagccaatacaa 22404021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 206
Target Start/End: Original strand, 24190730 - 24190762
Alignment:
Q  174 atatttgttttagcaataatgcagccaatacaa 206  Q
    |||||||||||||||| ||||||||||||||||    
T  24190730 atatttgttttagcaacaatgcagccaatacaa 24190762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 17 - 189
Target Start/End: Original strand, 32862353 - 32862526
Alignment:
Q  17 atgaagacgtggattccttaaaaatataaagcgcgcgtacaactaggcataaaacaaggcacactgaaccttgcgagaatgttggaacatcatatccaac 116  Q
    |||| |||||||||||||||| |  |||||||||||||||| | | |||||||| ||||||||||||||| |   || ||||||||||||||||||||||    
T  32862353 atgaggacgtggattccttaatatgataaagcgcgcgtacatcaatgcataaaataaggcacactgaaccgtatcaggatgttggaacatcatatccaac 32862452  T
Q  117 atctcttagaaatgtcaaaaacatgttgaaacattgtatctaacatc-acaatcatgaatatttgttttagcaa 189  Q
    ||||| || |||||   ||||||||||| ||||| ||||| |||||| |||  |||| |||||| |||||||||    
T  32862453 atctcgtaaaaatgcataaaacatgttggaacatagtatccaacatcaacacacatggatatttattttagcaa 32862526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 48 - 204
Target Start/End: Original strand, 9069684 - 9069840
Alignment:
Q  48 cgcgcgtacaactaggcataaaacaaggcacactgaaccttgcgagaatgttggaacatcatatccaacatctcttagaaatgtcaaaaacatgttgaaa 147  Q
    |||| |||||| ||||||| |||  |||||||||||||| | | || ||||||||||||| ||||||||||||   ||||||| | ||||||||||| ||    
T  9069684 cgcgagtacaaataggcatgaaatcaggcacactgaaccgttccaggatgttggaacatcgtatccaacatcttacagaaatgccgaaaacatgttggaa 9069783  T
Q  148 cattgtatctaacatcacaatcatgaatatttgttttagcaataatgcagccaatac 204  Q
      ||||||| |||||||||| ||||  ||||||||||||||| |||| || ||||||    
T  9069784 acttgtatccaacatcacaaacatgggtatttgttttagcaacaatgaagtcaatac 9069840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 134 - 206
Target Start/End: Original strand, 10683252 - 10683324
Alignment:
Q  134 aaaacatgttgaaacattgtatctaacatcacaatcatgaatatttgttttagcaataatgcagccaatacaa 206  Q
    ||||||||||| ||||| ||||| |||||||||| |||| |||||||||||||||||||||||||||||||||    
T  10683252 aaaacatgttggaacatagtatccaacatcacaaacatggatatttgttttagcaataatgcagccaatacaa 10683324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 134 - 206
Target Start/End: Original strand, 10896892 - 10896964
Alignment:
Q  134 aaaacatgttgaaacattgtatctaacatcacaatcatgaatatttgttttagcaataatgcagccaatacaa 206  Q
    ||||||||||| ||||| ||||| |||||||||| |||| |||||||||||||||||||||||||||||||||    
T  10896892 aaaacatgttggaacatagtatccaacatcacaaacatggatatttgttttagcaataatgcagccaatacaa 10896964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 75 - 206
Target Start/End: Complemental strand, 19183074 - 19182943
Alignment:
Q  75 gcacactgaaccttgcgagaatgttggaacatcatatccaacatctcttagaaatgtcaaaaacatgttgaaacattgtatctaacatcacaatcatgaa 174  Q
    |||||||||||| ||| || ||||  ||||||| ||||||||||||   ||| ||| | ||||||||||| ||||||||||| |||| |||||  | | |    
T  19183074 gcacactgaaccgtgccaggatgtcagaacatcgtatccaacatcttacagagatgcctaaaacatgttggaacattgtatccaacaacacaagtaagga 19182975  T
Q  175 tatttgttttagcaataatgcagccaatacaa 206  Q
    |||||||||||||||||||| |||||||||||    
T  19182974 tatttgttttagcaataatgtagccaatacaa 19182943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 17 - 120
Target Start/End: Original strand, 41786142 - 41786245
Alignment:
Q  17 atgaagacgtggattccttaaaaatataaagcgcgcgtacaactaggcataaaacaaggcacactgaaccttgcgagaatgttggaacatcatatccaac 116  Q
    |||| ||| |||||||||||| || ||||||||||||||   | |||||||||||||| || |||||||| ||| || ||||||||||||||||||||||    
T  41786142 atgaggacatggattccttaataagataaagcgcgcgtagtgcaaggcataaaacaagacatactgaaccgtgccaggatgttggaacatcatatccaac 41786241  T
