View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17193_low_1 (Length: 346)

Name: NF17193_low_1
Description: NF17193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17193_low_1
NF17193_low_1
[»] chr8 (1 HSPs)
chr8 (1-333)||(9284295-9284627)
[»] chr5 (2 HSPs)
chr5 (1-333)||(19918519-19918849)
chr5 (4-264)||(24665558-24665814)
[»] scaffold0002 (2 HSPs)
scaffold0002 (45-333)||(372166-372454)
scaffold0002 (4-101)||(369637-369734)
[»] chr2 (4 HSPs)
chr2 (42-333)||(25518573-25518860)
chr2 (169-333)||(18754852-18755016)
chr2 (169-333)||(18756180-18756344)
chr2 (4-68)||(23809881-23809945)
[»] chr7 (4 HSPs)
chr7 (119-325)||(13271215-13271421)
chr7 (4-333)||(24254069-24254397)
chr7 (7-333)||(9023525-9023851)
chr7 (146-333)||(9960820-9961007)
[»] scaffold0039 (1 HSPs)
scaffold0039 (97-333)||(49824-50060)
[»] chr6 (2 HSPs)
chr6 (143-333)||(16145172-16145356)
chr6 (4-70)||(16145412-16145478)
[»] chr1 (1 HSPs)
chr1 (250-333)||(20885404-20885487)


Alignment Details
Target: chr8 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 9284295 - 9284627
Alignment:
Q  1 tgaaaattccaacagatcaatattgaaatatgatttttgacgagttggttgatgtagatgaagaaaggctgactgcatttgacggacttttaagacaaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9284295 tgaaaattccaacagatcaatattgaaatatgatttttgatgacttggttgatgtagatgaagaaaggctgactgcatttgacggacttttaagacaaaa 9284394  T
Q  101 agaacgcattgcaaagaactataataaaaaggtaaaatacaaatcttttaacaatagagatttggttaggaaagtactttttcctatggacaaaagagac 200  Q
    ||||| ||||||||||  |||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  9284395 agaacacattgcaaaggcctataataaaaaggtaaaatacaaatctttcaacaatggagatttggtttggaaagtactttttcctatggacaaaagagac 9284494  T
Q  201 aaagtcttaggcaaatggtcatcgaattgggaaggaccatttgaagtcatacaagtattttcaaatggtgcttacgaaatagaagaattggcttccaaca 300  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  9284495 aaagtcttaagcaaatggtcatcgaattgggaaggaccatttgaagtcatacaagtattttcaaatggtgcttacgaaatagaagaattggcttccgaca 9284594  T
Q  301 aaagaatgttcagaataaatggtaagtatttga 333  Q
    ||||||| |||||||||| ||||||||||||||    
T  9284595 aaagaatattcagaataagtggtaagtatttga 9284627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 19918519 - 19918849
Alignment:
Q  1 tgaaaattccaacagatcaatattgaaatatgatttttgacgagttggttgatgtagatgaagaaaggctgactgcatttgacggacttttaagacaaaa 100  Q
    |||||||||||||| ||||| |||| |||||||| || |||||||||||||||||||||||||||||||| |||||||| || | ||||| |||||||||    
T  19918519 tgaaaattccaacatatcaacattggaatatgatgttggacgagttggttgatgtagatgaagaaaggctaactgcattggatgtactttaaagacaaaa 19918618  T
Q  101 agaacgcattgcaaagaactataataaaaaggtaaaatacaaatcttttaacaatagagatttggttaggaaagtactttttcctatggacaaaagagac 200  Q
    ||||||| |||||||   ||||||||||||||||||||  |||||||| |||||| ||||||||||| ||||||||||||| |||||| | |||| ||||    
T  19918619 agaacgcgttgcaaaagcctataataaaaaggtaaaatcaaaatctttcaacaatggagatttggtttggaaagtacttttgcctatgaataaaatagac 19918718  T
Q  201 aaagtcttaggcaaatggtcatcgaattgggaaggaccatttgaagtcatacaagtattttcaaatggtgcttacgaaatagaagaattggcttccaaca 300  Q
    |||||||||| ||||||||||||||||||| ||||||||||||||||  |||||||||||||||||||||||||| |||||||||| ||||||||| | |    
T  19918719 aaagtcttagacaaatggtcatcgaattggaaaggaccatttgaagt-ttacaagtattttcaaatggtgcttacaaaatagaagatttggcttccgata 19918817  T
