View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17195_low_1 (Length: 783)

Name: NF17195_low_1
Description: NF17195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17195_low_1
NF17195_low_1
[»] chr1 (5 HSPs)
chr1 (15-512)||(1390281-1390752)
chr1 (580-675)||(1390128-1390223)
chr1 (304-400)||(21859717-21859813)
chr1 (716-765)||(1390082-1390131)
chr1 (305-400)||(22916284-22916379)
[»] chr6 (3 HSPs)
chr6 (237-400)||(33596362-33596524)
chr6 (304-400)||(14958902-14958998)
chr6 (303-401)||(8877825-8877922)
[»] chr7 (1 HSPs)
chr7 (304-400)||(48629425-48629521)
[»] scaffold0186 (1 HSPs)
scaffold0186 (303-401)||(2723-2821)
[»] chr4 (3 HSPs)
chr4 (305-391)||(4103226-4103312)
chr4 (67-131)||(52477314-52477378)
chr4 (79-141)||(2302234-2302296)
[»] chr3 (2 HSPs)
chr3 (305-401)||(27437912-27438010)
chr3 (303-401)||(9775128-9775225)
[»] chr2 (2 HSPs)
chr2 (321-400)||(27513752-27513831)
chr2 (716-762)||(4747694-4747740)
[»] chr8 (2 HSPs)
chr8 (321-400)||(15327849-15327928)
chr8 (321-400)||(15508218-15508297)
[»] scaffold0131 (1 HSPs)
scaffold0131 (309-378)||(10296-10365)
[»] scaffold0003 (1 HSPs)
scaffold0003 (309-397)||(111003-111091)


Alignment Details
Target: chr1 (Bit Score: 381; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 15 - 512
Target Start/End: Complemental strand, 1390752 - 1390281
Alignment:
Q  15 cagagattatcgcaggttagggtttgggagtgagaagaatctgaatcaagaagagtgtgtaggttaggttgggagtgtgagagcgagtgtgtgtgaaggc 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||    
T  1390752 cagagattatcgcaggttagggtttgggagtgagaagaatctgaatcaaga---gtgtgtaggttaggttgggagtgtgagagcgagtgtgtgtgaaggc 1390656  T
Q  115 ataacgaggaagaggaacgagtgaggatggagtgtggtgggtgagtttgtgaagtttgagtttgagatttggggggtttttgggggaaagtaagaaagcg 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  1390655 ataacgaggaagaggaacgagtgaggatggagtgtggtgggtgagtttgtgaagtttgagtttgagatttgggggg-ttttgggggaaagtaagaaagcg 1390557  T
Q  215 gggaaatgaaattttgggtagagagcgtaaatgaaattggaacgcgccttttaattcatttaacaaagaaaagttgcgacaattgctccaaacagtcgca 314  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||             
T  1390556 gggaaatgaaattttggatagagagcgtaaatgaaattgcaacgcgccttttaattcatttaacaaagaaaagctgcgacagttgctccaa--------- 1390466  T
Q  315 acaaccgttgcaaatgtgcattttgaggcaattataaggtaagggtcgcagatgaagtgtcgcaatttgcagtttttcttgtagtgagttttgagataaa 414  Q
                 ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1390465 -------------atgtgcattttgaggcagttataagttaagggtcgcagatgaagtgtcgcaatttgcagtttttcttgtagtgagttttgagataaa 1390379  T
Q  415 ggtgttgaatcatctgaaggctgccccttctcagttgcaccctttgagtttggttttggtaaaggtattgcatttggtctctctaaatgcatatttac 512  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1390378 ggtgttgaatcatctgaaggctgccccttctcagttgcaccctttgagtttggttttggtaaaggtattgcatttggtctctctaaatgcatatttac 1390281  T

