View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17193_high_2 (Length: 304)
Name: NF17193_high_2
Description: NF17193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17193_high_2 |
 | |
|
| [»] scaffold0231 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0231 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: scaffold0231
Description:
Target: scaffold0231; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 9 - 289
Target Start/End: Complemental strand, 10337 - 10057
Alignment:
| Q |
9 |
acatcatcagtaaaagtcttgtgtatgaactatagctgataaccttttaaatctttaaattcaaaagaagagatgttaaaacgacataattaacagatgt |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
10337 |
acatcatcagtaaaagtcttgtgtatgaactatagctgataaccttttaaatctttaaattcaaaagaagagatgttaaaacgacataattaagagatgt |
10238 |
T |
|
| Q |
109 |
taaacaccactgatattgtttgcattgcttccaaattttttgaatgtaggcaaaaatagtagaaggaaaatggactcaaaggaacacaagggtgagaagt |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10237 |
taaacaccactgatattgtttgcattgcttccaaattttttgaatgtaggcaaaaatagtagaaggaaaatggactcaaaggaacacaagggtgagaagt |
10138 |
T |
|
| Q |
209 |
aacaatataaaatgtagtgtacagatcttgcacaaagagaacttatgcagtcaagagctggtactgtgctcagtcttagtt |
289 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10137 |
aacaatataaaatgtagtgtacagatcttgcacaaagagaacttatgcagtcaagagctggtactgtgctcagtcttagtt |
10057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 57 - 289
Target Start/End: Complemental strand, 24237571 - 24237332
Alignment:
| Q |
57 |
aaatctttaaattcaaaagaagagatgttaaaacgacataattaac----agatgttaaacaccactgatattgtttgcattgcttccaaattttttgaa |
152 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24237571 |
aaatcttcaaattcaaaagaagagatgttaaaacgacataattaattaagagatgttaaacaccactgatattgtttgcattgcttccaaattttttgaa |
24237472 |
T |
|
| Q |
153 |
tgtaggcaaaaatagtagaaggaaaatggactcaaaggaacacaagggtgagaagtaacaatataaaatgtagtgtaca---gatcttgcacaaagagaa |
249 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
24237471 |
tgtaggcaaaaaaagtagaaggaaaatggactcaaaggaacacaagggtgagaagttacaatataaaatgtagtgtacactctatcttgcacaaagagaa |
24237372 |
T |
|
| Q |
250 |
cttatgcagtcaagagctggtactgtgctcagtcttagtt |
289 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
24237371 |
cttatgcagtcaagagatggtactgtgctcagtcttagtt |
24237332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 13 - 60
Target Start/End: Complemental strand, 24237650 - 24237603
Alignment:
| Q |
13 |
catcagtaaaagtcttgtgtatgaactatagctgataaccttttaaat |
60 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
24237650 |
catcagtaaaagtcttgtgtatgaactataactgataaccttttaaat |
24237603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 233 - 289
Target Start/End: Original strand, 40478136 - 40478192
Alignment:
| Q |
233 |
atcttgcacaaagagaacttatgcagtcaagagctggtactgtgctcagtcttagtt |
289 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
40478136 |
atcttgcaccaagaaaacttatgcagtcaagagctggtacagtgctcagtcttagtt |
40478192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 286
Target Start/End: Complemental strand, 44861585 - 44861532
Alignment:
| Q |
233 |
atcttgcacaaagagaacttatgcagtcaagagctggtactgtgctcagtctta |
286 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
44861585 |
atcttgcaccaagaaaacttatgcagtcaagagctggtactgtgccctgtctta |
44861532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University