View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17195_high_7 (Length: 549)
Name: NF17195_high_7
Description: NF17195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17195_high_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 486; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 14 - 534
Target Start/End: Original strand, 1615352 - 1615870
Alignment:
| Q |
14 |
atgatcaaaaatgaaatcataacaacaaaaataaatacgtggagggaaaagaaacctgtccaattttcatcttctcgtcaaagcatcactcttcatcatc |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
1615352 |
atgatcaaaaatgaaatcataacaacaaaaataaatacgtggagggaaaagaaacctgtccaattttcatcttctcatcaaagcatcactcttcatcatc |
1615451 |
T |
|
| Q |
114 |
ttcagcgtatgaattcaaacctagccacaccaccatccatacaataagggggaaaaaataacataagattgcaacctgcaactacagtgactgtgacatc |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
1615452 |
ttcagcgtatgaattcaaacctagccacaccaccatccataaaataagggggaaaaaataacataagattgcaacctgcaaccacagtgactgtgacatc |
1615551 |
T |
|
| Q |
214 |
aagtaagattttttcccatcaaacagtacttgattgtgatactctgcttcatgctatgttggtggtgttaaatttgtttaaaatagaaaactaaactgtt |
313 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1615552 |
--gtaagattttttcccatcaaacaatacttgattttgatactctgcttcatgctatgttggtggtgttaaatttgtttaaaatagaaaactaaactgtt |
1615649 |
T |
|
| Q |
314 |
agaagaaccaaaaagcaagataattcaatacaaacaaccaacataaatataatttaaaaataatttttctgaactatagaacttgcagaccagagcaatt |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
1615650 |
agaagaaccaaaaagcaagataattcaatacaaacaaccaacataaatataatttaaaaataatttttctgaactatagaacttgcagaccagagcaaat |
1615749 |
T |
|
| Q |
414 |
agtagaataaaagccgctaagctgcaactggattaagtggagacgaatcaaaacccaagaaaaaaccatttaggtgtatatttacactataagctatatt |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1615750 |
agtagaataaaagccgctaagctgcaactggattaagtggagacgaatcaaaacccaagaaaaaaccatttaggtgtatatttacactataagctatatt |
1615849 |
T |
|
| Q |
514 |
ggaatttggtgtataggaaat |
534 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
1615850 |
ggaatttggtgtataggaaat |
1615870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 20 - 312
Target Start/End: Complemental strand, 24455331 - 24455046
Alignment:
| Q |
20 |
aaaaatgaaatcataacaacaaaaataaatacgtggagggaaaagaaacctgtccaattttcatcttctcgtcaaagcatcactcttcatcatcttcagc |
119 |
Q |
| |
|
||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
24455331 |
aaaaacgaaatcataacaacaaaaagaaatatgtggagggaaaagaaacctgtccaaatttcatcttctcataaaagcatcactcttcatcatcttcagc |
24455232 |
T |
|
| Q |
120 |
gtatgaa-ttcaaacctagccacaccaccatccatacaataagg--gggaaaaaataacataagattgcaacctgcaactacagtgactgtgacatcaag |
216 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||| |||| || | |||||| ||||||||||||||||||||||| |||| | ||| |
|
|
| T |
24455231 |
gtatgaatttcaaatctagccacaccaccatccataaaatacggaagaaaaaaaaaaacataagattgcaacctgcaaccacag-----------taaag |
24455143 |
T |
|
| Q |
217 |
taagattttttcccatcaaacagtacttgattgtgatact-ctgcttcatgctatgttggtggtgttaaatttgtttaaaatagaaaactaaactgt |
312 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24455142 |
taagattttttcccatcaaacaaaacttgattttgatactcctgcttcatcctatgttggtggtgttaaatttgtttaaaatagaaaactaaactgt |
24455046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 4e-24; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 91 - 179
Target Start/End: Complemental strand, 43227489 - 43227403
Alignment:
| Q |
91 |
tcaaagcatcactcttcatcatcttcagcgtatgaattcaaacctagccacaccaccatccatacaataagggggaaaaaataacataa |
179 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||| |
|
|
| T |
43227489 |
tcaaagcatcactctttgtcatcttcaacgtatgaattcaaacctagccacaccaccatccataaaataa--ggaaaaaaataacataa |
43227403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 495 - 534
Target Start/End: Original strand, 27541475 - 27541514
Alignment:
| Q |
495 |
ttacactataagctatattggaatttggtgtataggaaat |
534 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
27541475 |
ttacactataagctatatgggaatttggtgcataggaaat |
27541514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 80 - 161
Target Start/End: Original strand, 48909245 - 48909326
Alignment:
| Q |
80 |
tcatcttctcgtcaaagcatcactcttcatcatcttcagcgtatgaattcaaacctagccacaccaccatccatacaataag |
161 |
Q |
| |
|
|||||||||| ||||||| ||||||| ||||||||||| | | |||| |||| |||||| | ||||||||||||| |||||| |
|
|
| T |
48909245 |
tcatcttctcatcaaagcctcactctccatcatcttcaacatttgaactcaagcctagcaagaccaccatccataaaataag |
48909326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 84 - 151
Target Start/End: Original strand, 35361052 - 35361119
Alignment:
| Q |
84 |
cttctcgtcaaagcatcactcttcatcatcttcagcgtatgaattcaaacctagccacaccaccatcc |
151 |
Q |
| |
|
|||||| |||||| ||||||||||||||||||| | |||||| ||||| |||||||||||||||| |
|
|
| T |
35361052 |
cttctcatcaaagtctcactcttcatcatcttcaacctatgaactcaaatagagccacaccaccatcc |
35361119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University