View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17192_low_2 (Length: 390)

Name: NF17192_low_2
Description: NF17192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17192_low_2
NF17192_low_2
[»] chr3 (59 HSPs)
chr3 (18-389)||(6528348-6528716)
chr3 (18-373)||(6522833-6523185)
chr3 (18-363)||(6734004-6734355)
chr3 (18-363)||(6781308-6781659)
chr3 (18-273)||(6841021-6841276)
chr3 (152-390)||(6555913-6556148)
chr3 (19-373)||(6556065-6556416)
chr3 (120-390)||(6521601-6521868)
chr3 (120-274)||(6840750-6840904)
chr3 (18-180)||(6942266-6942428)
chr3 (18-259)||(7586201-7586442)
chr3 (22-259)||(8452969-8453206)
chr3 (120-373)||(6522293-6522543)
chr3 (120-373)||(6521888-6522138)
chr3 (120-373)||(6522563-6522813)
chr3 (120-273)||(6840886-6841039)
chr3 (120-373)||(6522023-6522273)
chr3 (146-272)||(6840479-6840605)
chr3 (152-272)||(6522526-6522646)
chr3 (30-374)||(6796096-6796440)
chr3 (18-235)||(6945598-6945818)
chr3 (152-272)||(6521851-6521971)
chr3 (152-272)||(6522256-6522376)
chr3 (152-272)||(6522796-6522916)
chr3 (44-259)||(8570413-8570628)
chr3 (18-203)||(6730240-6730425)
chr3 (120-373)||(6840516-6840769)
chr3 (18-203)||(6450312-6450497)
chr3 (18-261)||(6481442-6481685)
chr3 (26-259)||(8469898-8470131)
chr3 (87-194)||(6931994-6932101)
chr3 (93-257)||(6592810-6592974)
chr3 (120-259)||(6840354-6840496)
chr3 (152-259)||(6796073-6796180)
chr3 (152-259)||(8588276-8588383)
chr3 (44-253)||(6236084-6236293)
chr3 (44-257)||(6723536-6723749)
chr3 (208-390)||(6734338-6734517)
chr3 (208-390)||(6781146-6781325)
chr3 (44-203)||(6898447-6898606)
chr3 (257-374)||(8453069-8453183)
chr3 (44-257)||(6140645-6140858)
chr3 (44-257)||(6880875-6881088)
chr3 (44-203)||(7748361-7748520)
chr3 (44-257)||(6167256-6167469)
chr3 (44-180)||(5297104-5297240)
chr3 (131-235)||(6734396-6734500)
chr3 (131-235)||(6781163-6781267)
chr3 (133-257)||(6915549-6915673)
chr3 (286-376)||(6945728-6945821)
chr3 (287-374)||(8588273-8588360)
chr3 (110-257)||(13272010-13272157)
chr3 (289-373)||(6841059-6841143)
chr3 (286-373)||(6450280-6450367)
chr3 (120-235)||(6555930-6556045)
chr3 (286-373)||(6730208-6730295)
chr3 (290-373)||(6840924-6841007)
chr3 (44-201)||(6257561-6257718)
chr3 (106-203)||(6850789-6850886)
[»] scaffold0425 (2 HSPs)
scaffold0425 (18-363)||(9123-9465)
scaffold0425 (120-390)||(8961-9228)
[»] scaffold1643 (1 HSPs)
scaffold1643 (18-259)||(500-744)
[»] scaffold0958 (1 HSPs)
scaffold0958 (47-235)||(1275-1462)
[»] chr7 (1 HSPs)
chr7 (153-235)||(6574808-6574890)


Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 59)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 389
Target Start/End: Complemental strand, 6528716 - 6528348
Alignment:
Q  18 aaaggaataaccttttcaggctcgtcggcaattcatttaccaaaattctatcacatctatatatatctaactctatgatattatcacacttgggaattga 117  Q
    ||||||||||||||||||  |||||||| ||||||||||||||||||||||||||| | | ||||||||||||||| ||||||||||||||||||||||     
T  6528716 aaaggaataaccttttcaaactcgtcggaaattcatttaccaaaattctatcacatgtctgtatatctaactctatcatattatcacacttgggaattgt 6528617  T
Q  118 tgcctccatcttgttgcaatcactaatctgcagattttgtaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatcggatatagaaatc 217  Q
    ||||||||||||| |||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||   | ||||||||||    
T  6528616 tgcctccatcttgctgcaatcaataatctccagtttttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaacttgttatagaaatc 6528517  T
Q  218 tctttaagcaaaggaaactctccaaggcataaccattcctccaacatgttgcaatcattgataatacacaatttttgtaaagatggaagatgttgaggca 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||   | || ||||||||||||||||| ||||| ||||||||||    
T  6528516 tctttaagcaaaggaaactctccaaggcataaccattcctccaacttgttgcaattat---ttatgcacaatttttgtaaagaaggaagctgttgaggca 6528420  T
Q  318 atactcttttcaatttggaacaatcacttatataaagctctttaagcagaggaaaccttacacatatccatt 389  Q
    |    ||||||||||| | |||||  |||||| ||||||||||||||| ||||||||||| |||||||||||    
T  6528419 aggtgcttttcaatttaggacaatttcttatagaaagctctttaagcaaaggaaaccttagacatatccatt 6528348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 373
Target Start/End: Complemental strand, 6523185 - 6522833
Alignment:
Q  18 aaaggaataaccttttcaggctcgtcggcaattcatttaccaaaattctatcacatctatatatatctaactctatgatattatcacacttgggaattga 117  Q
    |||||| |||| |||||||||| |||||||||||||||||||||||||||||||| || | ||||||||||||||| |||||||||||||||||||||||    
T  6523185 aaaggagtaactttttcaggctagtcggcaattcatttaccaaaattctatcacaactctgtatatctaactctatcatattatcacacttgggaattga 6523086  T
Q  118 tgcctccatcttgttgcaatcactaatctgcagattttgtaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatcggatatagaaatc 217  Q
    |||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||    ||||||||||    
T  6523085 tgcctccatcttgttgcaattactaatcttcagtttttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaatttcttatagaaatc 6522986  T
Q  218 tctttaagcaaaggaaactctccaaggcataaccattcctccaacatgttgcaatcattgataataca--caatttttgtaaagatggaagatgttgagg 315  Q
    ||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||     ||||||  || |||||||||||| ||||| ||||||||    
T  6522985 tctttaagcaaaggaaactctccaaggcataacaattcctccaactcgttgcaatca-----aatacatccagtttttgtaaagaaggaaggtgttgagg 6522891  T
Q  316 caatactcttttcaatttggaacaatcacttatataaagctctttaagcagaggaaac 373  Q
    ||   | |||||||||| || |||||  |||||| ||| ||||||||||| |||||||    
T  6522890 cagagcccttttcaattcgggacaatttcttatagaaatctctttaagcaaaggaaac 6522833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 363
Target Start/End: Original strand, 6734004 - 6734355
Alignment:
Q  18 aaaggaataaccttttcaggctcgtcggcaattcatttaccaaaattctatcacatctatatatatctaactctatgatattatcacacttgggaattga 117  Q
    |||||| |||| ||||||  || || ||||||||||||||||||||||||||||||||   ||||||||||||||| |||||||||||||| ||||||||    
T  6734004 aaaggactaactttttcaaactggtaggcaattcatttaccaaaattctatcacatctccgtatatctaactctatcatattatcacacttaggaattga 6734103  T
Q  118 tgcctccatcttgttgcaatcactaatctgcagattttgtaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatcggatatagaaatc 217  Q
    ||| |||| |||||||||||| ||||||| ||| || |||||||||||||||||||| |||||||||||||||||||  | ||| | | ||||||||||     
T  6734104 tgcttccaacttgttgcaatctctaatctccagtttctgtaaagaaggaaggtgttgtggcagagcccttttcaattcagaacatttgaatatagaaata 6734203  T
Q  218 tctttaagcaaaggaaactctccaaggcataaccattcctccaacatgttgcaatcattgataatacacaatttttgtaaagatggaagat--------- 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    | |||||||||||||||||||||||             
T  6734204 tctttaagcaaaggaaactctccaaggcataaccattcctccaacatgttgcaatcattgatc---cgcaatttttgtaaagatggaagatgtggaagaa 6734300  T
Q  309 gttgaggcaatactcttttcaatttggaacaatcacttatataaagctctttaag 363  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||    
T  6734301 gttgaggcaatactcttttgaatttggaacaatgacttatataaagctctttaag 6734355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 363
Target Start/End: Complemental strand, 6781659 - 6781308
Alignment:
Q  18 aaaggaataaccttttcaggctcgtcggcaattcatttaccaaaattctatcacatctatatatatctaactctatgatattatcacacttgggaattga 117  Q
