View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17194_low_6 (Length: 273)

Name: NF17194_low_6
Description: NF17194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17194_low_6
NF17194_low_6
[»] chr8 (17 HSPs)
chr8 (19-257)||(4889748-4889982)
chr8 (19-163)||(10446820-10446960)
chr8 (16-186)||(4924849-4925015)
chr8 (23-168)||(10452472-10452613)
chr8 (16-170)||(4745803-4745953)
chr8 (16-176)||(4689073-4689229)
chr8 (19-171)||(4776436-4776584)
chr8 (16-170)||(21439303-21439453)
chr8 (37-133)||(4681463-4681559)
chr8 (16-171)||(4726241-4726391)
chr8 (16-163)||(4913378-4913521)
chr8 (24-133)||(4703737-4703846)
chr8 (37-117)||(4996400-4996480)
chr8 (16-133)||(4715094-4715211)
chr8 (26-171)||(4736807-4736947)
chr8 (7-133)||(4875094-4875220)
chr8 (71-135)||(4904413-4904477)


Alignment Details
Target: chr8 (Bit Score: 142; Significance: 1e-74; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 19 - 257
Target Start/End: Complemental strand, 4889982 - 4889748
Alignment:
Q  19 tatctaatttccctttttaagacagagcattcaactcttccacccatcctcgatgccattgagatttataaagtaaaagacttctcacgatcagaaactc 118  Q
    |||| |||||||||   |||||||||| ||||||| |||||||| |||||| ||||| |||||||||||||||||||||||||||||| |||||||||||    
T  4889982 tatcaaatttccctgactaagacagagaattcaacccttccaccaatcctcaatgcctttgagatttataaagtaaaagacttctcacaatcagaaactc 4889883  T
Q  119 aacaagatgatggtatatatgctagccctttagtttatttgaaaaccatactatcttcatccctaaatataaaaatcttttggtatattttcaactgcat 218  Q
    | || ||||||||||  |    ||| |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  4889882 atcaggatgatggtaagt----tagtcctttagtttatatgaaaaccatactatcttcatccctaaatataacaatcttttggtatattttcaactgcat 4889787  T
Q  219 tctataataatcactacgatgaaaacataaactaattct 257  Q
    ||||||| ||  |||||||||||||||||||||||||||    
T  4889786 tctataacaacgactacgatgaaaacataaactaattct 4889748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 163
Target Start/End: Original strand, 10446820 - 10446960
Alignment:
Q  19 tatctaatttccctttttaagacagagcattcaactcttccacccatcctcgatgccattgagatttataaagtaaaagacttctcacgatcagaaactc 118  Q
    |||| |||||||||||| |||| |||| ||||||| |||||||| ||| || |||||||||| |||||||||||||||||||||||||   ||||||||     
T  10446820 tatccaatttcccttttcaagatagagaattcaacccttccaccaatcgtcaatgccattgaaatttataaagtaaaagacttctcacagccagaaacta 10446919  T
Q  119 aacaagatgatggtatatatgctagccctttagtttatttgaaaa 163  Q
    |||||||||||||||     || ||||||||||||||||||||||    
T  10446920 aacaagatgatggtaa----gcaagccctttagtttatttgaaaa 10446960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 186
Target Start/End: Complemental strand, 4925015 - 4924849
Alignment:
Q  16 aggtatctaatttccctttttaagacagagcattcaactcttccacccatcctcgatgccattgagatttataaagtaaaagacttctcacgatcagaaa 115  Q
    ||||||| | |||||||| ||||||||||| ||||||| ||||||||||||||| |||||  |||| |||||||||||||| | |||| || | ||||||    
T  4925015 aggtatcaattttcccttattaagacagagaattcaacccttccacccatcctcaatgcctatgaggtttataaagtaaaacaattcttacaaccagaaa 4924916  T
Q  116 ctcaacaagatgatggtatatatgctagccctttagtttatttgaaaaccatactatcttcatccctaaat 186  Q
    ||||||||||||||||    || ||||||||| |||||||| | || | |||||||||| | |||||||||    
T  4924915 ctcaacaagatgatgg----taagctagccctctagtttatctcaacaacatactatctacgtccctaaat 4924849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 23 - 168
Target Start/End: Original strand, 10452472 - 10452613
Alignment:
Q  23 taatttccctttttaagacagagcattcaactcttccacccatcctcgatgccattgagatttataaagtaaaagacttctcacgatcagaaactcaaca 122  Q
    ||||||||||||| || | |||| ||||||| ||||||||||||||| |||||||| | ||||||||||||||||||||||||  | |||||||  ||||    
T  10452472 taatttcccttttcaaaatagagaattcaacccttccacccatcctcaatgccattaaaatttataaagtaaaagacttctcaaaaccagaaacagaaca 10452571  T
Q  123 agatgatggtatatatgctagccctttagtttatttgaaaaccata 168  Q
    |||||||||||  ||    |||||||||||||||||||||| ||||    
T  10452572 agatgatggtaagta----agccctttagtttatttgaaaaacata 10452613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 16 - 170
