View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17191_low_9 (Length: 241)
Name: NF17191_low_9
Description: NF17191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17191_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 169; Significance: 9e-91; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 18 - 226
Target Start/End: Complemental strand, 24978720 - 24978512
Alignment:
| Q |
18 |
agaaccatagtcgaaatctcatttatagaagcagacttactagtaaccattataataaatgtgtattttagagttacttttcacaataagattagaaacg |
117 |
Q |
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| T |
24978720 |
agaaccatagtcgaaatctcatttatagaaccagacttactagtaaccattataataaatgtgtattttacagtcacttttcacaataagattagaaacg |
24978621 |
T |
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| Q |
118 |
ccatctcttcggaccatatacaagtcaatgtatatgccccacattttagcttgtagggcatcacacattccaaattttcaaatgtatccttcaatccatc |
217 |
Q |
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|||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||| | ||||||||||||| |||||||| ||||||||| |
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| T |
24978620 |
ccatctcttcgggccatatacaagccaatgtatatgccccatattttagcttgtagggcatcacaaactccaaattttcaagtgtatcctgcaatccatc |
24978521 |
T |
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| Q |
218 |
taccctttg |
226 |
Q |
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||||||||| |
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| T |
24978520 |
taccctttg |
24978512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 18 - 226
Target Start/End: Complemental strand, 24977282 - 24977074
Alignment:
| Q |
18 |
agaaccatagtcgaaatctcatttatagaagcagacttactagtaaccattataataaatgtgtattttagagttacttttcacaataagattagaaacg |
117 |
Q |
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|||||||||||| || |||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||| ||||| |||| | | |||| ||||| |
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| T |
24977282 |
agaaccatagtcaaactctcatttatagaagcaggcttattagtaaccattataataaatatgtattttagagtcactttacacagtgaaattaaaaacg |
24977183 |
T |
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| Q |
118 |
ccatctcttcggaccatatacaagtcaatgtatatgccccacattttagcttgtagggcatcacacattccaaattttcaaatgtatccttcaatccatc |
217 |
Q |
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|||||||||| ||||||||||| | ||||||||||||||||||||| ||||||||||||||| |||| |||||| |||||| |||||||||||||||||| |
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| T |
24977182 |
ccatctcttcagaccatatacatgccaatgtatatgccccacatttcagcttgtagggcatcgcacactccaaaatttcaagtgtatccttcaatccatc |
24977083 |
T |
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| Q |
218 |
taccctttg |
226 |
Q |
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||||||||| |
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| T |
24977082 |
taccctttg |
24977074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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