    |||||| |||| ||||||  || || ||||||||||||||||||||||||||||||||   ||||||||||||||| |||||||||||||| ||||||||    
T  6781659 aaaggactaactttttcaaactggtaggcaattcatttaccaaaattctatcacatctccgtatatctaactctatcatattatcacacttaggaattga 6781560  T
Q  118 tgcctccatcttgttgcaatcactaatctgcagattttgtaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatcggatatagaaatc 217  Q
    ||| |||| |||||||||||| ||||||| ||| || |||||||||||||||||||| |||||||||||||||||||  | ||| | | ||||||||||     
T  6781559 tgcttccaacttgttgcaatctctaatctccagtttctgtaaagaaggaaggtgttgtggcagagcccttttcaattcagaacatttgaatatagaaata 6781460  T
Q  218 tctttaagcaaaggaaactctccaaggcataaccattcctccaacatgttgcaatcattgataatacacaatttttgtaaagatggaagat--------- 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    | |||||||||||||||||||||||             
T  6781459 tctttaagcaaaggaaactctccaaggcataaccattcctccaacatgttgcaatcattgatc---cgcaatttttgtaaagatggaagatgtggaagaa 6781363  T
Q  309 gttgaggcaatactcttttcaatttggaacaatcacttatataaagctctttaag 363  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||    
T  6781362 gttgaggcaatactcttttgaatttggaacaatgacttatataaagctctttaag 6781308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 273
Target Start/End: Complemental strand, 6841276 - 6841021
Alignment:
Q  18 aaaggaataaccttttcaggctcgtcggcaattcatttaccaaaattctatcacatctatatatatctaactctatgatattatcacacttgggaattga 117  Q
    |||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||| ||||||||||||    
T  6841276 aaaggagtaaccttttcaagctggtcggcaattcatttaccaaaattctatcacatctctgtatatctaactctatcatattatcactcttgggaattga 6841177  T
Q  118 tgcctccatcttgttgcaatcactaatctgcagattttgtaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatcggatatagaaatc 217  Q
    ||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||    ||||||||||    
T  6841176 tgcctccatcttgttgcaatcccaaatctgcagtttttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaatttcttatagaaatc 6841077  T
Q  218 tctttaagcaaaggaaactctccaaggcataaccattcctccaacatgttgcaatc 273  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  6841076 tctttaagcaaaggaaactctccaaggcataacaattcctccaacttgttgcaatc 6841021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 152 - 390
Target Start/End: Complemental strand, 6556148 - 6555913
Alignment:
Q  152 ttttgtaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatcggatatagaaatctctttaagcaaaggaaactctccaaggcataacc 251  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||||||    |||  ||| ||||||||||||||||||||||||||||||||| |    
T  6556148 ttttgtaaagaaggaaggtgttgaggaagagcccttttcaattcgggacaatttcttattaaaaactctttaagcaaaggaaactctccaaggcataaac 6556049  T
Q  252 attcctccaacatgttgcaatcattgataatacacaatttttgtaaagatggaagatgttgaggcaatactcttttcaatttggaacaatcacttatata 351  Q
    ||||||||||||||||||||||||||   || ||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||    ||||||    
T  6556048 attcctccaacatgttgcaatcattg---atccacaaattttgtaaagatggaagatgttgaggcaatactcttttcaatttaggacaattttctatata 6555952  T
Q  352 aagctctttaagcagaggaaaccttacacatatccattc 390  Q
    |||||||||||||||||||||||||||||||||||||||    
T  6555951 aagctctttaagcagaggaaaccttacacatatccattc 6555913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 19 - 373
Target Start/End: Complemental strand, 6556416 - 6556065
Alignment:
Q  19 aaggaataaccttttcaggctcgtcggcaattcatttaccaaaattctatcacatctatatatatctaactctatgatattatcacacttgggaattgat 118  Q
    ||||| |||| |||||||||| ||||||||||||||||||||||||||||||||  | | ||||||||||||||| |||||||||| |||||||||||||    
T  6556416 aaggagtaactttttcaggctagtcggcaattcatttaccaaaattctatcacaattctgtatatctaactctatcatattatcactcttgggaattgat 6556317  T
Q  119 gcctccatcttgttgcaatcactaatctgcagattttgtaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatcggatatagaaatct 218  Q
    ||||||| || ||||||||||   |    ||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||    |||||||| |     
T  6556316 gcctccaactcgttgcaatcaaatacacccagtttttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgagacaatttcttatagaaaaca 6556217  T
Q  219 ctttaagcaaaggaaactctccaaggcataaccattcctccaacatgttgcaatcattgataataca--caatttttgtaaagatggaagatgttgaggc 316  Q
    |||||||||||||||||||||||||||||||| |||||||||||  ||||||||||     ||||||  || |||||||||||| ||||| ||||||||     
T  6556216 ctttaagcaaaggaaactctccaaggcataacaattcctccaactcgttgcaatca-----aatacacccagtttttgtaaagaaggaaggtgttgagga 6556122  T
Q  317 aatactcttttcaatttggaacaatcacttatataaagctctttaagcagaggaaac 373  Q
    |   | |||||||||| || |||||  |||||  ||| ||||||||||| |||||||    
T  6556121 agagcccttttcaattcgggacaatttcttattaaaaactctttaagcaaaggaaac 6556065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 120 - 390
Target Start/End: Complemental strand, 6521868 - 6521601
Alignment:
Q  120 cctccatcttgttgcaatcactaatctgcagattttgtaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatcggatatagaaatctc 219  Q
    |||||| |||||||||||  | ||||| ||| |||||||||||||||||||||||| |||||||||||||||||| |||||||  |||||||||||||||    
T  6521868 cctccaacttgttgcaattccgaatctccagtttttgtaaagaaggaaggtgttgatgcagagcccttttcaattcgggacaaaaggatatagaaatctc 6521769  T
Q  220 tttaagcaaaggaaactctccaaggcataaccattcctccaacatgttgcaatcattgataatacacaatttttgtaaagatggaagatgttgaggcaat 319  Q
    ||||||||||||||||||||||||||||||| |||||||||||  |||||||||| ||||  |   ||||||||||||||| | ||| ||||||||||      
T  6521768 tttaagcaaaggaaactctccaaggcataacaattcctccaactcgttgcaatcactgatctt---caatttttgtaaagaagaaaggtgttgaggcagg 6521672  T
Q  320 actcttttcaatttggaacaatcacttatataaagctctttaagcagaggaaaccttacacatatccattc 390  Q
       ||||||||||| | |||||   ||||||||||||||||||||||||||||||||||||||||||||||    
T  6521671 gtgcttttcaatttaggacaattttttatataaagctctttaagcagaggaaaccttacacatatccattc 6521601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 120 - 274
Target Start/End: Complemental strand, 6840904 - 6840750
Alignment:
Q  120 cctccatcttgttgcaatcactaatctgcagattttgtaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatcggatatagaaatctc 219  Q
    |||||| |||||||||||| | |||||  |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  6840904 cctccaacttgttgcaatcccaaatctctagattttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaatcggatatagaaatctc 6840805  T
Q  220 tttaagcaaaggaaactctccaaggcataaccattcctccaacatgttgcaatca 274  Q
    ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  6840804 tttaagcaaaggaaactctccaaggcataacaattcctccaacttgttgcaatca 6840750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 18 - 180
Target Start/End: Original strand, 6942266 - 6942428
Alignment:
Q  18 aaaggaataaccttttcaggctcgtcggcaattcatttaccaaaattctatcacatctatatatatctaactctatgatattatcacacttgggaattga 117  Q
    |||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||    
T  6942266 aaaggaataaacttttcaagctggtcggcaattcatttaccaaaattctatcacatctctgtatatctaactctatcatattatcacacttgggaattga 6942365  T
Q  118 tgcctccatcttgttgcaatcactaatctgcagattttgtaaagaaggaaggtgttgaggcag 180  Q
    |||||||||||||||||||| || ||||| ||| |||||||||||||||||||||||||||||    
T  6942366 tgcctccatcttgttgcaataaccaatcttcagtttttgtaaagaaggaaggtgttgaggcag 6942428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 18 - 259
