View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17194_low_2 (Length: 712)

Name: NF17194_low_2
Description: NF17194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17194_low_2
NF17194_low_2
[»] chr6 (18 HSPs)
chr6 (1-696)||(1884014-1884709)
chr6 (449-640)||(1878511-1878703)
chr6 (77-232)||(1890734-1890889)
chr6 (1-188)||(1878002-1878189)
chr6 (57-176)||(1911020-1911139)
chr6 (502-636)||(1912116-1912250)
chr6 (521-622)||(1891600-1891701)
chr6 (51-163)||(1901969-1902081)
chr6 (338-419)||(1878346-1878427)
chr6 (77-188)||(1895584-1895695)
chr6 (534-623)||(1906323-1906412)
chr6 (521-623)||(1896638-1896740)
chr6 (340-419)||(1905772-1905851)
chr6 (342-419)||(1895919-1895996)
chr6 (337-433)||(1911409-1911508)
chr6 (340-419)||(1916672-1916751)
chr6 (365-419)||(1891163-1891217)
chr6 (540-621)||(1917223-1917304)
[»] chr2 (1 HSPs)
chr2 (44-131)||(11537490-11537577)
[»] scaffold0103 (1 HSPs)
scaffold0103 (133-182)||(42619-42668)


Alignment Details
Target: chr6 (Bit Score: 583; Significance: 0; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 583; E-Value: 0
Query Start/End: Original strand, 1 - 696
Target Start/End: Original strand, 1884014 - 1884709
Alignment:
Q  1 catagaaaaatgacaagaaaatgggcctttaaaatggattgtataccaattgtggagattataggcaatgaatgcgttgacatggttttactcactttgt 100  Q
    |||||||| |||||||||||| || ||||| | ||||||| | | |||  ||| | |||||||||||||||||| |||||||||| |||||| |||||||    
T  1884014 catagaaagatgacaagaaaacggtccttttacatggattttctgccacctgttgtgattataggcaatgaatgtgttgacatggctttactgactttgt 1884113  T
Q  101 tcaaagcagctacacttcaagggatgaacaatcatgtctttgttgcctatgcttatgctgttgctacttcttttctccttcctatcacnnnnnnnagaag 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||       |||||    
T  1884114 tcaaagcagctacacttcaagggatgaacaatcatgtctttgttgcctatgcttatgctgttgcaacttcttttctccttcctatcactttttttagaag 1884213  T
Q  201 aaggtaagtttgacagaatcacgacgttagaatgaagttttgataaaatcaaaattcgttgatgtttcaacaaaataacgatatgaccttaattttgtca 300  Q
    ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  1884214 aaggtaagtttgacagaatcacgacgttagaataaagttttggtaaaatcaaaattcattgatgtttcaacaaaataacaatatgaccttaattttgtca 1884313  T
Q  301 aactcgcaatgatttcaaacgttatacttatttttattatttttgcagatcaagagtggttcatccactcagtttctccataatatgcaaaattgtgctt 400  Q
    |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1884314 aactcgcaatgatttcaaacattatacttaattttattatttttgcagatcaagagtggttcatccactcagtttctccataatatgcaaaattgtgctt 1884413  T
Q  401 cttggagcgatagggtaattgaaaaatagcattttgttaatataaatttattatatttggtcttcaattttatggttctcatggttttgtttatgttaaa 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1884414 cttggagcgatagggtaattgaaaaatagcattttgttaatataaatttattatatttggtcttcaattttatggttctcatggttttgtttatgttaaa 1884513  T
Q  501 cagatcttcatgtcaaattatggggtatattgctattaattacagttctccaacactttctgcagcaattggtaatcttgtacctgctttcactttcatg 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1884514 cagatcttcatgtcaaattatggggtatattgctattaattacagttctccaacactttctgcagcaattggtaatcttgtacctgctttcactttcatg 1884613  T
Q  601 ttagctgttattttcaggtttgcaaattttattttaatttaacacatttcttacccttatgaacaaatttattttaatacatggtaaacacatttt 696  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  1884614 ttagctgttattttcaggtttgcaaattttattttaatttaacacatttcttacccttatgaataaatttattttaatacatggtaaacacatttt 1884709  T

