View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17195_high_10 (Length: 507)
Name: NF17195_high_10
Description: NF17195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17195_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 15 - 488
Target Start/End: Original strand, 37629405 - 37629883
Alignment:
| Q |
15 |
aaaggggtacctaaaaaaggctttgtatggatcaaagggaccaacttttggaaccaaggttgcaaactaccctccatgcccaaaaccagaccttgtaaag |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37629405 |
aaaggggtacctaaaaaaggctttgtatggatcaaagggaccaacttttggaaccaaggttgcaaactaccctccatgcccaaaaccagaccttgtaaag |
37629504 |
T |
|
| Q |
115 |
ggtctccgtgcacacaccgatgccggtggaatcatccttcttttccaagatgacatggtcagtggccttcagcttctcaaagatggtaactgggtagatg |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37629505 |
ggtctccgtgcacacaccgatgccggtggaatcatccttcttttccaagatgacaaggtcagtggccttcagcttctcaaagatggtaactgggtagatg |
37629604 |
T |
|
| Q |
215 |
tccctcccatgcatcattccattgtcatcaaccttggtgaccaacttgaggt--nnnnnnnnncattcttctaaatttatattaacatttttacaaacat |
312 |
Q |
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| T |
37629605 |
tccctcccatgcatcattccattgtcatcaaccttggtgaccaacttgaggtaaaaaaaaaaacattcttctaaatttatattgacatttttacaaac-- |
37629702 |
T |
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| Q |
313 |
ataaaatcaacaacaaatgattcatatcaagcattaa-----nnnnnnnnnnnnnnaatgtgacaggtaataacaaatggtaagtacaaaagtgtggaac |
407 |
Q |
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| T |
37629703 |
ataaaatcaacaacaaatgattcatatcaagcattaattttttattttttatttttaatgtgacaggtaataacaaatggcaagtacaaaagtgtggaac |
37629802 |
T |
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| Q |
408 |
accgtgtggtagcacaaactgatggaacaagaatgtctatagcctcattctacaaccctggtagtgatgctgttatctacc |
488 |
Q |
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| T |
37629803 |
accgtgtggtagcacaaactgatggaacaagaatgtctatagcctcattctacaaccctggtagtgatgctgttatctacc |
37629883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 93; Significance: 5e-45; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 22 - 266
Target Start/End: Complemental strand, 36872135 - 36871891
Alignment:
| Q |
22 |
tacctaaaaaaggctttgtatggatcaaagggaccaacttttggaaccaaggttgcaaactaccctccatgcccaaaaccagaccttgtaaagggtctcc |
121 |
Q |
| |
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||||| |||||||| || |||||||||| |||||||||||||| ||||| || || |||||||||| ||||||||| ||||| || || |||||||| | |
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| T |
36872135 |
taccttaaaaaggcattttatggatcaagaggaccaacttttggcaccaaagtagccaactaccctcaatgcccaaatccagagctggtgaagggtcttc |
36872036 |
T |
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| Q |
122 |
gtgcacacaccgatgccggtggaatcatccttcttttccaagatgacatggtcagtggccttcagcttctcaaagatggtaactgggtagatgtccctcc |
221 |
Q |
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| T |
36872035 |
gtgctcacaccgatgccggaggaatcatccttctcttccaggatgataaggtcagtggcctacaattgctcaaagatggccagtgggttgatgttccccc |
36871936 |
T |
|
| Q |
222 |
catgcatcattccattgtcatcaaccttggtgaccaacttgaggt |
266 |
Q |
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| T |
36871935 |
aatgcgccactccatcgttgtcaaccttggtgaccaacttgaggt |
36871891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 370 - 480
Target Start/End: Complemental strand, 36871303 - 36871193
Alignment:
| Q |
370 |
acaggtaataacaaatggtaagtacaaaagtgtggaacaccgtgtggtagcacaaactgatggaacaagaatgtctatagcctcattctacaaccctggt |
469 |
Q |
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|||||||||||||||||| |||||||| |||||||||||||||||| |||||||||| |||||||||||||||| ||||| ||||||||||||||||| |
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| T |
36871303 |
acaggtaataacaaatggcaagtacaagagtgtggaacaccgtgtgatagcacaaacaaatggaacaagaatgtccatagcatcattctacaaccctggg |
36871204 |
T |
|
| Q |
470 |
agtgatgctgt |
480 |
Q |
| |
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||||||||||| |
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| T |
36871203 |
agtgatgctgt |
36871193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 124 - 266
Target Start/End: Original strand, 8926970 - 8927112
Alignment:
| Q |
124 |
gcacacaccgatgccggtggaatcatccttcttttccaagatgacatggtcagtggccttcagcttctcaaagatggtaactgggtagatgtccctccca |
223 |
Q |
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|||||||| ||||| ||||| ||||||||||| ||||||||||||| |||||||| ||||||||||||||||||| | ||| | ||||||||||| | |
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| T |
8926970 |
gcacacacagatgctggtggcatcatccttctcttccaagatgacaaagtcagtggacttcagcttctcaaagatgaccaatggattgatgtccctccaa |
8927069 |
T |
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| Q |
224 |
tgcatcattccattgtcatcaaccttggtgaccaacttgaggt |
266 |
Q |
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||| ||| || |||||||||||||||||||||||||||||||| |
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| T |
8927070 |
tgcctcactctattgtcatcaaccttggtgaccaacttgaggt |
8927112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 157 - 266
Target Start/End: Original strand, 55528092 - 55528201
Alignment:
| Q |
157 |
ttccaagatgacatggtcagtggccttcagcttctcaaagatggtaactgggtagatgtccctcccatgcatcattccattgtcatcaaccttggtgacc |
256 |
Q |
| |
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||||||||||||| ||| | || |||||||| || |||||||| | ||| | |||||||| || |||| ||||||||||| |||||||||||||||| |
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| T |
55528092 |
ttccaagatgacaaggttggcggacttcagctccttaaagatggccaatggattgatgtcccaccaatgcgccattccattgttatcaaccttggtgacc |
55528191 |
T |
|
| Q |
257 |
aacttgaggt |
266 |
Q |
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|| ||||||| |
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| T |
55528192 |
aaattgaggt |
55528201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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