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Target: chr1; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 580 - 675
Target Start/End: Complemental strand, 1390223 - 1390128
Alignment:
Q  580 cctctagtacttcttcatcttcattttgtgataactctacagaagatagacactttgataaactgttcgtaaatttgaacatagagaagtcagctg 675  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1390223 cctctagtacttcttcatcttcattttgtgataactctacagaagatagacactttgataaactgttcgtaaatttgaacatagagaagtcagctg 1390128  T

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Target: chr1; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 304 - 400
Target Start/End: Original strand, 21859717 - 21859813
Alignment:
Q  304 aaacagtcgcaacaaccgttgcaaatgtgcattttgaggcaattataaggtaagggtcgcagatgaagtgtcgcaatttgcagtttttcttgtagtg 400  Q
    |||||| ||||||||| ||||||||  |||||||||||||| || |||| ||||| ||||||||||||||||||||  |||||||||||||||||||    
T  21859717 aaacagccgcaacaactgttgcaaaaatgcattttgaggcagttgtaagttaaggttcgcagatgaagtgtcgcaaaatgcagtttttcttgtagtg 21859813  T

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Target: chr1; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 716 - 765
Target Start/End: Complemental strand, 1390131 - 1390082
Alignment:
Q  716 gctgtattagaataactatataatgtagattgcattgtatatggcatagg 765  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1390131 gctgtattagaataactatataatgtagattgcattgtatatggcatagg 1390082  T

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Target: chr1; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 305 - 400
Target Start/End: Complemental strand, 22916379 - 22916284
Alignment:
Q  305 aacagtcgcaacaaccgttgcaaatgtgcattttgaggcaattataaggtaagggtcgcagatgaagtgtcgcaatttgcagtttttcttgtagtg 400  Q
    ||||||||||||||||||| ||||  |||| |||||| || |||||||||| ||||||| ||||| ||||||||| |||  | |||||||||||||    
T  22916379 aacagtcgcaacaaccgtttcaaaaatgcactttgagacagttataaggtaggggtcgctgatgaggtgtcgcaaattgatgattttcttgtagtg 22916284  T

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Target: chr6 (Bit Score: 96; Significance: 1e-46; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 237 - 400
Target Start/End: Original strand, 33596362 - 33596524
Alignment:
Q  237 gagcgtaaatgaaattggaacgcgccttttaattcatttaacaaagaaaagttgcgacaattgctccaaacagtcgcaacaaccgttgcaaatgtgcatt 336  Q
    ||||||||||||||||  || ||||||||||| ||||| ||||||||||| |||||||| |||  ||||||||| |||||||||||||||||||| ||||    
T  33596362 gagcgtaaatgaaattacaaagcgccttttaagtcatt-aacaaagaaaacttgcgacagttgacccaaacagttgcaacaaccgttgcaaatgttcatt 33596460  T
Q  337 ttgaggcaattataaggtaagggtcgcagatgaagtgtcgcaatttgcagtttttcttgtagtg 400  Q
    |||||||| |||||||||| ||||||||||||||||||| |||||||| | |||||||||||||    
T  33596461 ttgaggcagttataaggtaggggtcgcagatgaagtgtcacaatttgctgattttcttgtagtg 33596524  T

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Target: chr6; HSP #2
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 304 - 400
Target Start/End: Complemental strand, 14958998 - 14958902
Alignment:
Q  304 aaacagtcgcaacaaccgttgcaaatgtgcattttgaggcaattataaggtaagggtcgcagatgaagtgtcgcaatttgcagtttttcttgtagtg 400  Q
    |||||| ||||||||||||||||||  |||||||||||||| || |||| ||||||||||||||||||||||||||  |||||||||||||||||||    
T  14958998 aaacagccgcaacaaccgttgcaaaaatgcattttgaggcagttgtaagttaagggtcgcagatgaagtgtcgcaaaatgcagtttttcttgtagtg 14958902  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 303 - 401
Target Start/End: Complemental strand, 8877922 - 8877825
Alignment:
Q  303 caaacagtcgcaacaaccgttgcaaatgtgcattttgaggcaattataaggtaagggtcgcagatgaagtgtcgcaatttgcagtttttcttgtagtga 401  Q
    ||||||| ||||||||| ||||||||  ||||||| |||||| ||  |||| | |||||||||||||||||||||||||| |   ||||||||||||||    
T  8877922 caaacagccgcaacaactgttgcaaaaatgcattt-gaggcagttgcaaggcatgggtcgcagatgaagtgtcgcaatttccttattttcttgtagtga 8877825  T

