View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17195_high_30 (Length: 239)
Name: NF17195_high_30
Description: NF17195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17195_high_30 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 2 - 239
Target Start/End: Original strand, 39610722 - 39610956
Alignment:
| Q |
2 |
aaaatgtgaactcgttttaggtggccaaggccaactccattaattatattactgtcaccaactagcaaattaaattgatattttatagggaaagtaacat |
101 |
Q |
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| T |
39610722 |
aaaatgtgaactcgttttaggtggc---ggccaactccattaattatattactctcaccaactagcaagttaaattgatactttatagggaaagtaacat |
39610818 |
T |
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| Q |
102 |
ggggttacagccaggatcaagaggactaccctttaacctcagttttgtttgtttgtgttgactatatatatattcagatgaagagtagagactctataag |
201 |
Q |
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| T |
39610819 |
gggcttacagccaggatcaggaggactacccttcaacctcagttttgtttgtttgtgttggctatatatattttcagatgaagagtagagactctataag |
39610918 |
T |
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| Q |
202 |
aatgaagtgaactacccacccaagagtgttaacaatcc |
239 |
Q |
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| T |
39610919 |
aatgaagtgaactacccacccaagagtgttaacaatcc |
39610956 |
T |
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