Q  301 aaagaatgttcagaataaatggtaagtatttga 333  Q
    ||||||| |||| |||||||||| |||||||||    
T  19918818 aaagaatattcaaaataaatggt-agtatttga 19918849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 4 - 264
Target Start/End: Complemental strand, 24665814 - 24665558
Alignment:
Q  4 aaattccaacagatcaatattgaaatatgatttttgacgagttggttgatgtagatgaagaaaggctgactgcatttgacggacttttaagacaaaaaga 103  Q
    ||||||||||| |||||||||| |||||||| || || || |||||||| ||||||||||||||||| |  | ||| || |  ||  |||| ||||| ||    
T  24665814 aaattccaacatatcaatattggaatatgatgttggatgaattggttgacgtagatgaagaaaggctaatggaattggaagtgctcataaggcaaaagga 24665715  T
Q  104 acgcattgcaaagaactataataaaaaggtaaaatacaaatcttttaacaatagagatttggttaggaaagtactttttcctatggacaaaagagacaaa 203  Q
    |||  | ||||||  ||||||||| ||||||||||  |||   ||||| | | ||||||| ||| |||||||||||||  | ||||| |||||||| |      
T  24665714 acgtgtcgcaaaggcctataataagaaggtaaaatcaaaaatgtttaaaattggagattttgtttggaaagtacttttgtcgatggaaaaaagagata-- 24665617  T
Q  204 gtcttaggcaaatggtcatcgaattgggaaggaccatttgaagtcatacaagtattttcaa 264  Q
      ||| |||||||||||||| |||||| ||||||||||| |||| ||||||||||||||||    
T  24665616 --cttgggcaaatggtcatcaaattggaaaggaccatttaaagttatacaagtattttcaa 24665558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 141; Significance: 7e-74; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 45 - 333
Target Start/End: Original strand, 372166 - 372454
Alignment:
Q  45 ttggttgatgtagatgaagaaaggctgactgcatttgacggacttttaagacaaaaagaacgcattgcaaagaactataataaaaaggtaaaatacaaat 144  Q
    ||||||||| ||||||||||||||| ||||||||| |||  || ||| ||||||||||||||   |||||| | ||||||||||||||||||||  ||||    
T  372166 ttggttgatttagatgaagaaaggccgactgcattggacatacgtttgagacaaaaagaacgtggtgcaaaaacctataataaaaaggtaaaatcaaaat 372265  T
Q  145 cttttaacaatagagatttggttaggaaagtactttttcctatggacaaaagagacaaagtcttaggcaaatggtcatcgaattgggaaggaccatttga 244  Q
    | || || | | |||||||||||   ||||||||||||||||||||||||| ||||||||||||||| || ||||||  |||||||||||||||||||||    
T  372266 cattcaatattggagatttggttttaaaagtactttttcctatggacaaaaaagacaaagtcttaggtaagtggtcactgaattgggaaggaccatttga 372365  T
Q  245 agtcatacaagtattttcaaatggtgcttacgaaatagaagaattggcttccaacaaaagaatgttcagaataaatggtaagtatttga 333  Q
    ||| |||||||||||||||| ||||| ||| ||||| ||||||||||||||| | |||||||| |||||||| || |||||||||||||    
T  372366 agttatacaagtattttcaattggtgtttatgaaattgaagaattggcttccgaaaaaagaatattcagaatgaaaggtaagtatttga 372454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 4 - 101
Target Start/End: Complemental strand, 369734 - 369637
Alignment:
Q  4 aaattccaacagatcaatattgaaatatgatttttgacgagttggttgatgtagatgaagaaaggctgactgcatttgacggacttttaagacaaaaa 101  Q
    ||||||||  ||||||||||| ||||||||| || || |||||||||||||| |||||||||||| |||  ||||| || | ||||||||| ||||||    
T  369734 aaattccagtagatcaatatttaaatatgatgttggatgagttggttgatgtggatgaagaaaggttgatggcattagaagtacttttaaggcaaaaa 369637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 131; Significance: 6e-68; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 42 - 333
Target Start/End: Original strand, 25518573 - 25518860
Alignment:
Q  42 gagttggttgatgtagatgaagaaaggctgactgcatttgacggacttttaagacaaaaagaacgcattgcaaagaactataataaaaaggtaaaataca 141  Q