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Target: chr7 (Bit Score: 61; Significance: 9e-26; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 304 - 400
Target Start/End: Complemental strand, 48629521 - 48629425
Alignment:
Q  304 aaacagtcgcaacaaccgttgcaaatgtgcattttgaggcaattataaggtaagggtcgcagatgaagtgtcgcaatttgcagtttttcttgtagtg 400  Q
    |||||| ||||||||| ||||||||  |||||||||||||| || |||| ||||||||||||||||||||||||||  |||||||||||||||||||    
T  48629521 aaacagccgcaacaactgttgcaaaaatgcattttgaggcagttgtaagttaagggtcgcagatgaagtgtcgcaaaatgcagtttttcttgtagtg 48629425  T

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Target: scaffold0186 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 303 - 401
Target Start/End: Original strand, 2723 - 2821
Alignment:
Q  303 caaacagtcgcaacaaccgttgcaaatgtgcattttgaggcaattataaggtaagggtcgcagatgaagtgtcgcaatttgcagtttttcttgtagtga 401  Q
    ||||||| ||||||||| ||||||||  |||||||||||||  || |||| ||||||||||||||||||||||||||  ||||||||||||||||||||    
T  2723 caaacagccgcaacaactgttgcaaaaatgcattttgaggcggttgtaagttaagggtcgcagatgaagtgtcgcaaaatgcagtttttcttgtagtga 2821  T

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Target: chr4 (Bit Score: 59; Significance: 1e-24; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 305 - 391
Target Start/End: Complemental strand, 4103312 - 4103226
Alignment:
Q  305 aacagtcgcaacaaccgttgcaaatgtgcattttgaggcaattataaggtaagggtcgcagatgaagtgtcgcaatttgcagttttt 391  Q
    ||||| ||||||||| ||||||||  |||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||    
T  4103312 aacagccgcaacaactgttgcaaaaatgcactttgaggcagttgtaaggtaagggtcgcagatgaagtgtcgcaatttgcagttttt 4103226  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 67 - 131
Target Start/End: Original strand, 52477314 - 52477378
Alignment:
Q  67 gagtgtgtaggttaggttgggagtgtgagagcgagtgtgtgtgaaggcataacgaggaagaggaa 131  Q
    ||||||||||| ||||||||||||||||||||||| | |||||||| |||||||||||| |||||    
T  52477314 gagtgtgtaggctaggttgggagtgtgagagcgagagcgtgtgaagccataacgaggaaaaggaa 52477378  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 79 - 141
Target Start/End: Original strand, 2302234 - 2302296
Alignment:
Q  79 taggttgggagtgtgagagcgagtgtgtgtgaaggcataacgaggaagaggaacgagtgagga 141  Q
    |||||||||||||||||||||| ||||  ||||||||||| |||||||| ||| |||||||||    
T  2302234 taggttgggagtgtgagagcgactgtgattgaaggcataatgaggaagaagaaggagtgagga 2302296  T