Target Start/End: Original strand, 7586201 - 7586442
Alignment:
Q  18 aaaggaataaccttttcaggctcgtcggcaattcatttaccaaaattctatcacatctatatatatctaactctatgatattatcacacttgggaattga 117  Q
    |||||||||| |||||||   | ||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||| |||||| |    
T  7586201 aaaggaataaacttttcaaatttgtcggcaattcatttaccaaaattctatcacatctctttatatctaactctatcatattatcacacttcggaattaa 7586300  T
Q  118 tgcctccatcttgttgcaatcactaatctgcagattttgtaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatcggatatagaaatc 217  Q
    ||| |||| ||| ||||||||  |||||| ||| || |||||||||||||||||||||||||||||||||||||| |||||||| |    |||||||| |    
T  7586301 tgcttccaacttcttgcaatctttaatctccagtttctgtaaagaaggaaggtgttgaggcagagcccttttcaacttgggacatttttttatagaaagc 7586400  T
Q  218 tctttaagcaaaggaaactctccaaggcataaccattcctcc 259  Q
    |||||||||||||||||| || ||||   | |||||||||||    
T  7586401 tctttaagcaaaggaaacccttcaagatgtgaccattcctcc 7586442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 22 - 259
Target Start/End: Original strand, 8452969 - 8453206
Alignment:
Q  22 gaataaccttttcaggctcgtcggcaattcatttaccaaaattctatcacatctatatatatctaactctatgatattatcacacttgggaattgatgcc 121  Q
    ||||||| |||||| ||| ||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||  ||||||||||||||     
T  8452969 gaataactttttcaagctggtcggcaattcatttaccaaaattctatcacatctctttatatctaaatctatgatattatcaccgttgggaattgatgct 8453068  T
Q  122 tccatcttgttgcaatcactaatctgcagattttgtaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatcggatatagaaatctctt 221  Q
    |||| | | ||||||||| ||||   ||  ||||||||||||||||||||||||||||| | | |||||||||||||||| ||   |||| ||| |||||    
T  8453069 tccaacatcttgcaatcattaatgaacaatttttgtaaagaaggaaggtgttgaggcagggacattttcaatttgggacattctcttatataaagctctt 8453168  T
Q  222 taagcaaaggaaactctccaaggcataaccattcctcc 259  Q
    |||||||||||||| || |||| || ||||||||||||    
T  8453169 taagcaaaggaaacccttcaagacacaaccattcctcc 8453206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 120 - 373
Target Start/End: Complemental strand, 6522543 - 6522293
Alignment:
Q  120 cctccatcttgttgcaatcactaatctgcagattttgtaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatcggatatagaaatctc 219  Q
    |||||| |||||||||||  | ||||| ||| |||||||||||||||||||||||| |||||||||||||||||| |||||||  |||||||||||||||    
T  6522543 cctccaacttgttgcaattccgaatctccagtttttgtaaagaaggaaggtgttgatgcagagcccttttcaattcgggacaaaaggatatagaaatctc 6522444  T
Q  220 tttaagcaaaggaaactctccaaggcataaccattcctccaacatgttgcaatcattgataataca--caatttttgtaaagatggaagatgttgaggca 317  Q
    ||||||||||||||||||||||||||||||| |||||| ||||  ||||||||||     ||||||  || |||||||||||| ||||| ||||||||||    
T  6522443 tttaagcaaaggaaactctccaaggcataacaattcctgcaactcgttgcaatca-----aatacatccagtttttgtaaagaaggaaggtgttgaggca 6522349  T
Q  318 atactcttttcaatttggaacaatcacttatataaagctctttaagcagaggaaac 373  Q
       | |||||||||| || |||||  |||||| ||| ||||||||||| |||||||    
T  6522348 gagcccttttcaattcgggacaatttcttatagaaatctctttaagcaaaggaaac 6522293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 120 - 373
Target Start/End: Complemental strand, 6522138 - 6521888
Alignment:
Q  120 cctccatcttgttgcaatcactaatctgcagattttgtaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatcggatatagaaatctc 219  Q
    |||||| |||||||||||  | ||||| ||| |||||||||||||||||||||||| |||||||||||||||||| ||||||||    ||||||||||||    
T  6522138 cctccaacttgttgcaattccgaatctccagtttttgtaaagaaggaaggtgttgatgcagagcccttttcaattcgggacaatttcttatagaaatctc 6522039  T
Q  220 tttaagcaaaggaaactctccaaggcataaccattcctccaacatgttgcaatcattgataataca--caatttttgtaaagatggaagatgttgaggca 317  Q
    ||||||||||||||||||||||||||||||| |||||||||||  ||||||||||     ||||||  || |||||||||||| ||||| ||||||||||    
T  6522038 tttaagcaaaggaaactctccaaggcataacaattcctccaactcgttgcaatca-----aatacatccagtttttgtaaagaaggaaggtgttgaggca 6521944  T
Q  318 atactcttttcaatttggaacaatcacttatataaagctctttaagcagaggaaac 373  Q
       | |||||||||| || |||||  |||||| ||| ||||||||||| |||||||    
T  6521943 gagcccttttcaattcgggacaatttcttatagaaatctctttaagcaaaggaaac 6521888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 120 - 373
Target Start/End: Complemental strand, 6522813 - 6522563
Alignment:
Q  120 cctccatcttgttgcaatcactaatctgcagattttgtaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatcggatatagaaatctc 219  Q
    |||||| |||||||||||  | ||||| ||| |||||||||||||||||||||||| |||||||||||||||||| |||||||  |||||||||||||||    
T  6522813 cctccaacttgttgcaattccgaatctccagtttttgtaaagaaggaaggtgttgatgcagagcccttttcaattcgggacaaaaggatatagaaatctc 6522714  T
Q  220 tttaagcaaaggaaactctccaaggcataaccattcctccaacatgttgcaatcattgataataca--caatttttgtaaagatggaagatgttgaggca 317  Q
    ||||||||||||||||||||||||||||||| |||||| ||||  ||||||||||     ||||||  || |||||||||||| ||||| ||||||||||    
T  6522713 tttaagcaaaggaaactctccaaggcataacaattcctgcaactcgttgcaatca-----aatacatccagtttttgtaaagaaggaaggtgttgaggca 6522619  T
Q  318 atactcttttcaatttggaacaatcacttatataaagctctttaagcagaggaaac 373  Q
       | |||||||||| || |||||   ||||| ||| ||||||||||| |||||||    
T  6522618 gagcccttttcaattcgggacaatttgttatagaaatctctttaagcaaaggaaac 6522563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 120 - 273
Target Start/End: Complemental strand, 6841039 - 6840886
Alignment:
Q  120 cctccatcttgttgcaatcactaatctgcagattttgtaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatcggatatagaaatctc 219  Q
    |||||| |||||||||||| | |||||  |||||||||||||||||||||||||||||||||||||||||||||| ||||||||    ||||||||||||    
T  6841039 cctccaacttgttgcaatcccaaatctctagattttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaatttcttatagaaatctc 6840940  T
Q  220 tttaagcaaaggaaactctccaaggcataaccattcctccaacatgttgcaatc 273  Q
    ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  6840939 tttaagcaaaggaaactctccaaggcataacaattcctccaacttgttgcaatc 6840886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 120 - 373
Target Start/End: Complemental strand, 6522273 - 6522023
Alignment:
Q  120 cctccatcttgttgcaatcactaatctgcagattttgtaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatcggatatagaaatctc 219  Q
    |||||| |||||||||||  | ||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||    ||||||||||||    
T  6522273 cctccaacttgttgcaattccgaatctccagattttgtaaagaaggaaggtgttgatgcagagcccttttcaattcgggacaatttcttatagaaatctc 6522174  T
Q  220 tttaagcaaaggaaactctccaaggcataaccattcctccaacatgttgcaatcattgataatacacaatttttgtaaagatggaagatgttgaggcaat 319  Q
    ||||||||||||||||||||||||||||||| ||||||||||| |||||||   |||   |||   || |||||||||||| ||||| |||||| |||      
T  6522173 tttaagcaaaggaaactctccaaggcataacaattcctccaacttgttgca---attccgaatctccagtttttgtaaagaaggaaggtgttgatgcaga 6522077  T
Q  320 actcttttcaatttggaacaatcacttatataaagctctttaagcagaggaaac 373  Q
     | |||||||||| || |||||  |||||| ||| ||||||||||| |||||||    
T  6522076 gcccttttcaattcgggacaatttcttatagaaatctctttaagcaaaggaaac 6522023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 146 - 272