Target Start/End: Original strand, 4745803 - 4745953
Alignment:
Q  16 aggtatctaatttccctttttaagacagagcattcaactcttccacccatcctcgatgccattgagatttataaagtaaaagacttctcacgatcagaaa 115  Q
    ||||||| ||||||||| | |||||||||| ||||||| |||||||| |||||| |||||  |||| ||||| |  ||| ||||||||||  ||||||||    
T  4745803 aggtatcaaatttccctctataagacagagaattcaacccttccaccaatcctcaatgcctatgaggtttattagctaagagacttctcaaaatcagaaa 4745902  T
Q  116 ctcaacaagatgatggtatatatgctagccctttagtttatttgaaaaccatact 170  Q
    |||||||||||||||    ||| |||||||| |||||||||||||||| ||||||    
T  4745903 ctcaacaagatgatg----ataagctagcccattagtttatttgaaaaacatact 4745953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 176
Target Start/End: Original strand, 4689073 - 4689229
Alignment:
Q  16 aggtatctaatttccctttttaagacagagcattcaactcttccacccatcctcgatgccattgagatttataaagtaaaagacttctcacgatcagaaa 115  Q
    ||||||||| |||||||||| ||||| ||  ||||||| |||||||| |||||| |||||  |||| ||||||||||||  |||||| ||| ||||||||    
T  4689073 aggtatctattttcccttttaaagacggaaaattcaacccttccaccaatcctcaatgcctatgaggtttataaagtaatggacttcccacaatcagaaa 4689172  T
Q  116 ctcaacaagatgatggtatatatgctagccctttagtttatttgaaaaccatactatcttc 176  Q
    || |||||||||||||    || || | |||||||||||||||||||| ||||||| ||||    
T  4689173 ctgaacaagatgatgg----taagcaatccctttagtttatttgaaaaacatactaccttc 4689229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 171
Target Start/End: Complemental strand, 4776584 - 4776436
Alignment:
Q  19 tatctaatttccctttttaagacagagcattcaactcttccacccatcctcgatgccattgagatttataaagtaaaagacttctcacgatcagaaactc 118  Q
    |||| |||||| ||||  |||||| || ||||||| ||||||||||||||  ||||| ||||||||||||  | |||||||||||||| || ||||||||    
T  4776584 tatcaaatttctctttccaagacaaagaattcaacccttccacccatcctaaatgcctttgagatttatatggcaaaagacttctcacaattagaaactc 4776485  T
Q  119 aacaagatgatggtatatatgctagccctttagtttatttgaaaaccatacta 171  Q
    |||| ||||||||||     |||||  |||||||||||||||||| |||||||    
T  4776484 aacaggatgatggtaa----gctaggactttagtttatttgaaaaacatacta 4776436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 170
Target Start/End: Complemental strand, 21439453 - 21439303
Alignment:
Q  16 aggtatctaatttccctttttaagacagagcattcaactcttccacccatcctcgatgccattgagatttataaagtaaaagacttctcacgatcagaaa 115  Q
    ||||||| |||||| |||| || |||| || ||||||| ||||||||||||||  ||||  ||||||||||||  | ||||| |||||||| ||||||||    
T  21439453 aggtatcaaatttctctttctaggacacagaattcaacccttccacccatcctaaatgcatttgagatttatatgggaaaagtcttctcacaatcagaaa 21439354  T
Q  116 ctcaacaagatgatggtatatatgctagccctttagtttatttgaaaaccatact 170  Q
    ||||||| ||||||||||     ||| || |||||||||||||||||| ||||||    
T  21439353 ctcaacaggatgatggtaa----gctggctctttagtttatttgaaaaacatact 21439303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 133
Target Start/End: Original strand, 4681463 - 4681559
Alignment:
Q  37 aagacagagcattcaactcttccacccatcctcgatgccattgagatttataaagtaaaagacttctcacgatcagaaactcaacaagatgatggta 133  Q
    ||||||||  ||||||| ||||||||||||||  ||||| ||||| |||||||||||||| | ||||||| ||||||||||||||| ||||||||||    
T  4681463 aagacagataattcaacccttccacccatcctgaatgccgttgaggtttataaagtaaaaaatttctcacaatcagaaactcaacaggatgatggta 4681559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 171
Target Start/End: Original strand, 4726241 - 4726391
Alignment:
Q  16 aggtatctaatttccctttttaagacagagcattcaactcttccacccatcctcgatgccattgagatttataaagtaaaagacttctcacgatcagaaa 115  Q
    ||||||| | |||||||||||||||||||  | ||||| |||||||| |||||| ||||| ||||| | |||||| ||||||||||||| |  |||||||    
T  4726241 aggtatcaagtttccctttttaagacagaaaagtcaacccttccaccaatcctcaatgcctttgaggtatataaactaaaagacttctcgcattcagaaa 4726340  T
Q  116 ctcaacaagatgatggtatatatgctagccctttagtttatttgaaaaccatacta 171  Q
    ||||||| | ||||||    || ||||||||||| ||||| ||||||| |||||||    
T  4726341 ctcaacagggtgatgg----taagctagcccttt-gtttaattgaaaaacatacta 4726391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 163
