View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17195_high_8 (Length: 521)
Name: NF17195_high_8
Description: NF17195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17195_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 494; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 1 - 510
Target Start/End: Original strand, 3446506 - 3447015
Alignment:
| Q |
1 |
acccaggatggttccatccatcgtgcccggctatatctaccggagaaaacacccgaggacaataaaaaactaccaatactcctccattttcaaggtggag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3446506 |
acccaggatggttccatccatcgtgcccggctatatctaccggagaaaacacccgaggacaataaaaaactaccaatactcctccattttcaaggtggag |
3446605 |
T |
|
| Q |
101 |
gtttctgcattagtgaaacaaattggttcatgtactaccatgtctacaccgagctagtccggtccactcgatccatttgtgtctctccgtacatacggag |
200 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
3446606 |
gtttctgcattagtgaaccaaattggttcatgtactaccatgtctacaccgagctagtccggtccactcgatccatttgtgtctctccgtacctacggag |
3446705 |
T |
|
| Q |
201 |
agctcctgagcaccgtcttcctgctgccattgatgacgggtttgctacgctccaatggcttcaatcagtggccaagggagacgtacgtgacccgtggctt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3446706 |
agctcctgagcaccgtcttcctgctgccattgatgatgggtttgctacgctccaatggcttcaatcagtggccaagggagacgtacgtgacccgtggctt |
3446805 |
T |
|
| Q |
301 |
gaggaacatggtgactttgacaaaattttcctcataggagatagttctggaggaaacatagtccatgaagtggcagctagagccggttcggttgacctga |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
3446806 |
gaggaacatggtgactttgacaaaattttcctcataggagatagttctggaggaaacatagtccatgaagtggcagctagagctggttcggttgacctga |
3446905 |
T |
|
| Q |
401 |
ccccagttcggcttgcaggagcaattcccatccatcctgggtttgtcaggtcataccgaagccggtctgaaattgaaatgccacaatcaccatttctaac |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3446906 |
ccccagttcggcttgcaggagcaattcccatccatcctgggtttgtcaggtcataccgaagccggtctgaaattgaaatgccacaatcaccatttctaac |
3447005 |
T |
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| Q |
501 |
attggatatg |
510 |
Q |
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| T |
3447006 |
attggatatg |
3447015 |
T |
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