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Target: chr6; HSP #2
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 449 - 640
Target Start/End: Original strand, 1878511 - 1878703
Alignment:
Q  449 tattatatttggtcttcaattttatggttctcatggttt-tgttt-atgttaaacagatcttcatgtcaaattatggggtatattgctattaattacagt 546  Q
    |||||||||||||| | | |||||||||||| ||||||| ||||| |||||| |||||||||||||||||||||||||||| | |||||||| |||||||    
T  1878511 tattatatttggtcatta-ttttatggttctgatggtttgtgtttcatgttatacagatcttcatgtcaaattatggggtacactgctattagttacagt 1878609  T
Q  547 tctccaacactttctgcagcaattggtaatcttgtacctgctttcactttcatgttagctgttattttcaggtttgcaaattttattttaattt 640  Q
    |||||||||||||||||| |||||||||||||  ||||||||||||||||||| |||||||| | |||||||||||||| |||||||| |||||    
T  1878610 tctccaacactttctgcatcaattggtaatctcatacctgctttcactttcatcttagctgtcactttcaggtttgcaatttttatttgaattt 1878703  T

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Target: chr6; HSP #3
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 77 - 232
Target Start/End: Original strand, 1890734 - 1890889
Alignment:
Q  77 ttgacatggttttactcactttgttcaaagcagctacacttcaagggatgaacaatcatgtctttgttgcctatgcttatgctgttgctacttcttttct 176  Q
    |||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| || ||||    
T  1890734 ttgaaatggctttactcactttgttcaaagcagccacacttcaagggatgaacaatcatgtctttgttgcctatgcttatgctattggtactgctattct 1890833  T
Q  177 ccttcctatcacnnnnnnnagaagaaggtaagtttgacagaatcacgacgttagaa 232  Q
    ||||||||||||       ||||||||||||||||| ||||||||||  |||||||    
T  1890834 ccttcctatcactttttttagaagaaggtaagtttgtcagaatcacggtgttagaa 1890889  T

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Target: chr6; HSP #4
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 1878002 - 1878189
Alignment:
Q  1 catagaaaaatgacaagaaaatgggcctttaaaatggattgtataccaattgtggagattataggcaatgaatgcgttgacatggttttactcactttgt 100  Q
    |||||||| |||||||||| |||| ||||| | ||||||| | |||||||||||| ||||  | ||||||||| |  |||| ||| |||| ||| ||| |    
T  1878002 catagaaagatgacaagaagatggtccttttacatggattttctaccaattgtggtgattgcaagcaatgaattcagtgacgtggctttagtcattttat 1878101  T
Q  101 tcaaagcagctacacttcaagggatgaacaatcatgtctttgttgcctatgcttatgctgttgctacttcttttctccttcctatcac 188  Q
     ||||||||| ||||||||||||||||||||  |||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  1878102 acaaagcagccacacttcaagggatgaacaactatgtttttgttgcctatgcttatgctgttggtacttctgttctccttcctatcac 1878189  T

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Target: chr6; HSP #5
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 57 - 176
Target Start/End: Original strand, 1911020 - 1911139
Alignment:
Q  57 gattataggcaatgaatgcgttgacatggttttactcactttgttcaaagcagctacacttcaagggatgaacaatcatgtctttgttgcctatgcttat 156  Q
    ||||||| || |||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||    
T  1911020 gattatatgctatgaatgtattgacatggctttactcactttgttcaaagcagctacacttcaagggatgaacaatcatgtctttattgcttatgcttat 1911119  T
Q  157 gctgttgctacttcttttct 176  Q
    ||||||| ||||||| ||||    
T  1911120 gctgttggtacttctgttct 1911139  T

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Target: chr6; HSP #6
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 502 - 636
Target Start/End: Original strand, 1912116 - 1912250
Alignment:
Q  502 agatcttcatgtcaaattatggggtatattgctattaattacagttctccaacactttctgcagcaattggtaatcttgtacctgctttcactttcatgt 601  Q
    |||| ||||| ||| ||| |||||||||||  ||||||||  ||||||||||||||| || |||||||||  ||||| |||||||||||||||||||||     
T  1912116 agatgttcatctcagattctggggtatattagtattaattcaagttctccaacacttgcttcagcaattgccaatctggtacctgctttcactttcatgc 1912215  T
Q  602 tagctgttattttcaggtttgcaaattttatttta 636  Q
    ||||||||| ||||||||||||||||| |||||||    
T  1912216 tagctgttactttcaggtttgcaaattatatttta 1912250  T