Q  117 atct 120  Q
    ||||    
T  41786242 atct 41786245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 134 - 206
Target Start/End: Original strand, 10723303 - 10723375
Alignment:
Q  134 aaaacatgttgaaacattgtatctaacatcacaatcatgaatatttgttttagcaataatgcagccaatacaa 206  Q
    ||||||||||| ||||| ||||| |||||||||| |||| ||||||||||||||||||||| |||||||||||    
T  10723303 aaaacatgttggaacatagtatccaacatcacaaacatggatatttgttttagcaataatgtagccaatacaa 10723375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 134 - 206
Target Start/End: Original strand, 10937072 - 10937144
Alignment:
Q  134 aaaacatgttgaaacattgtatctaacatcacaatcatgaatatttgttttagcaataatgcagccaatacaa 206  Q
    ||||||||||| ||||| ||||| |||||||||| |||| ||||||||||||||||||||| |||||||||||    
T  10937072 aaaacatgttggaacatagtatccaacatcacaaacatggatatttgttttagcaataatgtagccaatacaa 10937144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 206
Target Start/End: Original strand, 15623145 - 15623334
Alignment:
Q  17 atgaagacgtggattccttaaaaatataaagcgcgcgtacaactaggcataaaacaaggcacactgaaccttgcgagaatgttggaacatcatatccaac 116  Q
    |||| ||||||||||||  || || |||||| ||||  |||| |||||||  | | ||||| ||| |||| ||| || ||||||||||||| ||||||||    
T  15623145 atgaggacgtggattccccaataagataaagtgcgcaaacaagtaggcatgtacctaggcatacttaaccgtgccaggatgttggaacatcgtatccaac 15623244  T
Q  117 atctcttagaaatgtcaaaaacatgttgaaacattgtatctaacatcacaatcatgaatatttgttttagcaataatgcagccaatacaa 206  Q
    ||||   ||||||| | ||||||||||| | ||| ||||| |||  |||||  ||| |||||| |||| ||||||||||| |||||||||    
T  15623245 atcttacagaaatgcctaaaacatgttggatcatagtatccaactacacaaagatggatatttattttggcaataatgcaaccaatacaa 15623334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 134 - 206
Target Start/End: Original strand, 10718479 - 10718551
Alignment:
Q  134 aaaacatgttgaaacattgtatctaacatcacaatcatgaatatttgttttagcaataatgcagccaatacaa 206  Q
    ||||||||||| ||||| ||||| |||||| ||| |||| ||||||| |||||||||||||||||||||||||    
T  10718479 aaaacatgttggaacatagtatccaacatcgcaaacatggatatttgctttagcaataatgcagccaatacaa 10718551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 134 - 206
Target Start/End: Original strand, 10932248 - 10932320
Alignment:
Q  134 aaaacatgttgaaacattgtatctaacatcacaatcatgaatatttgttttagcaataatgcagccaatacaa 206  Q
    ||||||||||| ||||| ||||| |||||| ||| |||| ||||||| |||||||||||||||||||||||||    
T  10932248 aaaacatgttggaacatagtatccaacatcgcaaacatggatatttgctttagcaataatgcagccaatacaa 10932320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 134 - 206
Target Start/End: Original strand, 33744492 - 33744564
Alignment:
Q  134 aaaacatgttgaaacattgtatctaacatcacaatcatgaatatttgttttagcaataatgcagccaatacaa 206  Q
    ||||||||||| |||||  |||| |||||||||| |||  |||||||||||||||||||||||||||||||||    
T  33744492 aaaacatgttggaacataatatccaacatcacaaacatatatatttgttttagcaataatgcagccaatacaa 33744564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 52 - 206
Target Start/End: Original strand, 10724942 - 10725096
Alignment:
Q  52 cgtacaactaggcataaaacaaggcacactgaaccttgcgagaatgttggaacatcatatccaacatctcttagaaatgtcaaaa-acatgttgaaacat 150  Q
    ||||||| ||||||| || |||| |||||| |||  ||| || ||||||||||||| ||||||||||||   ||| ||| | | | | |||||| |||||    
T  10724942 cgtacaaataggcatgaaccaag-cacactaaactgtgccaggatgttggaacatcgtatccaacatcttacagagatgcctacacatatgttggaacat 10725040  T
Q  151 tgtatctaacatcacaatcatgaatatttgttttagcaataatgcagccaatacaa 206  Q
    ||  || |||| ||||| || | |||||||||||||||||||||||||||||||||    
T  10725041 tggttccaacaacacaaacaaggatatttgttttagcaataatgcagccaatacaa 10725096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 52 - 206
