View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17195_high_31 (Length: 238)
Name: NF17195_high_31
Description: NF17195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17195_high_31 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 39611421 - 39611202
Alignment:
| Q |
19 |
gaaccatgttaattttgtaaaacggtggatcaagttattttaacaaatctacaatataccaaacatgaattttaaggtaaggaacaaaaggtgtaaaaac |
118 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39611421 |
gaaccatgttaattttgtaaaatggtggatcaagttattttaacaaatctacaatataccaaacatgaattttaaggtaaggaacaaaaggtgtaaaaac |
39611322 |
T |
|
| Q |
119 |
aagaactagaaaagcatgacatggggtcaagatgtttaaccataaagggtatagtctccatctttaataacaggaacatttccaaatggctgcagattat |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39611321 |
aagaactagaaaagcatgacatggggtcaagatgtttaaccataaagggtatagtctccatctttaataacaggaacatttccaaatggctgcagattat |
39611222 |
T |
|
| Q |
219 |
gaacaaagtacatgagtgtt |
238 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
39611221 |
gaacaaagtacatgagtgtt |
39611202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 113 - 225
Target Start/End: Complemental strand, 39600893 - 39600779
Alignment:
| Q |
113 |
aaaaacaagaactagaaaa-gcatgacatggggtcaagatgttt-aaccataaagggtatagtctccatctttaataacaggaacatttccaaatggctg |
210 |
Q |
| |
|
||||||||||| ||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||| ||||||| ||||| |
|
|
| T |
39600893 |
aaaaacaagaagtagaaaaagtatgacatggggtcaagatgttttaaccataaagggtatagtctccatcttttattacaggaacagttccaaaaggctg |
39600794 |
T |
|
| Q |
211 |
cagattatgaacaaa |
225 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
39600793 |
cagattatgaacaaa |
39600779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University