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Target: chr6; HSP #7
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 521 - 622
Target Start/End: Original strand, 1891600 - 1891701
Alignment:
Q  521 tggggtatattgctattaattacagttctccaacactttctgcagcaattggtaatcttgtacctgctttcactttcatgttagctgttattttcaggtt 620  Q
    |||||||||||| |||||| |||||||||||||||||| || |||||||||||||||| ||||||||||||||||||||  ||||||| |||||||||||    
T  1891600 tggggtatattggtattaactacagttctccaacacttgcttcagcaattggtaatctggtacctgctttcactttcattctagctgtcattttcaggtt 1891699  T
Q  621 tg 622  Q
    ||    
T  1891700 tg 1891701  T

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Target: chr6; HSP #8
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 51 - 163
Target Start/End: Original strand, 1901969 - 1902081
Alignment:
Q  51 tgtggagattataggcaatgaatgcgttgacatggttttactcactttgttcaaagcagctacacttcaagggatgaacaatcatgtctttgttgcctat 150  Q
    ||||| ||||||||||||||||||   |||||||| ||||||||||||||||||||| |  |||||||||||||||||||| ||||||||| |||| |||    
T  1901969 tgtggtgattataggcaatgaatgttctgacatggctttactcactttgttcaaagctgtaacacttcaagggatgaacaaccatgtctttattgcttat 1902068  T
Q  151 gcttatgctgttg 163  Q
    |||||||||||||    
T  1902069 gcttatgctgttg 1902081  T

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Target: chr6; HSP #9
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 338 - 419
Target Start/End: Original strand, 1878346 - 1878427
Alignment:
Q  338 tatttttgcagatcaagagtggttcatccactcagtttctccataatatgcaaaattgtgcttcttggagcgatagggtaat 419  Q
    ||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||| |||||||||||||    
T  1878346 tatttttgcagatcaagagtggttcctccactcagtttttccatattatgcaaaattgtgcttcttggggcgatagggtaat 1878427  T

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Target: chr6; HSP #10
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 77 - 188
Target Start/End: Original strand, 1895584 - 1895695
Alignment:
Q  77 ttgacatggttttactcactttgttcaaagcagctacacttcaagggatgaacaatcatgtctttgttgcctatgcttatgctgttgctacttcttttct 176  Q
    |||| |||| |||||||||||||||||||||||| |||  ||||||||||||||| |||||||||||||| ||| |||||||||||| ||||||| ||||    
T  1895584 ttgaaatggctttactcactttgttcaaagcagccacaaatcaagggatgaacaaccatgtctttgttgcttattcttatgctgttggtacttctgttct 1895683  T
Q  177 ccttcctatcac 188  Q
     |||||| ||||    
T  1895684 tcttcctgtcac 1895695  T

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Target: chr6; HSP #11
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 534 - 623
Target Start/End: Original strand, 1906323 - 1906412
Alignment:
Q  534 tattaattacagttctccaacactttctgcagcaattggtaatcttgtacctgctttcactttcatgttagctgttattttcaggtttgc 623  Q
    |||||| |||||||||||||||||| || ||||||||| |||||| ||||||||||||||||||||| ||||||||| ||||||||||||    
T  1906323 tattaactacagttctccaacacttgcttcagcaattgctaatctggtacctgctttcactttcatgctagctgttactttcaggtttgc 1906412  T

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Target: chr6; HSP #12
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 521 - 623
Target Start/End: Original strand, 1896638 - 1896740
Alignment:
Q  521 tggggtatattgctattaattacagttctccaacactttctgcagcaattggtaatcttgtacctgctttcactttcatgttagctgttattttcaggtt 620  Q
    |||||||||||| ||||||||||||||||||||||||| || ||||| ||| ||||||  |||||||||||||||||||| ||||||| |  ||||||||    
T  1896638 tggggtatattggtattaattacagttctccaacacttgcttcagcacttgctaatctaatacctgctttcactttcatgctagctgtcacattcaggtt 1896737  T
Q  621 tgc 623  Q
    |||    
T  1896738 tgc 1896740  T