Target Start/End: Original strand, 10938711 - 10938865
Alignment:
Q  52 cgtacaactaggcataaaacaaggcacactgaaccttgcgagaatgttggaacatcatatccaacatctcttagaaatgtcaaaa-acatgttgaaacat 150  Q
    ||||||| ||||||| || |||| |||||| |||  ||| || ||||||||||||| ||||||||||||   ||| ||| | | | | |||||| |||||    
T  10938711 cgtacaaataggcatgaaccaag-cacactaaactgtgccaggatgttggaacatcgtatccaacatcttacagagatgcctacacatatgttggaacat 10938809  T
Q  151 tgtatctaacatcacaatcatgaatatttgttttagcaataatgcagccaatacaa 206  Q
    ||  || |||| ||||| || | |||||||||||||||||||||||||||||||||    
T  10938810 tggttccaacaacacaaacaaggatatttgttttagcaataatgcagccaatacaa 10938865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 119
Target Start/End: Complemental strand, 10197692 - 10197596
Alignment:
Q  24 cgtggattccttaaaaatataaagcgcgcgtacaactaggcata-aaacaaggcacactgaaccttgcgagaatgttggaacatcatatccaacatc 119  Q
    ||||||| |||||| || |||||| | ||||| | ||||||| | ||||| ||||||||||||| ||| |  |||||||||||||||||||||||||    
T  10197692 cgtggatgccttaataagataaagtgtgcgtatagctaggcaaataaacatggcacactgaaccgtgccaagatgttggaacatcatatccaacatc 10197596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 74 - 206
Target Start/End: Complemental strand, 15699729 - 15699597
Alignment:
Q  74 ggcacactgaaccttgcgagaatgttggaacatcatatccaacatctcttagaaatgtcaaaaacatgttgaaacattgtatctaacatcacaatcatga 173  Q
    ||||||||||||  ||| || |||||||||||||  |||||||||||  | || |||    || ||||||| ||||||| ||| |||| ||||| || |     
T  15699729 ggcacactgaactgtgccaggatgttggaacatcggatccaacatcttatggacatgcttgaaccatgttggaacattgcatccaacaacacaaacaagg 15699630  T
Q  174 atatttgttttagcaataatgcagccaatacaa 206  Q
    ||||||||||||| || ||||||||||||||||    
T  15699629 atatttgttttagtaacaatgcagccaatacaa 15699597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 101 - 206
Target Start/End: Complemental strand, 15161869 - 15161763
Alignment:
Q  101 gaacatcatatccaacatctcttagaaatgtcaaaa-acatgttgaaacattgtatctaacatcacaatcatgaatatttgttttagcaataatgcagcc 199  Q
    ||||||| ||||||||||||   ||| ||| | ||| |||||||| |||||||  || |||| ||||| || | |||||||||||| |||||||||||||    
T  15161869 gaacatcgtatccaacatcttacagagatgcctaaacacatgttggaacattggttccaacaacacaaacaaggatatttgttttaacaataatgcagcc 15161770  T
Q  200 aatacaa 206  Q
    |||||||    
T  15161769 aatacaa 15161763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 206
Target Start/End: Original strand, 41786276 - 41786321
Alignment:
Q  161 atcacaatcatgaatatttgttttagcaataatgcagccaatacaa 206  Q
    ||||||  |||| |||||||||||||||||||||||||||||||||    
T  41786276 atcacatacatggatatttgttttagcaataatgcagccaatacaa 41786321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 205
Target Start/End: Complemental strand, 16654639 - 16654603
Alignment:
Q  169 catgaatatttgttttagcaataatgcagccaataca 205  Q
    |||||||||||||||||||||||||| ||||||||||    
T  16654639 catgaatatttgttttagcaataatgaagccaataca 16654603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 118
Target Start/End: Original strand, 10718235 - 10718285
Alignment:
Q  68 aaacaaggcacactgaaccttgcgagaatgttggaacatcatatccaacat 118  Q
    ||||| ||||||||||||| ||| || ||||||||||||| ||||||||||    
T  10718235 aaacagggcacactgaaccgtgccaggatgttggaacatcgtatccaacat 10718285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 118
Target Start/End: Original strand, 10932004 - 10932054
Alignment:
Q  68 aaacaaggcacactgaaccttgcgagaatgttggaacatcatatccaacat 118  Q
    ||||| ||||||||||||| ||| || ||||||||||||| ||||||||||    
T  10932004 aaacagggcacactgaaccgtgccaggatgttggaacatcgtatccaacat 10932054  T