    |||||||||||  |||||||||||||| |||||||||| ||||  |||||||||||||||||||   ||||||||  | ||||||||||||||||||  |    
T  25518573 gagttggttgacttagatgaagaaaggatgactgcattggacgtgcttttaagacaaaaagaacatgttgcaaaggcccataataaaaaggtaaaatcaa 25518672  T
Q  142 aatcttttaacaatagagatttggttaggaaagtactttttcctatggacaaaagagacaaagtcttaggcaaatggtcatcgaattgggaaggaccatt 241  Q
    ||||||| || | || |||||||| | ||||||||||||| |||||| ||||||||||||||||||| ||||| |||||   ||||| |||||| |||||    
T  25518673 aatctttcaatattaaagatttgggttggaaagtacttttgcctatgtacaaaagagacaaagtcttgggcaagtggtctctgaattaggaaggcccatt 25518772  T
Q  242 tgaagtcatacaagtattttcaaatggtgcttacgaaatagaagaattggcttccaacaaaagaatgttcagaataaatggtaagtatttga 333  Q
    ||||||     |||| ||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||| || ||||||||||||||||    
T  25518773 tgaagt----taagtgttttcaaatggtgcttatgaaattgaagaattggcttccaacaaaagaatattcaggatgaatggtaagtatttga 25518860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 169 - 333
Target Start/End: Original strand, 18754852 - 18755016
Alignment:
Q  169 ggaaagtactttttcctatggacaaaagagacaaagtcttaggcaaatggtcatcgaattgggaaggaccatttgaagtcatacaagtattttcaaatgg 268  Q
    |||| |||||||| ||||||||||||| ||| | |||||||||||||| |||| | |||||| ||| ||||||| | ||  |||||||||| || |||||    
T  18754852 ggaaggtacttttgcctatggacaaaaaagatagagtcttaggcaaatagtcaccaaattggaaagaaccatttaatgttttacaagtattctctaatgg 18754951  T
Q  269 tgcttacgaaatagaagaattggcttccaacaaaagaatgttcagaataaatggtaagtatttga 333  Q
    ||| || || ||||||||||| ||||   | |  | ||| |||||||||||||| ||||||||||    
T  18754952 tgcctatgagatagaagaattagcttttgagagcaaaatattcagaataaatggcaagtatttga 18755016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 169 - 333
Target Start/End: Original strand, 18756180 - 18756344
Alignment:
Q  169 ggaaagtactttttcctatggacaaaagagacaaagtcttaggcaaatggtcatcgaattgggaaggaccatttgaagtcatacaagtattttcaaatgg 268  Q
    |||| |||||||| |||||||| |||| ||| | |||||||||||||| |||| | |||||| ||| ||||||| | ||  |||||||||| || |||||    
T  18756180 ggaaggtacttttgcctatggataaaaaagatagagtcttaggcaaatagtcaccaaattggaaagaaccatttaatgttttacaagtattctctaatgg 18756279  T
Q  269 tgcttacgaaatagaagaattggcttccaacaaaagaatgttcagaataaatggtaagtatttga 333  Q
    ||| || || ||||||||||| ||||   | | || ||| |||||||||||||| ||||||||||    
T  18756280 tgcctatgagatagaagaattagcttttgagagaaaaatattcagaataaatggcaagtatttga 18756344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 4 - 68
Target Start/End: Complemental strand, 23809945 - 23809881
Alignment:
Q  4 aaattccaacagatcaatattgaaatatgatttttgacgagttggttgatgtagatgaagaaagg 68  Q
    ||||||||||| |||| ||||| ||||||||||| || |||||||||||| ||||||||||||||    
T  23809945 aaattccaacaaatcactattggaatatgattttagatgagttggttgatctagatgaagaaagg 23809881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 115; Significance: 2e-58; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 119 - 325
Target Start/End: Complemental strand, 13271421 - 13271215
Alignment:
Q  119 ctataataaaaaggtaaaatacaaatcttttaacaatagagatttggttaggaaagtactttttcctatggacaaaagagacaaagtcttaggcaaatgg 218  Q
    |||||||||||||| |||||  |||||||| || | | ||||||||||| | ||| ||||||| | ||||||||||||||||||||||||||| || |||    
T  13271421 ctataataaaaagggaaaatcaaaatctttcaatattggagatttggtttgtaaaatacttttgcatatggacaaaagagacaaagtcttaggtaagtgg 13271322  T