Target Start/End: Complemental strand, 6840605 - 6840479
Alignment:
Q  146 tgcagattttgtaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatcggatatagaaatctctttaagcaaaggaaactctccaaggc 245  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||    
T  6840605 tgcagtttttgtaaagaaggaaggtgttgtggcagagcccttttcaatttgggacaatcgaatatataaatctctttaagcaaaggaaactctccaaggc 6840506  T
Q  246 ataaccattcctccaacatgttgcaat 272  Q
    ||||| ||||||||||| |||||||||    
T  6840505 ataacaattcctccaacttgttgcaat 6840479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 152 - 272
Target Start/End: Complemental strand, 6522646 - 6522526
Alignment:
Q  152 ttttgtaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatcggatatagaaatctctttaagcaaaggaaactctccaaggcataacc 251  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||  | |||||||||||||||||||||||||||||||||||||||||||     
T  6522646 ttttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaatttgttatagaaatctctttaagcaaaggaaactctccaaggcataaca 6522547  T
Q  252 attcctccaacatgttgcaat 272  Q
    ||||||||||| |||||||||    
T  6522546 attcctccaacttgttgcaat 6522526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 30 - 374
Target Start/End: Complemental strand, 6796440 - 6796096
Alignment:
Q  30 ttttcaggctcgtcggcaattcatttaccaaaattctatcacatctatatatatctaactctatgatattatcacacttgggaattgatgcctccatctt 129  Q
    |||||| ||| || ||||||||||||||||||||| || |||| || | ||||| ||||| || |||| |||||| ||| ||||||||||| |||| ||     
T  6796440 ttttcaagcttgttggcaattcatttaccaaaattttaccacaactctgtatatataactgtacgatactatcaccctttggaattgatgcttccaactc 6796341  T
Q  130 gttgcaatcactaatctgcagattttgtaaagaaggaaggtgttgaggcag--ag-cccttttcaatttgggacaatcggatatagaaatctctttaagc 226  Q
    || |||||||| ||||| ||  || ||||||||||||||||||||||| ||  || ||||||| || |||  |||| |   || ||||||||||||||||    
T  6796340 gtagcaatcaccaatcttcattttctgtaaagaaggaaggtgttgaggaagcaagaccctttttaagttgtaacaaacatttacagaaatctctttaagc 6796241  T
Q  227 aaaggaaactctccaaggcataaccattcctccaacatgttgcaatcattgataatacacaatttttgtaaagatggaagatgttgaggcaatactcttt 326  Q
    ||||||||||||||| |||||||||||||||| |||||  |||||| ||||   || ||||||||||||||||| ||||| | |||||||    | ||||    
T  6796240 aaaggaaactctccagggcataaccattcctcaaacatcatgcaattattg---atccacaatttttgtaaagaaggaaggttttgaggctgagcccttt 6796144  T
Q  327 tcaatttggaacaatcacttatataaagctctttaagcagaggaaacc 374  Q
    |||||| |  ||||    ||||||||||||||||||||| ||||||||    
T  6796143 tcaattcgtgacaacttgttatataaagctctttaagcaaaggaaacc 6796096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 18 - 235
Target Start/End: Original strand, 6945598 - 6945818
Alignment:
Q  18 aaaggaataaccttttcaggctcgtcggcaattcatttaccaaaattctatcacatctatatatatctaactctatgatattatcacacttgggaattga 117  Q
    |||| |||||||||||||   | ||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||| |||||||| |||    
T  6945598 aaagtaataaccttttcaaatttgtcggcaattcatttaccaaaattctatcacatctctgtatatctaactctatcatattatcactcttgggaactga 6945697  T
Q  118 tgcctccatcttgttgcaatcactaatctgcagattttgtaaagaaggaaggtgttgaggcag---agcccttttcaatttgggacaatcggatatagaa 214  Q
    | |||||| ||  || ||| ||| ||  ||||  |||||||||||||||||||||||||||||    ||||||||||||||||||||||    ||||| |    
T  6945698 tacctccaactgtttacaaacacaaagttgcaatttttgtaaagaaggaaggtgttgaggcagcaaggcccttttcaatttgggacaatttcttatagta 6945797  T
Q  215 atctctttaagcaaaggaaac 235  Q
    | |||||||||||||||||||    
T  6945798 agctctttaagcaaaggaaac 6945818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 152 - 272
Target Start/End: Complemental strand, 6521971 - 6521851
Alignment:
Q  152 ttttgtaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatcggatatagaaatctctttaagcaaaggaaactctccaaggcataacc 251  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||    |||||||||||||||||||||||||||||||||||||||||||     
T  6521971 ttttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaatttcttatagaaatctctttaagcaaaggaaactctccaaggcataaca 6521872  T
Q  252 attcctccaacatgttgcaat 272  Q
    ||||||||||| |||||||||    
T  6521871 attcctccaacttgttgcaat 6521851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 152 - 272
Target Start/End: Complemental strand, 6522376 - 6522256
Alignment:
Q  152 ttttgtaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatcggatatagaaatctctttaagcaaaggaaactctccaaggcataacc 251  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||    |||||||||||||||||||||||||||||||||||||||||||     
T  6522376 ttttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaatttcttatagaaatctctttaagcaaaggaaactctccaaggcataaca 6522277  T
Q  252 attcctccaacatgttgcaat 272  Q
    ||||||||||| |||||||||    
T  6522276 attcctccaacttgttgcaat 6522256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 152 - 272
Target Start/End: Complemental strand, 6522916 - 6522796
Alignment:
Q  152 ttttgtaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatcggatatagaaatctctttaagcaaaggaaactctccaaggcataacc 251  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||    |||||||||||||||||||||||||||||||||||||||||||     
T  6522916 ttttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaatttcttatagaaatctctttaagcaaaggaaactctccaaggcataaca 6522817  T
Q  252 attcctccaacatgttgcaat 272  Q
    ||||||||||| |||||||||    
T  6522816 attcctccaacttgttgcaat 6522796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 44 - 259
Target Start/End: Complemental strand, 8570628 - 8570413
Alignment:
Q  44 ggcaattcatttaccaaaattctatcacatctatatatatctaactctatgatattatcacacttgggaattgatgcctccatcttgttgcaatcactaa 143  Q
    |||||||||||||||||||| |||||||||  || || || |||||||  ||||||||||  |||||||||||| ||||||| ||| ||||||||||| |    
T  8570628 ggcaattcatttaccaaaatgctatcacattcatctagatataactcttcgatattatcagccttgggaattgaagcctccaacttcttgcaatcactga 8570529  T
Q  144 tctgcagattttgtaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatcggatatagaaatctctttaagcaaaggaaactctccaag 243  Q
    ||| ||| ||||||||||||||||||||| ||||||| |||||||||||| || ||||||    |||||||| || |||||||||||||||| || |||     
T  8570528 tctccagtttttgtaaagaaggaaggtgtcgaggcagggcccttttcaatctgtgacaatatcttatagaaagctttttaagcaaaggaaacccttcaat 8570429  T
Q  244 gcataaccattcctcc 259  Q
     || ||||||||||||    
T  8570428 acaaaaccattcctcc 8570413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 18 - 203
Target Start/End: Complemental strand, 6730425 - 6730240
Alignment:
Q  18 aaaggaataaccttttcaggctcgtcggcaattcatttaccaaaattctatcacatctatatatatctaactctatgatattatcacacttgggaattga 117  Q
    |||||| |||| |||||| ||| ||||||||||||||||||||||| || |||||||    || || ||| |||||||||||||||| ||||||||||||    
T  6730425 aaaggactaactttttcaagctagtcggcaattcatttaccaaaatgctttcacatcccactagatgtaaatctatgatattatcacccttgggaattga 6730326  T
Q  118 tgcctccatcttgttgcaatcactaatctgcagattttgtaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaat 203  Q
    |||||||| ||  ||||||  |  ||||| ||  |||| |||||||||||||||||||||||| |||||||||| |||||||||||    
T  6730325 tgcctccaactctttgcaacaaacaatcttcaatttttctaaagaaggaaggtgttgaggcagggcccttttcagtttgggacaat 6730240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 120 - 373
