View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17192_low_1 (Length: 423)
Name: NF17192_low_1
Description: NF17192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17192_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 17 - 418
Target Start/End: Original strand, 3708018 - 3708419
Alignment:
| Q |
17 |
aatcacaaaggcagtgtggttttgttgaagttccataatgattcattgtgattttgtcaaacttaccgtgaatcaaaacataacttgagtagtaatggtg |
116 |
Q |
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| T |
3708018 |
aatcacaaaggcagggtggttttgttgaagttccataatgatttatcgtaattttgtcaaacttaccgtgaattaaaacataacttgagtagtaatggtc |
3708117 |
T |
|
| Q |
117 |
ataatggtataatatatgggggtattacacatttcgccaatgcagtattgcatgtgcctttatatttgatggtttacttcatcc--tagctacaatacaa |
214 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
3708118 |
ataatggtataatatatcggggtattacacatttcgccaatgcagtattgcatgtgcctttatatttgatggtttacttcatcctatagctacaatacaa |
3708217 |
T |
|
| Q |
215 |
actttgacgaaaggctaaaactactaaagtacctttaagtgagcttgtttgtgaagtaattaaacatatattgtattattatgaagtattttcagtagag |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
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| T |
3708218 |
actttgacgaaaggctaaaactactaaagtacctttaagtgagcttgtttgtgaagtaattaaacatatattgtattattat--agtatttttagtagag |
3708315 |
T |
|
| Q |
315 |
tgagtcatggcttttcattgtgaataggtgctttccgatgaggttgtgcataatcctcaactatgtcctcagcattctcattggtgtttataacctttgc |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
3708316 |
tgagtcatggcttttcattgtgaataggtgctttccgatgaggttgtgcataatcctcaactatgtcctcagcattctcattggtgtttataaccattgt |
3708415 |
T |
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| Q |
415 |
ttct |
418 |
Q |
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|||| |
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| T |
3708416 |
ttct |
3708419 |
T |
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