Q  219 tcatcgaattgggaaggaccatttgaagtcatacaagtattttcaaatggtgcttacgaaatagaagaattggcttccaacaaaagaatgttcagaataa 318  Q
    ||  ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||| | |||||||| |||||||| |    
T  13271321 tcgccgaattgggaaggaccatttgaagttataaaagtattttcaaatggtgcttacgaaatcgaagaattggcttcctataaaagaatattcagaatga 13271222  T
Q  319 atggtaa 325  Q
    |||||||    
T  13271221 atggtaa 13271215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 4 - 333
Target Start/End: Complemental strand, 24254397 - 24254069
Alignment:
Q  4 aaattccaacagatcaatattgaaatatgatttttgacgagttggttgatgtagatgaagaaaggctgactgcatttgacggacttttaagacaaaaaga 103  Q
    ||||||| |||||| ||||||| |||||||| || ||  |||||||||||||||||||||||||| |||  ||||| || |  |||||||| ||||| ||    
T  24254397 aaattccgacagatgaatattggaatatgatgttggataagttggttgatgtagatgaagaaaggatgatggcattggaagtgcttttaaggcaaaagga 24254298  T
Q  104 acgcattgcaaagaactataataaaaaggtaaaatacaaatcttttaacaatagagatttggttaggaaagtactttttcctatggacaaaagagacaaa 203  Q
    |||  |  |||||  ||||||||| ||||||||||  |||||||| |||| |  | ||||  || ||||||||||||| ||||||||||||||||| ||     
T  24254297 acgtgtcacaaaggcctataataagaaggtaaaattaaaatctttgaacattgaaaattttctttggaaagtacttttgcctatggacaaaagagataa- 24254199  T
Q  204 gtcttaggcaaatggtcatcgaattgggaaggaccatttgaagtcatacaagtattttcaaatggtgcttacgaaatagaagaattggcttccaacaaaa 303  Q
    |||||  ||||||||||  | ||||||||||||| |||| |||| ||||||||||||||||||||||| || || ||||||||||| |||||| |||| |    
T  24254198 gtcttgagcaaatggtcgccaaattgggaaggacaatttaaagttatacaagtattttcaaatggtgcgtatgagatagaagaattagcttccgacaata 24254099  T
Q  304 gaatgttcagaataaatggtaagtatttga 333  Q
    |||| |||||||||||||| || |||||||    
T  24254098 gaatattcagaataaatgggaaatatttga 24254069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 7 - 333
Target Start/End: Original strand, 9023525 - 9023851
Alignment:
Q  7 ttccaacagatcaatattgaaatatgatttttgacgagttggttgatgtagatgaagaaaggctgactgcatttgacggacttttaagacaaaaagaacg 106  Q
    ||||||||||||| |||||||||||||| || || |||| |||||| || ||||||||||| ||||  ||||| ||||  ||||| || |||||||||      
T  9023525 ttccaacagatcagtattgaaatatgatgttggatgagtaggttgaggtggatgaagaaagtctgatggcattagacgtgcttttgaggcaaaaagaaaa 9023624  T
Q  107 cattgcaaagaactataataaaaaggtaaaatacaaatcttttaacaatagagatttggttaggaaagtactttttcctatggacaaaagagacaaagtc 206  Q
      | |  ||   ||||||||| |||||||| |  ||| ||||||||  | | ||||| ||  ||||||||||||| ||||||||||||||| | | ||||    
T  9023625 tgtcgtgaaagcctataataagaaggtaaagtcaaaaccttttaaccttggggattttgtatggaaagtacttttgcctatggacaaaagatatagagtc 9023724  T
Q  207 ttaggcaaatggtcatcgaattgggaaggaccatttgaagtcatacaagtattttcaaatggtgcttacgaaatagaagaattggcttccaacaaaagaa 306  Q
    || ||||| |||||| | |||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||| || ||||||||||| ||||    
T  9023725 ttgggcaagtggtcaccaaattgggaaggaccatttaaagttatacaagtattttcaaatggtgcttatgaaatagaagagttagcttccaacaatagaa 9023824  T
Q  307 tgttcagaataaatggtaagtatttga 333  Q
    | |||||||||||||| || |||||||    
T  9023825 tcttcagaataaatggcaaatatttga 9023851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 146 - 333
Target Start/End: Complemental strand, 9961007 - 9960820
Alignment:
Q  146 ttttaacaatagagatttggttaggaaagtactttttcctatggacaaaagagacaaagtcttaggcaaatggtcatcgaattgggaaggaccatttgaa 245  Q