Target Start/End: Complemental strand, 6840769 - 6840516
Alignment:
Q  120 cctccatcttgttgcaatcactaatctgcagattttgtaaagaaggaaggtgttgag---gcagagcccttttcaatttgggacaatcggatatagaaat 216  Q
    |||||| |||||||||||||| ||||| ||| |||||||||||||||||||||||||   |||  |||||||| |||||||| ||||    |||||||||    
T  6840769 cctccaacttgttgcaatcacaaatcttcagtttttgtaaagaaggaaggtgttgaggtagcaaggccctttttaatttggggcaatttcttatagaaat 6840670  T
Q  217 ctctttaagcaaaggaaactctccaaggcataaccattcctccaacatgttgcaatcattgataataca--caatttttgtaaagatggaagatgttgag 314  Q
    ||||||||||||||||| | || |||| || ||||||| |||||||  ||||||||||     ||||||  || |||||||||||| ||||| ||||| |    
T  6840669 ctctttaagcaaaggaatcccttcaagacaaaaccatttctccaactcgttgcaatca-----aatacatgcagtttttgtaaagaaggaaggtgttgtg 6840575  T
Q  315 gcaatactcttttcaatttggaacaatcacttatataaagctctttaagcagaggaaac 373  Q
    |||   | ||||||||||||| ||||||   |||||||| ||||||||||| |||||||    
T  6840574 gcagagcccttttcaatttgggacaatcgaatatataaatctctttaagcaaaggaaac 6840516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 18 - 203
Target Start/End: Complemental strand, 6450497 - 6450312
Alignment:
Q  18 aaaggaataaccttttcaggctcgtcggcaattcatttaccaaaattctatcacatctatatatatctaactctatgatattatcacacttgggaattga 117  Q
    |||||| |||| |||||| ||| ||||||||||||||||||||||| || ||| |||    || || ||| |||||||||||||||| ||||||||||||    
T  6450497 aaaggactaactttttcaagctagtcggcaattcatttaccaaaatgctttcatatcccactagatgtaaatctatgatattatcacccttgggaattga 6450398  T
Q  118 tgcctccatcttgttgcaatcactaatctgcagattttgtaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaat 203  Q
    |||||||| ||  ||||||  |  ||||| ||  |||| |||||||||||||||||||||||| |||||||||| |||||||||||    
T  6450397 tgcctccaactcattgcaacaaacaatcttcaatttttctaaagaaggaaggtgttgaggcagggcccttttcagtttgggacaat 6450312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 18 - 261
Target Start/End: Complemental strand, 6481685 - 6481442
Alignment:
Q  18 aaaggaataaccttttcaggctcgtcggcaattcatttaccaaaattctatcacatctatatatatctaactctatgatattatcacacttgggaattga 117  Q
    |||||| |||| |||||| ||| ||||||||||| |||| |||||| || |||||||  |  | |  |||||||| ||||||||||| ||  || |||||    
T  6481685 aaaggactaactttttcaagctggtcggcaattcctttatcaaaatgctgtcacatcccttcagacataactctaagatattatcaccctcaggcattga 6481586  T
Q  118 tgcctccatcttgttgcaatcactaatctgcagattttgtaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatcggatatagaaatc 217  Q
     ||||||| ||||||||||| | |||||  ||  || ||||||||||||||||||||||| || |||||||||||||||||||||||   ||||| || |    
T  6481585 agcctccaacttgttgcaattaataatcgacaatttctgtaaagaaggaaggtgttgaggaagggcccttttcaatttgggacaatcttttatagtaagc 6481486  T
Q  218 tctttaagcaaaggaaactctccaaggcataaccattcctccaa 261  Q
    ||||||||| |  ||||| || || | |||||||||||||||||    
T  6481485 tctttaagcgacagaaacccttcatgacataaccattcctccaa 6481442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 26 - 259
Target Start/End: Original strand, 8469898 - 8470131
Alignment:
Q  26 aaccttttcaggctcgtcggcaattcatttaccaaaattctatcacatctatatatatctaactctatgatattatcacacttgggaattgatgcctcca 125  Q
    |||||||||| ||| || |||||||||||||  |||||   ||||||||| | || ||||||||||||||||||||||| ||||||||| |||||||| |    
T  8469898 aaccttttcaagctggttggcaattcatttattaaaatgtgatcacatctctgtagatctaactctatgatattatcacccttgggaatcgatgcctcta 8469997  T
Q  126 tcttgttgcaatcactaatctgcagattttgtaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatcggatatagaaatctctttaag 225  Q
     |   |  || ||| ||||||  |  ||||||||||||||||||||||||||||  || ||| |||||| ||||||      |||||||| |||||||||    
T  8469998 acagttcacagtcaataatctctaatttttgtaaagaaggaaggtgttgaggcaatgcgcttctcaattcgggacagctttttatagaaagctctttaag 8470097  T
Q  226 caaaggaaactctccaaggcataaccattcctcc 259  Q
    |||||||||| || |||| || ||||||||||||    
T  8470098 caaaggaaacccttcaagacacaaccattcctcc 8470131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 87 - 194
Target Start/End: Original strand, 6931994 - 6932101
Alignment:
Q  87 actctatgatattatcacacttgggaattgatgcctccatcttgttgcaatcactaatctgcagattttgtaaagaaggaaggtgttgaggcagagccct 186  Q
    |||||||| |||||| | |||| |||||||| ||||| | ||||| |||||||||||||| ||| |||||||||||||||||||||||||| ||||||||    
T  6931994 actctatggtattatgaaacttaggaattgaagcctcaaacttgtggcaatcactaatctccagtttttgtaaagaaggaaggtgttgaggaagagccct 6932093  T
Q  187 tttcaatt 194  Q
    ||||||||    
T  6932094 tttcaatt 6932101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 93 - 257
Target Start/End: Complemental strand, 6592974 - 6592810
Alignment:
Q  93 tgatattatcacacttgggaattgatgcctccatcttgttgcaatcactaatctgcagattttgtaaagaaggaaggtgttgaggcagagcccttttcaa 192  Q
    |||||||||||  |||||||||||| ||||||| ||  | ||||||| |||||| ||  ||||| ||||||||||||||||||||||| || ||||||||    
T  6592974 tgatattatcagccttgggaattgaagcctccaactcttggcaatcagtaatctccaatttttgcaaagaaggaaggtgttgaggcagggctcttttcaa 6592875  T
Q  193 tttgggacaatcggatatagaaatctctttaagcaaaggaaactctccaaggcataaccattcct 257  Q
     ||||||||||    |||| ||| ||||| ||||||||| ||  || |||| |||||||||||||    
T  6592874 cttgggacaatgttttatacaaagctcttgaagcaaagggaaaccttcaagacataaccattcct 6592810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 120 - 259
Target Start/End: Complemental strand, 6840496 - 6840354
Alignment:
Q  120 cctccatcttgttgcaatcactaatctgcagattttgtaaagaaggaaggtgttgaggcag---agcccttttcaatttgggacaatcggatatagaaat 216  Q
    |||||| ||||||||||| |||||||| ||| ||||||||||||| |||||||| ||||||    ||| |||||||||||||||| |    |||||||||    
T  6840496 cctccaacttgttgcaataactaatctccagcttttgtaaagaagtaaggtgtttaggcagcactgcctttttcaatttgggacattttcttatagaaat 6840397  T
Q  217 ctctttaagcaaaggaaactctccaaggcataaccattcctcc 259  Q
    || |||||||||||||||| || |||| || ||||||| ||||    
T  6840396 ctttttaagcaaaggaaacccttcaagacaaaaccatttctcc 6840354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 152 - 259
Target Start/End: Complemental strand, 6796180 - 6796073
Alignment:
Q  152 ttttgtaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatcggatatagaaatctctttaagcaaaggaaactctccaaggcataacc 251  Q
    ||||||||||||||||||| ||||||| ||||||||||||||| | |||||   | |||| ||| ||||||||||||||||||| || |||| || ||||    
T  6796180 ttttgtaaagaaggaaggttttgaggctgagcccttttcaattcgtgacaacttgttatataaagctctttaagcaaaggaaacccttcaagacaaaacc 6796081  T
Q  252 attcctcc 259  Q
    ||||||||    
T  6796080 attcctcc 6796073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 152 - 259
Target Start/End: Original strand, 8588276 - 8588383
Alignment:
Q  152 ttttgtaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatcggatatagaaatctctttaagcaaaggaaactctccaaggcataacc 251  Q
    |||||||||||||||||||||||||||| ||||||||||||||  ||||| ||   |||| | | || |||||||||||||||| ||  |||||||| ||    
T  8588276 ttttgtaaagaaggaaggtgttgaggcaaagcccttttcaattcaggacattcacttataaatagctttttaagcaaaggaaacccttgaaggcatatcc 8588375  T
Q  252 attcctcc 259  Q
    ||||||||    
T  8588376 attcctcc 8588383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 44 - 253
Target Start/End: Original strand, 6236084 - 6236293
Alignment:
Q  44 ggcaattcatttaccaaaattctatcacatctatatatatctaactctatgatattatcacacttgggaattgatgcctccatcttgttgcaatcactaa 143  Q
    ||||||||||||| |||||| | ||||||||| | ||  |||| |||  |||||||| ||  |||||||||||| ||||||| ||  | ||||||| |||    
T  6236084 ggcaattcatttatcaaaatgccatcacatctctttagttctagctcactgatattaccagccttgggaattgacgcctccaactcttggcaatcaataa 6236183  T
Q  144 tctgcagattttgtaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatcggatatagaaatctctttaagcaaaggaaactctccaag 243  Q
    ||| ||  ||||| ||| ||||||||| |||||||||  | |||||||| ||||||||||    |||| ||| ||||||||| ||||| ||  ||||| |    
T  6236184 tctccaatttttgcaaacaaggaaggtattgaggcaggtcacttttcaacttgggacaatgttttatacaaagctctttaagaaaagggaaacctccacg 6236283  T
Q  244 gcataaccat 253  Q
     |||||||||    
T  6236284 acataaccat 6236293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 44 - 257
Target Start/End: Complemental strand, 6723749 - 6723536
Alignment:
Q  44 ggcaattcatttaccaaaattctatcacatctatatatatctaactctatgatattatcacacttgggaattgatgcctccatcttgttgcaatcactaa 143  Q
    ||||||||||||| ||||||   ||||||||| | ||  |||| ||   |||||||||||  |||||||||||| ||||||| ||  | ||||||| |||    
T  6723749 ggcaattcatttatcaaaatatcatcacatctctttagttctagcttactgatattatcagccttgggaattgaagcctccagctcttggcaatcaataa 6723650  T
Q  144 tctgcagattttgtaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatcggatatagaaatctctttaagcaaaggaaactctccaag 243  Q
    ||| ||  ||||| || |||||||||||||||||||| |  |||||||| ||||||||||    |||| ||| |||||  |||||||| ||  || ||||    
T  6723649 tctccaatttttgcaatgaaggaaggtgttgaggcagggaacttttcaacttgggacaatgttttatacaaagctcttgtagcaaagggaaaccttcaag 6723550  T
Q  244 gcataaccattcct 257  Q
     |||||||||||||    
T  6723549 acataaccattcct 6723536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 208 - 390
Target Start/End: Original strand, 6734338 - 6734517
Alignment:
Q  208 tatagaaatctctttaagcaaaggaaactctccaaggcataaccattcctccaacatgttgcaatcattgataatacacaatttttgtaaagatggaaga 307  Q
    |||| ||| |||||||||  || ||||| || |||| ||||||||||||||||||   |||||| || | ||| |   ||||||||||||||| ||||||    
T  6734338 tatataaagctctttaagagaaagaaacccttcaagacataaccattcctccaactctttgcaaccactaatatt---caatttttgtaaagaaggaaga 6734434  T
Q  308 tgttgaggcaatactcttttcaatttggaacaatcacttatataaagctctttaagcagaggaaaccttacacatatccattc 390  Q
    ||||||||||     | ||||| ||| | |||||   ||||| |||||||| |||||| ||||||||||||||||||||||||    
T  6734435 tgttgaggcagggtgcctttcagtttaggacaatttgttatagaaagctctataagcaaaggaaaccttacacatatccattc 6734517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 208 - 390
Target Start/End: Complemental strand, 6781325 - 6781146
Alignment:
Q  208 tatagaaatctctttaagcaaaggaaactctccaaggcataaccattcctccaacatgttgcaatcattgataatacacaatttttgtaaagatggaaga 307  Q
    |||| ||| |||||||||  || ||||| || |||| ||||||||||||||||||   |||||| || | ||| |   ||||||||||||||| ||||||    
T  6781325 tatataaagctctttaagagaaagaaacccttcaagacataaccattcctccaactctttgcaaccactaatatt---caatttttgtaaagaaggaaga 6781229  T
Q  308 tgttgaggcaatactcttttcaatttggaacaatcacttatataaagctctttaagcagaggaaaccttacacatatccattc 390  Q
    ||||||||||     | ||||| ||| | |||||   ||||| |||||||| |||||| ||||||||||||||||||||||||    
T  6781228 tgttgaggcagggtgcctttcagtttaggacaatttgttatagaaagctctataagcaaaggaaaccttacacatatccattc 6781146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 44 - 203
Target Start/End: Original strand, 6898447 - 6898606
Alignment:
Q  44 ggcaattcatttaccaaaattctatcacatctatatatatctaactctatgatattatcacacttgggaattgatgcctccatcttgttgcaatcactaa 143  Q
    ||||||||||||| |||||| | ||||||||| | ||  |||| |||  |||||||||||  |||||||||||| |||| || ||  | ||||||| |||    
T  6898447 ggcaattcatttatcaaaatgccatcacatctctttagttctagctcactgatattatcagccttgggaattgaagcctgcaactcttggcaatcaataa 6898546  T
Q  144 tctgcagattttgtaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaat 203  Q
    | | ||  ||||| ||||||||||||||||||||||| |  |||||||| || |||||||    
T  6898547 ttttcaacttttgcaaagaaggaaggtgttgaggcagggaacttttcaacttcggacaat 6898606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 257 - 374
Target Start/End: Original strand, 8453069 - 8453183
Alignment:
Q  257 tccaacatgttgcaatcattgataatacacaatttttgtaaagatggaagatgttgaggcaatactcttttcaatttggaacaatcacttatataaagct 356  Q
    |||||||| ||||||||||| || |   |||||||||||||||| ||||| ||||||||||      |||||||||||| ||| || |||||||||||||    
T  8453069 tccaacatcttgcaatcattaatga---acaatttttgtaaagaaggaaggtgttgaggcagggacattttcaatttgggacattctcttatataaagct 8453165  T
Q  357 ctttaagcagaggaaacc 374  Q
    ||||||||| ||||||||    
T  8453166 ctttaagcaaaggaaacc 8453183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 44 - 257
Target Start/End: Original strand, 6140645 - 6140858
Alignment:
Q  44 ggcaattcatttaccaaaattctatcacatctatatatatctaactctatgatattatcacacttgggaattgatgcctccatcttgttgcaatcactaa 143  Q
    ||||||||||||| |||||| | ||||||||| | ||  ||||  ||  |||||||| ||  |||||||||||| ||||||| ||  | ||||||| |||    
T  6140645 ggcaattcatttatcaaaatgccatcacatctctttagttctatatcactgatattagcagccttgggaattgaagcctccaactcttcgcaatcaataa 6140744  T
Q  144 tctgcagattttgtaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatcggatatagaaatctctttaagcaaaggaaactctccaag 243  Q
    ||| ||  ||||| ||| ||||||| || |||||||| || |||||||| |||||||| |    || | ||| ||||| ||||||||| ||  || ||||    
T  6140745 tctccaacttttgcaaacaaggaagatgatgaggcagggcacttttcaacttgggacattgttttagacaaagctcttgaagcaaagggaaaccttcaag 6140844  T
Q  244 gcataaccattcct 257  Q
    ||||||||||||||    
T  6140845 gcataaccattcct 6140858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 44 - 257
Target Start/End: Original strand, 6880875 - 6881088
Alignment:
Q  44 ggcaattcatttaccaaaattctatcacatctatatatatctaactctatgatattatcacacttgggaattgatgcctccatcttgttgcaatcactaa 143  Q
    ||||||||||||| ||||||   ||||||||| | ||  |||| |||  |||||||| ||  |||||||||||| ||| ||| ||  | ||||||| |||    
T  6880875 ggcaattcatttatcaaaatgtcatcacatctctttagttctagctcagtgatattagcagccttgggaattgaagccgccaactcttggcaatcaataa 6880974  T
Q  144 tctgcagattttgtaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatcggatatagaaatctctttaagcaaaggaaactctccaag 243  Q
    ||| ||  ||||| |||||||| ||||||||||| || || |||||||| ||||||||||    |||| ||| || || ||||||||| ||  || ||||    
T  6880975 tctccaatttttgcaaagaagggaggtgttgaggaagggcacttttcaacttgggacaatgttttatacaaagcttttgaagcaaagggaaaccttcaag 6881074  T
Q  244 gcataaccattcct 257  Q
     |||||||||||||    
T  6881075 acataaccattcct 6881088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 44 - 203
Target Start/End: Original strand, 7748361 - 7748520
Alignment:
Q  44 ggcaattcatttaccaaaattctatcacatctatatatatctaactctatgatattatcacacttgggaattgatgcctccatcttgttgcaatcactaa 143  Q
    |||||||||||||  ||||| | ||||||||| | ||  ||||  ||  |||||||||||  |||||||||||| |||| || ||  | ||||||| |||    
T  7748361 ggcaattcatttattaaaatgccatcacatctctttagttctaggtcactgatattatcagccttgggaattgaagcctgcaactcttggcaatcaataa 7748460  T
Q  144 tctgcagattttgtaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaat 203  Q
    ||| ||  ||||| ||||||||||||||||||||||| |  |||||||| || |||||||    