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Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 305 - 401
Target Start/End: Complemental strand, 27438010 - 27437912
Alignment:
Q  305 aacagtcgcaacaaccgttgcaaatgtgcattttgaggcaattataaggtaagggtcgcagatgaagtgtcgcaatttgca--gtttttcttgtagtga 401  Q
    ||||| ||||||||| ||||||||  |||| ||||||||| ||  ||||||||| ||||||||||||||||||||||||||  ||||||||||||||||    
T  27438010 aacagccgcaacaactgttgcaaaaatgcactttgaggcagttgcaaggtaaggatcgcagatgaagtgtcgcaatttgcagtgtttttcttgtagtga 27437912  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 303 - 401
Target Start/End: Complemental strand, 9775225 - 9775128
Alignment:
Q  303 caaacagtcgcaacaaccgttgcaaatgtgcattttgaggcaattataaggtaagggtcgcagatgaagtgtcgcaatttgcagtttttcttgtagtga 401  Q
    ||||||| |||||||||  |||||||  |||||||||||||  || |||| ||||||||||||||||||||||||||  ||||| ||||||||||||||    
T  9775225 caaacagccgcaacaactattgcaaaaatgcattttgaggcggttgtaagttaagggtcgcagatgaagtgtcgcaaaatgcag-ttttcttgtagtga 9775128  T

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Target: chr2 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 321 - 400
Target Start/End: Original strand, 27513752 - 27513831
Alignment:
Q  321 gttgcaaatgtgcattttgaggcaattataaggtaagggtcgcagatgaagtgtcgcaatttgcagtttttcttgtagtg 400  Q
    ||||||||  |||| ||||||||| ||  || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  27513752 gttgcaaaaatgcactttgaggcagttgcaaagtaagggtcgcagatgaagtgtcgcaatttgcagtttttcttgtagtg 27513831  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 716 - 762
Target Start/End: Complemental strand, 4747740 - 4747694
Alignment:
Q  716 gctgtattagaataactatataatgtagattgcattgtatatggcat 762  Q
    |||||||||||| ||||| ||||||||||||||||||| ||||||||    
T  4747740 gctgtattagaacaactacataatgtagattgcattgtgtatggcat 4747694  T

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Target: chr8 (Bit Score: 48; Significance: 5e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 321 - 400
Target Start/End: Complemental strand, 15327928 - 15327849
Alignment:
Q  321 gttgcaaatgtgcattttgaggcaattataaggtaagggtcgcagatgaagtgtcgcaatttgcagtttttcttgtagtg 400  Q
    ||||||||  |||| ||||||||| ||  || ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  15327928 gttgcaaaaatgcactttgaggcagttgcaaagtaagggtcgcagatgaagtgtcacaatttgcagtttttcttgtagtg 15327849  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 321 - 400
Target Start/End: Complemental strand, 15508297 - 15508218
Alignment:
Q  321 gttgcaaatgtgcattttgaggcaattataaggtaagggtcgcagatgaagtgtcgcaatttgcagtttttcttgtagtg 400  Q
    ||||||||  |||| ||||||||| ||  || ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  15508297 gttgcaaaaatgcactttgaggcagttgcaaagtaagggtcgcagatgaagtgtcacaatttgcagtttttcttgtagtg 15508218  T

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Target: scaffold0131 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 309 - 378
Target Start/End: Complemental strand, 10365 - 10296
Alignment:
Q  309 gtcgcaacaaccgttgcaaatgtgcattttgaggcaattataaggtaagggtcgcagatgaagtgtcgca 378  Q
    |||||| |||| ||||||||  ||||  |||||||| ||||||||||||||||||| |||||||||||||    
T  10365 gtcgcagcaactgttgcaaagttgcacattgaggcagttataaggtaagggtcgcaaatgaagtgtcgca 10296  T

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Target: scaffold0003 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 309 - 397
Target Start/End: Complemental strand, 111091 - 111003
Alignment:
Q  309 gtcgcaacaaccgttgcaaatgtgcattttgaggcaattataaggtaagggtcgcagatgaagtgtcgcaatttgcagtttttcttgta 397  Q
    ||||||||||| ||||| ||| ||||  |||||||| |||||||||||||||||||  || ||||||||||  ||| | ||||||||||    
T  111091 gtcgcaacaactgttgcgaatatgcacattgaggcagttataaggtaagggtcgcaattgcagtgtcgcaaaatgctgattttcttgta 111003  T

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