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Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 206
Target Start/End: Original strand, 16384757 - 16384789
Alignment:
Q  174 atatttgttttagcaataatgcagccaatacaa 206  Q
    |||||||||||||||| ||||||||||||||||    
T  16384757 atatttgttttagcaacaatgcagccaatacaa 16384789  T

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Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 203
Target Start/End: Complemental strand, 18006130 - 18006065
Alignment:
Q  136 aacatgttgaaacattgtatctaacatcacaatcatgaatatttgttttagcaataatgcagccaata 203  Q
    ||||||||| ||||| ||||| |||||||    |||||||||||||||||| ||||||| ||||||||    
T  18006130 aacatgttggaacatcgtatccaacatcatg--catgaatatttgttttagaaataatgaagccaata 18006065  T

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Target: scaffold0035 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 28 - 206
Target Start/End: Original strand, 38025 - 38203
Alignment:
Q  28 gattccttaaaaatataaagcgcgcgtacaactaggcataaaacaaggcacactgaaccttgcgagaatgttggaacatcatatccaacatctcttagaa 127  Q
    |||||||||| || |||||||||||||||||  | ||||||||||||| ||||| |||  ||| || ||||||||||||| ||||||||||||   | ||    
T  38025 gattccttaataagataaagcgcgcgtacaatcaagcataaaacaaggtacacttaactgtgccaggatgttggaacatcgtatccaacatcttacataa 38124  T
Q  128 atgtcaaaaacatgttgaaacattgtatctaacatcacaatcatgaatatttgttttagcaataatgcagccaatacaa 206  Q
    |||    | ||||| || ||||||||||| || ||||||| | |  |||||||||||||||||||||||||||||||||    
T  38125 atgcttgagacatgatggaacattgtatccaatatcacaaacttatatatttgttttagcaataatgcagccaatacaa 38203  T

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Target: scaffold0213 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0213
Description:

