View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17194_low_4 (Length: 364)
Name: NF17194_low_4
Description: NF17194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17194_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 226; Significance: 1e-124; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 1884118 - 1883766
Alignment:
| Q |
1 |
tttgaacaaagtgagtaaagccatgtcaacacattcattgcctataatcaccacaattggtagacaatccatgtaaaaggaccattttcttgtcattttt |
100 |
Q |
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| T |
1884118 |
tttgaacaaagtcagtaaagccatgtcaacacattcattgcctataatcacaacaggtggcagaaaatccatgtaaaaggaccgttttcttgtcatcttt |
1884019 |
T |
|
| Q |
101 |
ctatgtattctaagttttatcccatacacaacaatcacaaaccttgttgaagttcagaatgttgttagatgcttttgatgatgttctgagttggacaatt |
200 |
Q |
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| T |
1884018 |
ctatgtgttctaagttttatcctatatacaacaatcacaaaccttgttgaagttcagaatgttgttagatgcttttgatgaggttttgagttggaccat- |
1883920 |
T |
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| Q |
201 |
gtttaatcaaaaaccaaaataaaagttaaagctgattgtcttaaattaatatatatcaaagacttgcttactattatattgttattagtcatgttac--- |
297 |
Q |
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| T |
1883919 |
-tataatc-aaaaccaaaataaaagttaaagctcattgtcttaaattaatatatatc--acacttgcttactattatattgtttttagtcatgttactca |
1883824 |
T |
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| Q |
298 |
----tcatgatggtgttggcataatatctcaaacattttgttaattagttagtattat |
351 |
Q |
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| T |
1883823 |
tgagtcatgatggtgttggcataatatatcaaacattttgttaattagttagtattat |
1883766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 33 - 160
Target Start/End: Complemental strand, 1878074 - 1877947
Alignment:
| Q |
33 |
attcattgcctataatcaccacaattggtagacaatccatgtaaaaggaccattttcttgtcatttttctatgtattctaagttttatcccatacacaac |
132 |
Q |
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| T |
1878074 |
attcattgcttgcaatcaccacaattggtagaaaatccatgtaaaaggaccatcttcttgtcatctttctatgtgttttaagttctataccttacacaac |
1877975 |
T |
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| Q |
133 |
aatcacaaaccttgttgaagttcagaat |
160 |
Q |
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| T |
1877974 |
aatggcaaaccttgttgaaattcagaat |
1877947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 1902023 - 1901922
Alignment:
| Q |
1 |
tttgaacaaagtgagtaaagccatgtcaacacattcattgcctataatcaccacaattggtagacaatccatgtaaaaggaccattttcttgtcattttt |
100 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| | | ||||||||||| |||||| |||||||||| ||| |
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| T |
1902023 |
tttgaacaaagtgagtaaagccatgtcagaacattcattgcctataatcaccacaggtggcaaaacatccatgtaaagtgaccatcttcttgtcatgttt |
1901924 |
T |
|
| Q |
101 |
ct |
102 |
Q |
| |
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|| |
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| T |
1901923 |
ct |
1901922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 1911068 - 1910913
Alignment:
| Q |
1 |
tttgaacaaagtgagtaaagccatgtcaacacattcattgcctataatcaccacaattggtagacaatccatgtaaaaggaccattttcttgtcattttt |
100 |
Q |
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|
||||||||||||||||||||||||||||| |||||||| || ||||||||| || ||| ||| ||||||||| ||||||||| |||||||||| ||| |
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| T |
1911068 |
tttgaacaaagtgagtaaagccatgtcaatacattcatagcatataatcacagcaggtggcagaacatccatgtacaaggaccatcttcttgtcatgttt |
1910969 |
T |
|
| Q |
101 |
ctatgtattctaagttttatcccatacacaacaatcac-aaaccttgttgaagttc |
155 |
Q |
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|| | ||||| ||| | || |||||||||||||| |||| |||||||||||| |
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| T |
1910968 |
ctgtcacttctatgttctttcagttacacaacaatcacaaaactttgttgaagttc |
1910913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 1890762 - 1890602
Alignment:
| Q |
1 |
tttgaacaaagtgagtaaagccatgtcaacacattcattgcctataatcaccacaattggtagacaatccatgtaaaaggaccattttcttgtcat-ttt |
99 |
Q |
| |
|
|||||||||||||||||||||||| |||| | ||| | ||||| ||||||||| ||| | | |||| |||||||||||||| ||||| |||| ||| |
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| T |
1890762 |
tttgaacaaagtgagtaaagccatttcaatagtttcctgtcctatgatcaccacaggtggcaaaacatccttgtaaaaggaccatcttcttctcatattt |
1890663 |
T |
|
| Q |
100 |
tctatgtattctaagttttatcccatacacaacaatcacaaaccttgttgaagttcagaat |
160 |
Q |
| |
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||| || ||||||||| |||| ||||||||||||||||| || ||||||||||||| |
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| T |
1890662 |
tctctgacttctaagttctatcagttacacaacaatcacaaattctgctgaagttcagaat |
1890602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 1895612 - 1895509
Alignment:
| Q |
1 |
tttgaacaaagtgagtaaagccatgtcaacacattcattgcctataatcaccacaattggtagacaatccatgtaaaaggaccattttcttgtcattttt |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||| | ||| | ||||| ||||| | |||||| | | ||||||||||||||||||| |||||||||| ||| |
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| T |
1895612 |
tttgaacaaagtgagtaaagccatttcaatagtttcctgtcctatgatcactaaaattggcaaaacatccatgtaaaaggaccatcttcttgtcatgttt |
1895513 |
T |
|
| Q |
101 |
ctat |
104 |
Q |
| |
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|||| |
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| T |
1895512 |
ctat |
1895509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 249
Target Start/End: Complemental strand, 1877892 - 1877844
Alignment:
| Q |
202 |
tttaatcaaaaaccaaaataaaagtt-aaagctgattgtcttaaattaa |
249 |
Q |
| |
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||||||||||||||||||| |||||| ||||||| |||||||||||||| |
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| T |
1877892 |
tttaatcaaaaaccaaaatgaaagttaaaagctggttgtcttaaattaa |
1877844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 11537551 - 11537456
Alignment:
| Q |
1 |
tttgaacaaagtgagtaaagccatgtcaacacattcattgcctataatcaccacaattggtagacaatccatgtaaaaggaccattttcttgtcat |
96 |
Q |
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||||||||||||||| ||| |||||||| || |||| |||||||||||| |||| ||||||| |||| |||||||| || ||| ||||| |||| |
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| T |
11537551 |
tttgaacaaagtgagcaaacccatgtcacatcactcatagcctataatcactacaactggtagaaaatctatgtaaaaagatcatcttcttttcat |
11537456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 102
Target Start/End: Complemental strand, 11549184 - 11549123
Alignment:
| Q |
41 |
cctataatcaccacaattggtagacaatccatgtaaaaggaccattttcttgtcatttttct |
102 |
Q |
| |
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||||||||||| |||| |||||| ||||||||||||| |||||| ||||| |||| ||||| |
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| T |
11549184 |
cctataatcactacaaccggtagaaaatccatgtaaaaagaccatcttcttttcatctttct |
11549123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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