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Target: chr6; HSP #13
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 340 - 419
Target Start/End: Original strand, 1905772 - 1905851
Alignment:
Q  340 tttttgcagatcaagagtggttcatccactcagtttctccataatatgcaaaattgtgcttcttggagcgatagggtaat 419  Q
    |||||||||||||||||| |||| ||| ||||||||||| |||||||| |||| |||||||||||| || ||||||||||    
T  1905772 tttttgcagatcaagagttgttcctcctctcagtttctctataatatgtaaaagtgtgcttcttggtgcaatagggtaat 1905851  T

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Target: chr6; HSP #14
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 342 - 419
Target Start/End: Original strand, 1895919 - 1895996
Alignment:
Q  342 tttgcagatcaagagtggttcatccactcagtttctccataatatgcaaaattgtgcttcttggagcgatagggtaat 419  Q
    ||||||| |||| |||||||  ||||||||||||||||||| ||||||||||||| |||||||| || ||||||||||    
T  1895919 tttgcaggtcaatagtggtttctccactcagtttctccatagtatgcaaaattgtacttcttggtgcaatagggtaat 1895996  T

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Target: chr6; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 337 - 433
Target Start/End: Original strand, 1911409 - 1911508
Alignment:
Q  337 ttatttttgcagatcaagagtggt---tcatccactcagtttctccataatatgcaaaattgtgcttcttggagcgatagggtaattgaaaaatagcatt 433  Q
    ||||||||||||||||||||  ||   || |||| ||||||||||||| |||||||||| |||||||||||| || ||||||||| || ||||| |||||    
T  1911409 ttatttttgcagatcaagagctgttcctcctccaatcagtttctccattatatgcaaaagtgtgcttcttggggcaatagggtaagtgcaaaattgcatt 1911508  T

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Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 340 - 419
Target Start/End: Original strand, 1916672 - 1916751
Alignment:
Q  340 tttttgcagatcaagagtggttcatccactcagtttctccataatatgcaaaattgtgcttcttggagcgatagggtaat 419  Q
    ||||| ||||||||||||||||| || |||||||||||||||  |||  |||||||  |||||||| |  ||||||||||    
T  1916672 tttttccagatcaagagtggttcctcaactcagtttctccatcctatttaaaattgctcttcttggggtcatagggtaat 1916751  T

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Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 365 - 419
Target Start/End: Original strand, 1891163 - 1891217
Alignment:
Q  365 ccactcagtttctccataatatgcaaaattgtgcttcttggagcgatagggtaat 419  Q
    ||||| |||||||||| |||||  |||| ||||||||||||||| ||||||||||    
T  1891163 ccactaagtttctccacaatattgaaaagtgtgcttcttggagcaatagggtaat 1891217  T

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Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 540 - 621
Target Start/End: Original strand, 1917223 - 1917304
Alignment:
Q  540 ttacagttctccaacactttctgcagcaattggtaatcttgtacctgctttcactttcatgttagctgttattttcaggttt 621  Q
    |||||||||||| ||||||||  | |||||||| || ||  | |||||||| || |||||||||||||| |||| |||||||    
T  1917223 ttacagttctcctacactttcctctgcaattggaaacctcattcctgcttttaccttcatgttagctgtcatttgcaggttt 1917304  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 44 - 131
Target Start/End: Original strand, 11537490 - 11537577
Alignment:
Q  44 taccaattgtggagattataggcaatgaatgcgttgacatggttttactcactttgttcaaagcagctacacttcaagggatgaacaa 131  Q
    ||||| |||| | |||||||||| |||| ||   |||||||| ||| ||||||||||||||||||||  |||| ||||||||||||||    
T  11537490 taccagttgtagtgattataggctatgagtgatgtgacatgggtttgctcactttgttcaaagcagcaccactgcaagggatgaacaa 11537577  T

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Target: scaffold0103 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 182
Target Start/End: Original strand, 42619 - 42668
Alignment:
Q  133 catgtctttgttgcctatgcttatgctgttgctacttcttttctccttcc 182  Q
    |||||||||||||  |||||||||||||||||| ||| | ||||||||||    
T  42619 catgtctttgttgtttatgcttatgctgttgctgcttttgttctccttcc 42668  T

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