View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17192_low_6 (Length: 262)
Name: NF17192_low_6
Description: NF17192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17192_low_6 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 12 - 262
Target Start/End: Complemental strand, 37793605 - 37793355
Alignment:
| Q |
12 |
aattctacatcgtacacagaactaaagtattcatgttcacactctgcaggaaataatgcatccattaaaggattttcatgtgatattgtggaagtaacat |
111 |
Q |
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| T |
37793605 |
aattctacatcgtacacagaactaaagtattcatgttcacactctgcaggaaataatgcatccattaaaggattttcatgtgatattgtggaagtaacat |
37793506 |
T |
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| Q |
112 |
tttccattgttattgaagagaatccatttgatgatggttgtgaagatactggactaacactattgggatcaatgttgtactcaaaaactccttcaatttt |
211 |
Q |
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| T |
37793505 |
tttccattgttattgaagagaatccatttgatgatggttgtgaagatactggactaacactattgggatcaatgttgtactcaaaaactccttcaatttt |
37793406 |
T |
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| Q |
212 |
cttggcttcttccattgtaaggtgattacgaaggacatgtgaactgtcaat |
262 |
Q |
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| T |
37793405 |
cttggcttcttccattgtaaggtgattacgaaggaaatgtgaactgtcaat |
37793355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 83 - 239
Target Start/End: Complemental strand, 37793066 - 37792910
Alignment:
| Q |
83 |
attttcatgtgatattgtggaagtaacattttccattgttattgaagagaatccatttgatgatggttgtgaagatactggactaacactattgggatca |
182 |
Q |
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| T |
37793066 |
attttcatgtgatatagtggaagcgaaattttctgttgttatgcaagagaatccacttgaaaatggttgtgaagatagtggactcgtaatattgggatcg |
37792967 |
T |
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| Q |
183 |
atgttgtactcaaaaactccttcaattttcttggcttcttccattgtaaggtgatta |
239 |
Q |
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| T |
37792966 |
atattgttctcaaaaactccttcaagtttcttggtttcttccattgtagggtgatta |
37792910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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