View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17195_high_4 (Length: 641)

Name: NF17195_high_4
Description: NF17195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17195_high_4
NF17195_high_4
[»] chr7 (1 HSPs)
chr7 (14-637)||(10712354-10712973)


Alignment Details
Target: chr7 (Bit Score: 480; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 14 - 637
Target Start/End: Original strand, 10712354 - 10712973
Alignment:
Q  14 cctgtggaattgggggcatcgatccaataatgatcctacatatttgttgatgtgacnnnnnnnntagtgttgacacta--attcttgcttcaagcttaat 111  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||  ||||||||||||||||||||    
T  10712354 cctgaggaattcggggcatcgatccaataatgatcctacatatttgttgatgtgacgaaaaaa-tagtgttgacactataattcttgcttcaagcttaat 10712452  T
Q  112 atatattatacatagatagatgggttctgcaggtgtaaaatcaaacataaatgacatttgaatgttaagctcttcaatcaattttattaattctctcaac 211  Q
    ||||||||||||||  ||||||||||||||||| ||||  |||||| | |||||||||| |||||| |||||||| |||||||| ||||||| |||||||    
T  10712453 atatattatacata--tagatgggttctgcaggcgtaa--tcaaacgtgaatgacatttcaatgttcagctcttccatcaatttaattaattttctcaac 10712548  T
Q  212 tactcaacatttgaatttcaataataaaaattcaaatgataatgcacgaagtattattccaactcaaatcatgtataccattttacaattttacatacaa 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  10712549 tactcaacatttgaatttcaataataaaaattcaaatgataatgcacgaagtattattccaactcaaatcatgtataccattt-acaattttacatacaa 10712647  T
Q  312 acagcaaatctcagattcatttaaccctcatgctttagaaattgaggggttgtggtgcagattacaagagaattttcctgtcagcaatatgcatacagtc 411  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  10712648 acagaaaatctcagattcatttaaccctcatgctttagaaattgaggggttgtggtgcagattacaagagaattttcctgtcagcaatatgcatacagac 10712747  T
Q  412 ttgaatctgcaggtgaaagaagcaatttgacaaagaacaaccactgaaatttgtggaccctgtcattgaaaagttagaaaaattagcattcaatgattta 511  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||    
T  10712748 ttgaatctgcaggtgaaagatgcaatttgacaaagaacaaccactgaaatttgtggaccctgtcatggtaaagttagaaaaattagcattcaacgattta 10712847  T
Q  512 aatttgggaaaggttgatactttatcaaataaagggaatgtcacaatgccattatcccttctagcaatagagttaaaaacacgatattctcgttgggatg 611  Q
    | ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10712848 actttgggaaaggttgatacttcgtcaaataaagggaatgtcacaatgccattatcccttctagcaatagagttaaaaacacgatattctcgttgggatg 10712947  T
Q  612 tctaaaaatatagctatcatattttg 637  Q
    ||||||||||||||||||||||||||    
T  10712948 tctaaaaatatagctatcatattttg 10712973  T

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