Target Start/End: Complemental strand, 4913521 - 4913378
Alignment:
Q  16 aggtatctaatttccctttttaagacagagcattcaactcttccacccatcctcgatgccattgagatttataaagtaaaagacttctcacgatcagaaa 115  Q
    ||||||| |||||| ||||  |||||| || ||||||| ||||||||||||||  ||||| |||||||||| |    |||||||||||||| ||||||||    
T  4913521 aggtatcaaatttctctttccaagacaaagaattcaacccttccacccatcctaaatgcctttgagatttacatgtcaaaagacttctcacaatcagaaa 4913422  T
Q  116 ctcaacaagatgatggtatatatgctagccctttagtttatttgaaaa 163  Q
    ||||||| ||||||||||     ||| |||||||||||||| ||||||    
T  4913421 ctcaacaggatgatggtaa----gctggccctttagtttatctgaaaa 4913378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 24 - 133
Target Start/End: Original strand, 4703737 - 4703846
Alignment:
Q  24 aatttccctttttaagacagagcattcaactcttccacccatcctcgatgccattgagatttataaagtaaaagacttctcacgatcagaaactcaacaa 123  Q
    ||||||||| |||||||||||  ||||||| |||||||||||     |||| |||||| ||||||||||||||||||||||||  ||||||||||| ||     
T  4703737 aatttccctctttaagacagataattcaacccttccacccatagctaatgctattgaggtttataaagtaaaagacttctcacagtcagaaactcatcag 4703836  T
Q  124 gatgatggta 133  Q
    ||||||||||    
T  4703837 gatgatggta 4703846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 37 - 117
Target Start/End: Original strand, 4996400 - 4996480
Alignment:
Q  37 aagacagagcattcaactcttccacccatcctcgatgccattgagatttataaagtaaaagacttctcacgatcagaaact 117  Q
    ||||||||| ||||||| |||||||| |||||| ||||| |||| ||||||||||||||| ||||||||| ||||||||||    
T  4996400 aagacagaggattcaacccttccaccaatcctcaatgcctttgaaatttataaagtaaaaaacttctcacaatcagaaact 4996480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 16 - 133
Target Start/End: Original strand, 4715094 - 4715211
Alignment:
Q  16 aggtatctaatttccctttttaagacagagcattcaactcttccacccatcctcgatgccattgagatttataaagtaaaagacttctcacgatcagaaa 115  Q
    ||||||||| ||||||||| |||||||||| ||||||| |||||||| |||||| |||||  |||| ||||||||||||||   ||||| | ||  ||||    
T  4715094 aggtatctattttccctttctaagacagagaattcaacccttccaccaatcctcaatgcctatgaggtttataaagtaaaacttttctcgcaattggaaa 4715193  T
Q  116 ctcaacaagatgatggta 133  Q
    |||| || ||||||||||    
T  4715194 ctcatcaggatgatggta 4715211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 26 - 171
Target Start/End: Original strand, 4736807 - 4736947
Alignment:
Q  26 tttccctttttaagacagagcattcaactcttccacccatcctcgatgccattgagatttataaagtaaaagacttctcacgatcagaaactcaacaaga 125  Q
    |||||||||  |||| |||  ||||||| ||||||||||||||  ||||  ||||| ||||||||  || ||||||||||  ||||||||||||||||||    
T  4736807 tttccctttcgaagaaagataattcaacccttccacccatcctgaatgcttttgaggtttataaacaaagagacttctcaatatcagaaactcaacaaga 4736906  T
Q  126 tgatggtatatatgctagccctttagtttatttgaaaaccatacta 171  Q
    ||||||    || ||||||||||| ||||| ||||||| |||||||    
T  4736907 tgatgg----taagctagcccttt-gtttaattgaaaaacatacta 4736947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 133
Target Start/End: Complemental strand, 4875220 - 4875094
Alignment:
Q  7 ggagcagagaggtatctaatttccctttttaagacagagcattcaactcttccacccatcctcgatgccattgagatttataaagtaaaagacttctcac 106  Q
    |||||| | ||||||  |||||||||||||| ||||||| ||||||| |||||||| |||||  ||||| ||||| |||||||| |||| ||| | |||     
T  4875220 ggagcaaaaaggtataaaatttccctttttaggacagaggattcaacccttccaccgatcctgaatgcctttgagttttataaactaaatgacatttcag 4875121  T
Q  107 gatcagaaactcaacaagatgatggta 133  Q
    |||  || | || ||||||||||||||    
T  4875120 gatttgatagtctacaagatgatggta 4875094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 135
Target Start/End: Complemental strand, 4904477 - 4904413
Alignment:
Q  71 atgccattgagatttataaagtaaaagacttctcacgatcagaaactcaacaagatgatggtata 135  Q
    ||||| |||||||||| || | ||||||||||  || |||||||||| | |||||||||||||||    
T  4904477 atgcctttgagatttacaaggcaaaagacttcatacaatcagaaactgatcaagatgatggtata 4904413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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