T  7748461 tctccaatttttgcaaagaaggaaggtgttgaggcagggaacttttcaacttcggacaat 7748520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 257
Target Start/End: Original strand, 6167256 - 6167469
Alignment:
Q  44 ggcaattcatttaccaaaattctatcacatctatatatatctaactctatgatattatcacacttgggaattgatgcctccatcttgttgcaatcactaa 143  Q
    ||||||||||||| | |||| | ||||||||| | ||  ||||  ||  |||||||| ||  |||||||||||| ||||||| ||  | ||||||| |||    
T  6167256 ggcaattcatttatcgaaatgccatcacatctctttagttctatatcactgatattagcagccttgggaattgaagcctccaactcttcgcaatcaataa 6167355  T
Q  144 tctgcagattttgtaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatcggatatagaaatctctttaagcaaaggaaactctccaag 243  Q
    | | ||  ||||| ||| ||||||| || ||||||||||| |||||||| |||||||| |    || | ||| ||||| ||||||||| ||  || ||||    
T  6167356 tttccaacttttgcaaacaaggaagatgatgaggcagagcacttttcaacttgggacattgttttagacaaagctcttgaagcaaagggaaaccttcaag 6167455  T
Q  244 gcataaccattcct 257  Q
    ||||||||||||||    
T  6167456 gcataaccattcct 6167469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 44 - 180
Target Start/End: Original strand, 5297104 - 5297240
Alignment:
Q  44 ggcaattcatttaccaaaattctatcacatctatatatatctaactctatgatattatcacacttgggaattgatgcctccatcttgttgcaatcactaa 143  Q
    ||||||||||||||||||||  | |||||||  | ||  |||| ||| |  |||||||||  ||||||||| || ||||||| ||  | |||||||||||    
T  5297104 ggcaattcatttaccaaaatgttttcacatccttttagctctagctcaacaatattatcagccttgggaatcgaagcctccaactcttggcaatcactaa 5297203  T
Q  144 tctgcagattttgtaaagaaggaaggtgttgaggcag 180  Q
    ||| ||  ||||| ||||||||||| |||||||||||    
T  5297204 tcttcaatttttgcaaagaaggaagatgttgaggcag 5297240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 131 - 235
Target Start/End: Original strand, 6734396 - 6734500
Alignment:
Q  131 ttgcaatcactaatctgcagattttgtaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatcggatatagaaatctctttaagcaaag 230  Q
    |||||| ||||||| | ||  ||||||||||||||||| ||||||||||| |  | ||||| ||| |||||||  | |||||||| |||| |||||||||    
T  6734396 ttgcaaccactaatattcaatttttgtaaagaaggaagatgttgaggcagggtgcctttcagtttaggacaatttgttatagaaagctctataagcaaag 6734495  T
Q  231 gaaac 235  Q
    |||||    
T  6734496 gaaac 6734500  T

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Target: chr3; HSP #48
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 131 - 235
Target Start/End: Complemental strand, 6781267 - 6781163
Alignment:
Q  131 ttgcaatcactaatctgcagattttgtaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatcggatatagaaatctctttaagcaaag 230  Q
    |||||| ||||||| | ||  ||||||||||||||||| ||||||||||| |  | ||||| ||| |||||||  | |||||||| |||| |||||||||    
T  6781267 ttgcaaccactaatattcaatttttgtaaagaaggaagatgttgaggcagggtgcctttcagtttaggacaatttgttatagaaagctctataagcaaag 6781168  T
Q  231 gaaac 235  Q
    |||||    
T  6781167 gaaac 6781163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 133 - 257
Target Start/End: Original strand, 6915549 - 6915673
Alignment:
Q  133 gcaatcactaatctgcagattttgtaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatcggatatagaaatctctttaagcaaagga 232  Q
    ||||||| |||||| ||  ||||| ||||||||||||||||||||||| |  |||||||| ||||||||||    |||| ||| ||||| |||||||||     
T  6915549 gcaatcaataatctccaatttttgcaaagaaggaaggtgttgaggcagggaacttttcaacttgggacaatgttttatacaaagctcttgaagcaaaggg 6915648  T
Q  233 aactctccaaggcataaccattcct 257  Q
    ||   | |||| |||||||||||||    
T  6915649 aaacattcaagacataaccattcct 6915673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 286 - 376
Target Start/End: Original strand, 6945728 - 6945821
Alignment:
Q  286 caatttttgtaaagatggaagatgttgaggcaata---ctcttttcaatttggaacaatcacttatataaagctctttaagcagaggaaacctt 376  Q
    ||||||||||||||| ||||| ||||||||||  |   | ||||||||||||| |||||  ||||||  |||||||||||||| ||||||||||    
T  6945728 caatttttgtaaagaaggaaggtgttgaggcagcaaggcccttttcaatttgggacaatttcttatagtaagctctttaagcaaaggaaacctt 6945821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 287 - 374
Target Start/End: Original strand, 8588273 - 8588360
Alignment:
Q  287 aatttttgtaaagatggaagatgttgaggcaatactcttttcaatttggaacaatcacttatataaagctctttaagcagaggaaacc 374  Q
    |||||||||||||| ||||| |||||||||||  | ||||||||||  | ||| ||||||||| | |||| |||||||| ||||||||    
T  8588273 aatttttgtaaagaaggaaggtgttgaggcaaagcccttttcaattcaggacattcacttataaatagctttttaagcaaaggaaacc 8588360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 110 - 257
Target Start/End: Complemental strand, 13272157 - 13272010
Alignment:
Q  110 ggaattgatgcctccatcttgttgcaatcactaatctgcagattttgtaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatcggata 209  Q
    |||||||| ||||||| ||  | ||||||| |||||| ||  ||||| ||| |||||| ||| ||||||||||| || ||||| ||||||||||  | ||    
T  13272157 ggaattgaagcctccaactcttggcaatcaataatctccaacttttgcaaacaaggaacgtgctgaggcagagcactcttcaacttgggacaatgcgtta 13272058  T
Q  210 tagaaatctctttaagcaaaggaaactctccaaggcataaccattcct 257  Q
    || ||| ||||| |||||| || ||  || |||| |||||||||||||    
T  13272057 tacaaagctcttgaagcaatgggaaaccttcaagacataaccattcct 13272010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #53
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 289 - 373
Target Start/End: Complemental strand, 6841143 - 6841059
Alignment:
Q  289 tttttgtaaagatggaagatgttgaggcaatactcttttcaatttggaacaatcacttatataaagctctttaagcagaggaaac 373  Q
    |||||||||||| ||||| ||||||||||   | |||||||||| || |||||  |||||| ||| ||||||||||| |||||||    
T  6841143 tttttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaatttcttatagaaatctctttaagcaaaggaaac 6841059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #54
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 286 - 373
Target Start/End: Complemental strand, 6450367 - 6450280
Alignment:
Q  286 caatttttgtaaagatggaagatgttgaggcaatactcttttcaatttggaacaatcacttatataaagctctttaagcagaggaaac 373  Q
    |||||||| |||||| ||||| ||||||||||   | ||||||| ||||| |||||  ||||| | |||||||||||| |||||||||    
T  6450367 caatttttctaaagaaggaaggtgttgaggcagggcccttttcagtttgggacaatttcttatttcaagctctttaagtagaggaaac 6450280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #55
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 120 - 235
Target Start/End: Complemental strand, 6556045 - 6555930
Alignment:
Q  120 cctccatcttgttgcaatcactaatctgcagattttgtaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatcggatatagaaatctc 219  Q
    |||||| | ||||||||||| | |||  || |||||||||||| ||||| ||||||||||   | ||||||||||| |||||||    |||| ||| |||    
T  6556045 cctccaacatgttgcaatcattgatccacaaattttgtaaagatggaagatgttgaggcaatactcttttcaatttaggacaattttctatataaagctc 6555946  T
Q  220 tttaagcaaaggaaac 235  Q
    |||||||| |||||||    
T  6555945 tttaagcagaggaaac 6555930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #56
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 286 - 373
Target Start/End: Complemental strand, 6730295 - 6730208
Alignment:
Q  286 caatttttgtaaagatggaagatgttgaggcaatactcttttcaatttggaacaatcacttatataaagctctttaagcagaggaaac 373  Q
