View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17192_low_4 (Length: 329)
Name: NF17192_low_4
Description: NF17192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17192_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 23 - 326
Target Start/End: Original strand, 34420816 - 34421119
Alignment:
| Q |
23 |
gacacgacacatacatagtctttttactcgtaaacaaaatgttgagccacttttaaacttgattttgtttggaatttgatcaagagatttactggcataa |
122 |
Q |
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| T |
34420816 |
gacacgacacatacatactctttttactcgtaaacaaaatgttgagccacttttaaacttgattttgtttggaatttgatcaagagatttactggcataa |
34420915 |
T |
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| Q |
123 |
acactgcaatattgcataattattttgaacaatatttattatagaaacttgtttcaaaaataaatttagcaatacaaattttatttatatttctaacaat |
222 |
Q |
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| T |
34420916 |
acactgcaatattgcataattattttgaacaatatttattatagaaacttgtttaaaaaataaatttagcaatacgaattttatttatatttctaacaat |
34421015 |
T |
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| Q |
223 |
agatcatcccaagtttaactgcttttttaatagaaattgccaattcatcgtaagcaatttcccaagcagtatttagttcttcgctccagttgtcccccta |
322 |
Q |
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| T |
34421016 |
agatcatcccaagtttaactgcttttttaatagaaattgccaattcatcgtaagcaatttcccaagcagtatttagttcttcgctccagttgtcccccga |
34421115 |
T |
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| Q |
323 |
tgct |
326 |
Q |
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|||| |
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| T |
34421116 |
tgct |
34421119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 210 - 319
Target Start/End: Original strand, 34429218 - 34429331
Alignment:
| Q |
210 |
tatttctaacaatagatcatcccaagtttaact----gcttttttaatagaaattgccaattcatcgtaagcaatttcccaagcagtatttagttcttcg |
305 |
Q |
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||||| ||||||||||||||| ||| ||||||| | ||| ||||| ||| ||||||| |||| ||||||| ||||||||||||| ||||||||||| |
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| T |
34429218 |
tatttataacaatagatcatctcaaatttaactcattgatttcttaattgaagctgccaatccatcataagcaacttcccaagcagtacttagttcttcg |
34429317 |
T |
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| Q |
306 |
ctccagttgtcccc |
319 |
Q |
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||||||||| |||| |
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| T |
34429318 |
ctccagttgccccc |
34429331 |
T |
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