View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17191_low_3 (Length: 411)
Name: NF17191_low_3
Description: NF17191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17191_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 310; Significance: 1e-174; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 401
Target Start/End: Complemental strand, 24978461 - 24978061
Alignment:
| Q |
1 |
atttagttttgtttttcctgtctgaggtccatggtaaccaatgaaaattgtgtccatatgacatggtctaggctcgggtgtggtcatcgtcacaagtttc |
100 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
24978461 |
atttagttttgttcttcctgtctgaggtccatggtaaccaatgaaaattgtgtccatatgacgtggtctaggctcgggtgtggtcatcgtcacaagtttc |
24978362 |
T |
|
| Q |
101 |
aatctacacaacacaaggataagtcatgttagattagccagtttagtgaagtcttctttaaaaatagactcgttttgccaagttcaaaagtgcnnnnnnn |
200 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||| |
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| T |
24978361 |
aatatacacaacacaaggataagtcatgttagattagccggtttagtgaagtcttccttaaaaatagattcgttttgccaagttcaaaagtgcaaaaaaa |
24978262 |
T |
|
| Q |
201 |
nngatcataaacctagtttgcctctccacaataaatctcacacttgtatctctctgaatcagatttgttatatactaaagcttccggttgattatacaaa |
300 |
Q |
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|||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |
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| T |
24978261 |
aatatcataaaaccaatttgcctctccacaataaatctcacacttgtatctctctgaatcagatttgttatatattaaagcttccagttgattatacaaa |
24978162 |
T |
|
| Q |
301 |
aagtaattaattaattagtatacatttttaaaaagaaacaattctcttacttaagataacccaccgtaattaggatctttgaccccaataatcgtcctat |
400 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
24978161 |
aagtaattaattaattagtatacatttttaaaacgaaacaattatcttacttaagataacccaatgtaattaggatctttgaccccaataatcgtcctat |
24978062 |
T |
|
| Q |
401 |
g |
401 |
Q |
| |
|
| |
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|
| T |
24978061 |
g |
24978061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 392
Target Start/End: Complemental strand, 24977023 - 24976639
Alignment:
| Q |
1 |
atttagttttgtttttcctgtctgaggtccatggtaaccaatgaaaattgtgtccatatgacatggtctaggctcgggtgtggtcatcgtcacaagtttc |
100 |
Q |
| |
|
|||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||| ||||||||||| |
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| T |
24977023 |
atttagttttgtccatcctatccgaggtccatggtaaccaatgaaaattgtgtccatatgacgtggtccaagctcgggtgtggtcatcatcacaagtttc |
24976924 |
T |
|
| Q |
101 |
aatctacacaacacaaggataagtcatgttagattagccagtttagtgaagtcttctttaaaaatagactcgttttgccaagttcaaaagtgcnnnnnnn |
200 |
Q |
| |
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||||||||||||||||||||||| ||| | ||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||| |
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| T |
24976923 |
aatctacacaacacaaggataagcaatgctggattagccagtttagtgaagtcttccttaaaaatagactcgtttcgccaagtgcaaaa-------aaaa |
24976831 |
T |
|
| Q |
201 |
nngatcataaacctagtttgcctctccacaataaatctcacacttgtatctctctgaatcagatttgttatatactaaagcttccggttgattatacaaa |
300 |
Q |
| |
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|||||||| ||||||||||| ||||| ||||| ||||||||||||||||| |||||||||||||||| | | |||||||||| ||||||||| |||| |
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| T |
24976830 |
tatatcataaaactagtttgcctttccacgataaagctcacacttgtatctctttgaatcagatttgttacacattaaagcttccagttgattattcaaa |
24976731 |
T |
|
| Q |
301 |
aagtaattaattaattagtatacatttttaaaaagaaacaattctcttacttaagataacccaccgtaattaggatctttgaccccaataat |
392 |
Q |
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||| |||||||||| || ||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||| |
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| T |
24976730 |
aagcaattaattaagtattatacatttttaaaaagaaacaattatcttatttatgataacccaccgtaattaggatctttgaccccaataat |
24976639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 31 - 285
Target Start/End: Complemental strand, 24979841 - 24979582
Alignment:
| Q |
31 |
atggtaaccaatgaaaattgtgtccatatgacatggtctaggctcgggtgtggtcatcgtcacaagtttcaatctacacaacacaaggataagtcatgtt |
130 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||| |||||| |||||| |||||| ||||||| ||||||| ||| | |
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| T |
24979841 |
atggtaaccaatgaaaattgtgtccatatgacgtggtccaggctcgggtgtagtcattgtcacatgtttcagtctacataacacaacgataagttatgat |
24979742 |
T |
|
| Q |
131 |
agattagccagtttagtgaagtcttctttaaaaatagactcgttttgccaagttcaaaagtgc------nnnnnnnnngatcataaacctagtttgcctc |
224 |
Q |
| |
|
||||| || || ||| |||| ||| |||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||| |
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| T |
24979741 |
ggattaaccggtctagcgaag-ctttcttaaaaatagactcgttttgccaagtccaaaagtgcaaaaaaaaaaaaaaaaatcataaaactagtttgcctc |
24979643 |
T |
|
| Q |
225 |
tccacaataaatctcacacttgtatctctctgaatcagatttgttatatactaaagcttcc |
285 |
Q |
| |
|
|||| |||||| |||||||| |||||||| |||||||||||||||||| |||||||||| |
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| T |
24979642 |
tccatgataaatatcacacttttatctctcaaaatcagatttgttatatattaaagcttcc |
24979582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 276 - 334
Target Start/End: Complemental strand, 24979562 - 24979504
Alignment:
| Q |
276 |
taaagcttccggttgattatacaaaaagtaattaattaattagtatacatttttaaaaa |
334 |
Q |
| |
|
|||||||||| ||||||||| ||||| ||||||||||| || |||||||||||||||| |
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|
| T |
24979562 |
taaagcttccaattgattatataaaaattaattaattaagtattatacatttttaaaaa |
24979504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 319 - 391
Target Start/End: Complemental strand, 24976111 - 24976040
Alignment:
| Q |
319 |
tatacatttttaaaaagaaacaattctcttacttaagataacccaccgtaattaggatctttgaccccaataa |
391 |
Q |
| |
|
|||| |||||||||||| | ||||| ||||| ||| |||||| |||||||||||||| |||||| ||||||| |
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|
| T |
24976111 |
tatatatttttaaaaaggagcaattatcttatttatgataacataccgtaattaggat-tttgactccaataa |
24976040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 386
Target Start/End: Complemental strand, 26641963 - 26641935
Alignment:
| Q |
358 |
aacccaccgtaattaggatctttgacccc |
386 |
Q |
| |
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||||||||||||||||||||||||||||| |
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|
| T |
26641963 |
aacccaccgtaattaggatctttgacccc |
26641935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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