    |||||||| | ||||||  ||| ||||||||| | | ||||||||||||| ||| | ||||||||||||||||||| | |||||||||||||||||| ||    
T  9961007 ttttaacattggagattctgtttggaaagtacatctgcctatggacaaaatagatagagtcttaggcaaatggtcaacaaattgggaaggaccatttaaa 9960908  T
Q  246 gtcatacaagtattttcaaatggtgcttacgaaatagaagaattggcttccaacaaaagaatgttcagaataaatggtaagtatttga 333  Q
    || ||||||||||||| ||||||||| || || ||||||||||| ||||||||||| ||||| |||||||||||||| |||| |||||    
T  9960907 gttatacaagtatttttaaatggtgcgtatgagatagaagaattagcttccaacaatagaatattcagaataaatggcaagtttttga 9960820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 97 - 333
Target Start/End: Original strand, 49824 - 50060
Alignment:
Q  97 aaaaagaacgcattgcaaagaactataataaaaaggtaaaatacaaatcttttaacaatagagatttggttaggaaagtactttttcctatggacaaaag 196  Q
    ||||||||| |||||||||   ||| ||||  ||||||||||  ||||||||||||| | ||||||| ||| ||||||||||||| |||||||| ||||     
T  49824 aaaaagaacacattgcaaaagcctaaaataggaaggtaaaatcaaaatcttttaacattggagattttgtttggaaagtacttttgcctatggaaaaaac 49923  T
Q  197 agacaaagtcttaggcaaatggtcatcgaattgggaaggaccatttgaagtcatacaagtattttcaaatggtgcttacgaaatagaagaattggcttcc 296  Q
    ||| | |||||| || |||||||||   |||||||||| || |||| |||| ||  ||||||||||||||||| | || || |||||  | || |||| |    
T  49924 agatagagtcttgggaaaatggtcactaaattgggaagaacaatttaaagttatgtaagtattttcaaatggttcgtatgagatagagtagttagctttc 50023  T
Q  297 aacaaaagaatgttcagaataaatggtaagtatttga 333  Q
     |||| ||||| |||||||||||||| ||||||||||    
T  50024 gacaatagaatcttcagaataaatggaaagtatttga 50060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 143 - 333
Target Start/End: Complemental strand, 16145356 - 16145172
Alignment:
Q  143 atcttttaacaatagagatttggttaggaaagtactttttcctatggacaaaagagacaaagtcttaggcaaatggtcatcgaattgggaaggaccattt 242  Q
    ||||||||||| | |||||||  || | ||||||||| | ||||||||||||||||| ||||| |||||||| |||||| | |||||| |||||| ||||    
T  16145356 atcttttaacattggagattttatttgaaaagtacttatgcctatggacaaaagagataaagttttaggcaagtggtcaccaaattggaaaggactattt 16145257  T
Q  243 gaagtcatacaagtattttcaaatggtgcttacgaaatagaagaattggcttccaacaaaagaatgttcagaataaatggtaagtatttga 333  Q
          |||||||||||||||||||||||||| | ||||||||| ||  ||||  |||| ||||| || ||||||||||| || |||||||    
T  16145256 ------atacaagtattttcaaatggtgcttatgcaatagaagagttaacttcttacaatagaatatttagaataaatggaaattatttga 16145172  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 4 - 70
Target Start/End: Complemental strand, 16145478 - 16145412
Alignment:
Q  4 aaattccaacagatcaatattgaaatatgatttttgacgagttggttgatgtagatgaagaaaggct 70  Q
    |||||| ||||||||||||||| |||||||| || || ||||||||||| || ||||||||||||||    
T  16145478 aaattcaaacagatcaatattggaatatgatgttggatgagttggttgacgtggatgaagaaaggct 16145412  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 250 - 333
Target Start/End: Complemental strand, 20885487 - 20885404
Alignment:
Q  250 tacaagtattttcaaatggtgcttacgaaatagaagaattggcttccaacaaaagaatgttcagaataaatggtaagtatttga 333  Q
    |||||||||||| |||||||||||| || ||| | ||||| |||||  |||| ||||| |||||||||||||| ||||||||||    
T  20885487 tacaagtatttttaaatggtgcttatgagataaatgaattagcttctgacaatagaatattcagaataaatggcaagtatttga 20885404  T

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