View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17195_low_10 (Length: 519)
Name: NF17195_low_10
Description: NF17195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17195_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 448; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 19 - 514
Target Start/End: Original strand, 10586347 - 10586842
Alignment:
| Q |
19 |
agagagaacatacattaacaaagcaatcatgaaattgaaatctcataacagaggcaacacttcttggttcttttttaagagcatttctcataacatctct |
118 |
Q |
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| T |
10586347 |
agagagaacatacattaacaaagcaatcatgaaattgaaatctcataacagaggcaacacttcttggttcttttttaagagcatttctcataacatctct |
10586446 |
T |
|
| Q |
119 |
cacaattgttgcagcttgtggacatgtttttgagtaatacccaggtcgaagatctgttgatgttactatgattatgtttatgatgaagatcagaaacata |
218 |
Q |
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| T |
10586447 |
cacagttgtttcagcttgtggacatgtttttgagtaatacccaggtcgaagatctgttgatgttactatgattatgtttatgatgaagatcagaaacata |
10586546 |
T |
|
| Q |
219 |
aacatggtaattttagttttgtcttgaaccatgtttgtgtgagtggaaagaagagacaggtagactacaaagtttgtggattttgttacttcccactttg |
318 |
Q |
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| T |
10586547 |
agcatggtaattttagttttgtcttgaaacatgtttgtgtgagtggaaagaagagacaggtagactacaaagtttgtggattttgttacttcccactttg |
10586646 |
T |
|
| Q |
319 |
attcggtggatatttatagtggtagaagaagaaaaagagagtgagtggctcgtaactttatggcatatagtaatnnnnnnnntcttttgaggggttatgg |
418 |
Q |
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| T |
10586647 |
attcggtggatatttatagtggtagaagaagaaaaagagagtgagtggctcgtaactttatggcatatagtaataaaaaaaatcttttgaggggttatgg |
10586746 |
T |
|
| Q |
419 |
aatataataattttgttgactaaaatgtgtcataattaatgcttattttctaagtcaaaatataaaattaaataattggttactccctatgcttct |
514 |
Q |
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| T |
10586747 |
aatataataattttgttgactaaaatgtgtcataattaatgcttattttcttagtcaaaatataaaattaaataattggttactccctatgattct |
10586842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 19 - 226
Target Start/End: Complemental strand, 10498897 - 10498684
Alignment:
| Q |
19 |
agagagaacatacattaacaaagcaatcatgaaattgaaatctcataacagaggcaacacttcttggttcttttttaagagcatttctcataacatctct |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||| |
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| T |
10498897 |
agagagaacatacattaacaaagcaatcatgaaactgaagtctcataacagaggcaacacttcttggttctcttataagagcttttctcataacatctct |
10498798 |
T |
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| Q |
119 |
cacaattgttgcagcttgtggacatgtttttgagtaatacccaggtcgaagatc------tgttgatgttactatgattatgtttatgatgaagatcaga |
212 |
Q |
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| T |
10498797 |
gacaatggtttcagcttttggacatgtttttgagtaaaacccaggtcgaagatctgatgatgatgatgttactgtgatgatgtttatgatgaagatcaga |
10498698 |
T |
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| Q |
213 |
aacataaacatggt |
226 |
Q |
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|||| ||||||||| |
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| T |
10498697 |
aacagaaacatggt |
10498684 |
T |
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Back To:
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