    |||||||| |||||| ||||| ||||||||||   | ||||||| ||||| |||||  ||||| | |||||||||||| |||||||||    
T  6730295 caatttttctaaagaaggaaggtgttgaggcagggcccttttcagtttgggacaatttcttatttcaagctctttaagtagaggaaac 6730208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #57
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 290 - 373
Target Start/End: Complemental strand, 6841007 - 6840924
Alignment:
Q  290 ttttgtaaagatggaagatgttgaggcaatactcttttcaatttggaacaatcacttatataaagctctttaagcagaggaaac 373  Q
    ||||||||||| ||||| ||||||||||   | |||||||||| || |||||  |||||| ||| ||||||||||| |||||||    
T  6841007 ttttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaatttcttatagaaatctctttaagcaaaggaaac 6840924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #58
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 201
Target Start/End: Original strand, 6257561 - 6257718
Alignment:
Q  44 ggcaattcatttaccaaaattctatcacatctatatatatctaactctatgatattatcacacttgggaattgatgcctccatcttgttgcaatcactaa 143  Q
    ||||||||||||| |||||| | ||||||||| | ||  ||||  ||  |||||||| ||  ||| |||||| | ||||||| ||  | ||||||| |||    
T  6257561 ggcaattcatttatcaaaatgccatcacatctctttagttctatatcactgatattagcagcctttggaattaaagcctccaactcttcgcaatcaataa 6257660  T
Q  144 tctgcagattttgtaaagaaggaaggtgttgaggcagagcccttttcaatttgggaca 201  Q
    ||| ||  ||||| ||| ||||||| || |||||||| || |||||||| ||||||||    
T  6257661 tctccaacttttgcaaacaaggaagatgatgaggcagggcacttttcaacttgggaca 6257718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #59
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 203
Target Start/End: Complemental strand, 6850886 - 6850789
Alignment:
Q  106 cttgggaattgatgcctccatcttgttgcaatcactaatctgcagattttgtaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaat 203  Q
    |||||||||||| ||| ||| ||  | ||||||| |||||| ||  |||||  ||||||| |||||||||||||| || |||||||| || |||||||    
T  6850886 cttgggaattgaagccgccaactcttggcaatcaataatctccaatttttgctaagaagggaggtgttgaggcagggcacttttcaacttcggacaat 6850789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 363
Target Start/End: Complemental strand, 9465 - 9123
Alignment:
Q  18 aaaggaataaccttttcaggctcgtcggcaattcatttaccaaaattctatcacatctatatatatctaactctatgatattatcacacttgggaattga 117  Q
    |||||| ||| ||||||| ||| |||||||||||||||||||||||||||||||| || | ||||||||||||||| |||||||||||||||||||||||    
T  9465 aaaggagtaaacttttcaagctggtcggcaattcatttaccaaaattctatcacaactttgtatatctaactctatcatattatcacacttgggaattga 9366  T
Q  118 tgcctccatcttgttgcaatcactaatctgcagattttgtaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatcggatatagaaatc 217  Q
    ||| |||| ||||||||||||| ||||   ||  ||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||| |    
T  9365 tgcttccaacttgttgcaatcattaatgaacaatttttgtaaagaaggaaggtgttgtggcagagcccttttcaattcgggacaattggatatagaaaac 9266  T
Q  218 tctttaagcaaaggaaactctccaaggcataaccattcctccaacatgttgcaatcattgataatacacaatttttgtaaagatggaagatgttgaggca 317  Q
    || ||||||||||||||||||||||||||||||||||||||||||  |||||||| ||||||    | ||| ||| ||||||| ||||||||||||||||    
T  9265 tcgttaagcaaaggaaactctccaaggcataaccattcctccaactcgttgcaataattgatc---cgcaaatttagtaaagaaggaagatgttgaggca 9169  T
Q  318 atactcttttcaatttggaacaatcacttatataaagctctttaag 363  Q
    |||| ||||| ||||| |||||||  | |||| |||||||||||||    
T  9168 atacccttttgaatttagaacaataccatatagaaagctctttaag 9123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 120 - 390
Target Start/End: Complemental strand, 9228 - 8961
Alignment:
Q  120 cctccatcttgttgcaatcactaatctgcagattttgtaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatcggatatagaaatctc 219  Q
    |||||| || |||||||| | | ||| ||| |||| ||||||||||||| ||||||||||   ||||||| ||||| | |||||   ||||||||| |||    
T  9228 cctccaactcgttgcaataattgatccgcaaatttagtaaagaaggaagatgttgaggcaatacccttttgaatttagaacaataccatatagaaagctc 9129  T
Q  220 tttaagcaaaggaaactctccaaggcataaccattcctccaacatgttgcaatcattgataatacacaatttttgtaaagatggaagatgttgaggcaat 319  Q
    ||||||  || ||||| || |||| ||||||||||||||||||   |||||| |||  |||||   ||||||||||||||| ||||||||||||||||      
T  9128 tttaagagaaagaaacccttcaagacataaccattcctccaactctttgcaaccataaataat---caatttttgtaaagaaggaagatgttgaggcagg 9032  T
Q  320 actcttttcaatttggaacaatcacttatataaagctctttaagcagaggaaaccttacacatatccattc 390  Q
       ||||||||||| | |||||    |||||||||||||||||||||||||||||||||||||||||||||    
T  9031 gtgcttttcaatttaggacaattttctatataaagctctttaagcagaggaaaccttacacatatccattc 8961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1643 (Bit Score: 123; Significance: 4e-63; HSPs: 1)
Name: scaffold1643
Description:

Target: scaffold1643; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 18 - 259
Target Start/End: Original strand, 500 - 744
Alignment:
Q  18 aaaggaataaccttttcaggctcgtcggcaattcatttaccaaaattctatcacatctatatatatctaactctatgatattatcacacttgggaattga 117  Q
    |||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||   ||||||||||||||| |||||||||| ||||||||||||    
T  500 aaaggaataaccttttcaagctggtcgacaattcatttaccaaaattctatcacatctccttatatctaactctatcatattatcactcttgggaattga 599  T
Q  118 tgcctccatcttgttgcaatcactaatctgcagattttgtaaagaaggaaggtgttgaggcaga---gcccttttcaatttgggacaatcggatatagaa 214  Q
    |||||||||||||||||||||| |||| | ||| ||||||||| ||||||||||||||||||||   |||||||  ||||||||||| |    ||||| |    
T  600 tgcctccatcttgttgcaatcagtaatattcagtttttgtaaaaaaggaaggtgttgaggcagagtggccctttctaatttgggacactttcttatagta 699  T
Q  215 atctctttaagcaaaggaaactctccaaggcataaccattcctcc 259  Q
    | ||||||||||||||||||| || || | || ||||||||||||    
T  700 agctctttaagcaaaggaaacccttcaggacacaaccattcctcc 744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0958 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0958
Description:

Target: scaffold0958; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 47 - 235
Target Start/End: Complemental strand, 1462 - 1275
Alignment:
Q  47 aattcatttaccaaaattctatcacatctatatatatctaactctatgatattatcacacttgggaattgatgcctccatcttgttgcaatcactaatct 146  Q
    ||||||||||||||||| ||||||||||  | ||  |||| |||| |||||||||||  ||| ||||||||  |||||| ||||  ||| || ||||| |    
T  1462 aattcatttaccaaaatgctatcacatccgtttag-tctagctctctgatattatcagccttaggaattgaaacctccaacttgcagcactcgctaatat 1364  T
Q  147 gcagattttgtaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatcggatatagaaatctctttaagcaaaggaaac 235  Q
     ||   |||||||||||||||||||| |||| || |||||||||||| || ||||||    ||||||||  | ||||||||||||||||    
T  1363 ccaatatttgtaaagaaggaaggtgtcgaggtagggcccttttcaatatgcgacaatatcttatagaaagatttttaagcaaaggaaac 1275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 235
Target Start/End: Complemental strand, 6574890 - 6574808
Alignment:
Q  153 tttgtaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatcggatatagaaatctctttaagcaaaggaaac 235  Q
    |||| |||||| |||||| |||||||||   |||||||||||||||||||| |  |||| ||| |||||| ||||| ||||||    
T  6574890 tttgcaaagaaagaaggttttgaggcaggaaccttttcaatttgggacaatggtctatataaagctctttgagcaagggaaac 6574808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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