Target: scaffold0213; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 30 - 206
Target Start/End: Complemental strand, 8017 - 7839
Alignment:
Q  30 ttccttaaa-aatataaagcgcgcgtacaactaggcataaaacaaggcacactgaaccttgcgagaatgttggaacatcatatccaacatctcttagaaa 128  Q
    ||||||||| |||| | |||| |||||||| ||||||| || | |||||||||||||  |||  | ||||| ||||||| ||| ||||||||  |||| |    
T  8017 ttccttaaacaataaagagcgggcgtacaaataggcatgaacccaggcacactgaacagtgccgggatgttcgaacatcgtatgcaacatcttatagaga 7918  T
Q  129 tg-tcaaaaacatgttgaaacattgtatctaacatcacaatcatgaatatttgttttagcaataatgcagccaatacaa 206  Q
    || | ||| |||||||| |||||||  || |||| |||||  | | |||||||||||||||||||||||||||||||||    
T  7917 tgcttaaacacatgttggaacattggttccaacaacacaaataaggatatttgttttagcaataatgcagccaatacaa 7839  T

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Target: scaffold0008 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 138 - 206
Target Start/End: Original strand, 36571 - 36639
Alignment:
Q  138 catgttgaaacattgtatctaacatcacaatcatgaatatttgttttagcaataatgcagccaatacaa 206  Q
    ||||||| |||||  |||| |||||||||| |||| |||||||||||||||||||||||||||||||||    
T  36571 catgttggaacatattatccaacatcacaaacatggatatttgttttagcaataatgcagccaatacaa 36639  T

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Target: scaffold0226 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: scaffold0226
Description:

Target: scaffold0226; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 42 - 206
Target Start/End: Complemental strand, 6965 - 6799
Alignment:
Q  42 ataaagcgcgcgtacaactaggcataaaacaaggcacactgaaccttgcga-gaatgttggaacatcatatccaacatctcttagaaatgtc-aaaaaca 139  Q
    |||||| |||||||||| ||||||| || | || ||||||||||| ||| | | ||||||||||||||||||||| ||||   | | ||| | ||| |||    
T  6965 ataaagggcgcgtacaaataggcatgaacccagacacactgaaccgtgccaaggatgttggaacatcatatccaaaatcttacaaagatggctaaacaca 6866  T
Q  140 tgttgaaacattgtatctaacatcacaatcatgaatatttgttttagcaataatgcagccaatacaa 206  Q
    ||||| |||||||  || |||| ||||| || | ||||||| ||||||||||||| |||||||||||    
T  6865 tgttggaacattggttccaacaacacaaacaaggatatttgctttagcaataatgtagccaatacaa 6799  T

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Target: scaffold0226; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 73 - 206
Target Start/End: Complemental strand, 17519 - 17385
Alignment:
Q  73 aggcacactgaaccttgcgagaatgttggaacatcatatccaacatctcttagaaatgtcaaaa-acatgttgaaacattgtatctaacatcacaatcat 171  Q
    |||||||||||||| ||  || |||||||||||||||||| |||||||   ||| ||  | ||| |||||||| |||||||  || |||| ||||| ||     
T  17519 aggcacactgaaccgtggtaggatgttggaacatcatatctaacatcttacagagatacctaaacacatgttggaacattggttccaacaacacaaacaa 17420  T
Q  172 gaatatttgttttagcaataatgcagccaatacaa 206  Q
    | |||||||||||||||||||||||| ||||||||    
T  17419 ggatatttgttttagcaataatgcagtcaatacaa 17385  T

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Target: scaffold0226; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 73 - 206
Target Start/End: Complemental strand, 26913 - 26779
Alignment:
Q  73 aggcacactgaaccttgcgagaatgttggaacatcatatccaacatctcttagaaatgtcaaaa-acatgttgaaacattgtatctaacatcacaatcat 171  Q
    |||||||||||||| ||  || |||||||||||||||||| |||||||   ||| ||  | ||| |||||||| |||||||  || |||| ||||| ||     
T  26913 aggcacactgaaccgtggtaggatgttggaacatcatatctaacatcttacagagatacctaaacacatgttggaacattggttccaacaacacaaacaa 26814  T
Q  172 gaatatttgttttagcaataatgcagccaatacaa 206  Q
    | |||||||||||||||||||||||| ||||||||    
T  26813 ggatatttgttttagcaataatgcagtcaatacaa 26779  T

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Target: scaffold0520 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0520
Description:

Target: scaffold0520; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 119
Target Start/End: Original strand, 5727 - 5778
Alignment:
Q  68 aaacaaggcacactgaaccttgcgagaatgttggaacatcatatccaacatc 119  Q
    ||||| ||||||||||||| ||| || |||||||||||||||||||||||||    
T  5727 aaacagggcacactgaaccatgccaggatgttggaacatcatatccaacatc 5778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0520; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 119
Target Start/End: Original strand, 11982 - 12033
Alignment:
Q  68 aaacaaggcacactgaaccttgcgagaatgttggaacatcatatccaacatc 119  Q
    ||||| ||||||||||||| ||| || |||||||||||||||||||||||||    
T  11982 aaacagggcacactgaaccatgccaggatgttggaacatcatatccaacatc 12033  T

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Target: scaffold0185 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0185
Description:

Target: scaffold0185; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 120
Target Start/End: Complemental strand, 1762 - 1715
Alignment:
Q  73 aggcacactgaaccttgcgagaatgttggaacatcatatccaacatct 120  Q
    |||||||||||||| ||| |||||||||||||||| ||||||||||||    
T  1762 aggcacactgaaccgtgccagaatgttggaacatcgtatccaacatct 1715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0185; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 206
Target Start/End: Complemental strand, 1660 - 1628
Alignment:
Q  174 atatttgttttagcaataatgcagccaatacaa 206  Q
    |||||||||||||||||||||||||||||||||    
T  1660 atatttgttttagcaataatgcagccaatacaa 1628  T

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Target: scaffold0453 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0453
Description:

Target: scaffold0453; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 120
Target Start/End: Complemental strand, 1395 - 1348
Alignment:
Q  73 aggcacactgaaccttgcgagaatgttggaacatcatatccaacatct 120  Q
    |||||||||||||| ||| || |||||||| |||||||||||||||||    
T  1395 aggcacactgaaccatgctaggatgttggagcatcatatccaacatct 1348  T

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Target: scaffold0190 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 120
Target Start/End: Complemental strand, 16059 - 15968
Alignment:
Q  30 ttccttaaa-aatataaagcgcgcgtacaactaggcataaaacaaggcacactgaaccttgcgagaatgttggaacatcatatccaacatct 120  Q
    ||||||||| |||| | ||||| ||||||| |||| || || | |||||||| ||||| ||| || ||||||||||||| ||||||||||||    
T  16059 ttccttaaacaataaagagcgcacgtacaagtaggaatgaacccaggcacaccgaaccgtgccaggatgttggaacatcgtatccaacatct 15968  T

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Target: scaffold0129 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 120
Target Start/End: Original strand, 16270 - 16317
Alignment:
Q  73 aggcacactgaaccttgcgagaatgttggaacatcatatccaacatct 120  Q
    |||||||||||||| ||| || ||||||||||||| ||||||||||||    
T  16270 aggcacactgaaccgtgccaggatgttggaacatcgtatccaacatct 16317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0359 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0359
Description:

Target: scaffold0359; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 206
Target Start/End: Original strand, 2756 - 2788
Alignment:
Q  174 atatttgttttagcaataatgcagccaatacaa 206  Q
    |||||||||||||||| ||||||||||||||||    
T  2756 atatttgttttagcaacaatgcagccaatacaa 2788  T

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Target: scaffold0103 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 206
Target Start/End: Complemental strand, 24970 - 24938
Alignment:
Q  174 atatttgttttagcaataatgcagccaatacaa 206  Q
    |||||||||||||||| ||||||||||||||||    
T  24970 atatttgttttagcaacaatgcagccaatacaa 24938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 206
Target Start/End: Complemental strand, 47683 - 47651
Alignment:
Q  174 atatttgttttagcaataatgcagccaatacaa 206  Q
    |||||||||||||||| ||||||||||||||||    
T  47683 atatttgttttagcaacaatgcagccaatacaa 47651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 206
Target Start/End: Original strand, 159938 - 159970
Alignment:
Q  174 atatttgttttagcaataatgcagccaatacaa 206  Q
    |||||||||||||||| ||||||||||||||||    
T  159938 atatttgttttagcaacaatgcagccaatacaa 159970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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