View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17195_high_33 (Length: 235)
Name: NF17195_high_33
Description: NF17195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17195_high_33 |
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Alignment Details
Target: chr5 (Bit Score: 84; Significance: 5e-40; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 20830829 - 20830916
Alignment:
| Q |
1 |
ataagatatccaacatattcccccattaaattagatcaaaattagataattatattaaatttcattttgatatttatgcaagtcattt |
88 |
Q |
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| T |
20830829 |
ataagatatccaacatattcccccattaaattagatcaaaattaaataattatattaaatttcattttgatatttatgcaagtcattt |
20830916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 20809130 - 20809234
Alignment:
| Q |
1 |
ataagatatccaacatattcccccattaaattagatcaaaattagataattatattaaatttcattttgatatttatgcaagtcatttattttcattatc |
100 |
Q |
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| T |
20809130 |
ataagatatccaacatattcccccattaaattagatcaaaattaaataattatattaaatttcattttga--------caagtcatttattttcattatc |
20809221 |
T |
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| Q |
101 |
ctaattccttacc |
113 |
Q |
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| T |
20809222 |
ctaattccttacc |
20809234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 146 - 221
Target Start/End: Original strand, 20809236 - 20809310
Alignment:
| Q |
146 |
atgcaaaatgttagccacacattttgtttctcaacagactccatttggtcaacgtgagtcgtcgggacaacattac |
221 |
Q |
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|||||||||||||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
20809236 |
atgcaaaatgttagccacacattt-gtatctcaacagactccagttggtcaacgtgagtcgtcgggacaacattac |
20809310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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