View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17195_low_12 (Length: 491)
Name: NF17195_low_12
Description: NF17195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17195_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 16 - 479
Target Start/End: Original strand, 5313190 - 5313657
Alignment:
| Q |
16 |
aatattagaggatccattacacacaagagaaaaattcaaactaaatttgtctcttttgatgcttgaacaaattaacagaactttgtttttcttcaatgat |
115 |
Q |
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| T |
5313190 |
aatattagaggatccattacacacaagagaaaaattcaaactaaatttctctcttttgatgcttgaacaaattaacagaactttgtttttcttcaatgat |
5313289 |
T |
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| Q |
116 |
aaaataaaagtagggtaagtttttccatgtcttcaaaactattatttgtattaggcaaaacagggagaccagattggatttaaacaataataataaaaac |
215 |
Q |
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| T |
5313290 |
aaaataaaagtagggtaagtttttccatgtcttcaaaactattatttgtattaggcaaaacagggagaccagattggatttaaacaataataataaaaac |
5313389 |
T |
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| Q |
216 |
aaattctcatcaagcatcgtatccg----acaattctgatacgttgatgtaataatgcacattatagcttcgtaccattaactcatcaagattttcagtg |
311 |
Q |
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| T |
5313390 |
aaattctcatcaagcatcgtatccgtccgacaattctgaatcgttgatgtaataatgcacattatagcttcgtaccattaactcatcaagattttcagtg |
5313489 |
T |
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| Q |
312 |
ttatacaccatttgataggaatagtaagtgtttggatagtatttagagaaaaaatgatgaacagaacagtcacgagccttgtgttcaatacataatggaa |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
5313490 |
ttatacaccatttgataggaatagtaagtgtttggatagtatttagagaaaaaatgatgaacagaacagtcgcgagccttgtgttcaatacataatggaa |
5313589 |
T |
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| Q |
412 |
tttcacgaacaatgacagtatatcggtcaggtgtatgctttaaattttgcagttgttgaatcctttga |
479 |
Q |
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| T |
5313590 |
tttcacgaacaatgacagtatatcggtcaggtgtatgctttaaattttgcagttgttgaatcctttga |
5313657 |
T |
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