View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17195_low_13 (Length: 483)
Name: NF17195_low_13
Description: NF17195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17195_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 445; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 11 - 467
Target Start/End: Original strand, 41562126 - 41562582
Alignment:
| Q |
11 |
caaaggcatggaaaggagctattgatcaattcaaagaatctgaactctcagcacaagggatattggtgaatacttttgaggagctggagaaggtttatgt |
110 |
Q |
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| T |
41562126 |
caaaggcatggaaaggagctattgatcaattcaaagaatctgaactctcagcacaagggatattggtgaatacttttgaggagctggagaaggtttatgt |
41562225 |
T |
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| Q |
111 |
tagaggttatgagaaagttgctaaaaaggtttggtgtataggaccactttccttgcatgacaagttaaccttcaacaagtttggtaaagacgataaggga |
210 |
Q |
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| T |
41562226 |
tagaggttatgagaaagttgctaaaaaggtttggtgtataggaccactttccttgcatgacaggttaaccttcaacaagtttggtaaagacgataaggga |
41562325 |
T |
|
| Q |
211 |
ttcatcgatgattccgaaaccaaatgtctaaagtttcttatttcaaacaaagcttgttctgtcatctatgcatgttttggtagtttatctttcattccta |
310 |
Q |
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| T |
41562326 |
ttcatcgacgattccgaaaccaaatgtctaaagtttcttatttcaaacaaagcttgttctgtcatctatgcatgttttggtagtttatctttcattccta |
41562425 |
T |
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| Q |
311 |
cttcacagctaaaggaacttgctttaggattggaagcatcaaaccatccattcatttgggtgattggaaaaaatgattgttctattgaattagagaagtg |
410 |
Q |
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| T |
41562426 |
cttcacaactaaaggaacttgctttaggattggaagcatcaaaccatccattcatttgggtgattggaaaaaatgattgttctattgaattagagaagtg |
41562525 |
T |
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| Q |
411 |
gttaaaagaagagaattttgaagagaggactaaaggaaaaggagttatagttaaagg |
467 |
Q |
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| T |
41562526 |
gttaaaagaagagaattttgaagagaggactaaaggaaaaggagttatagttaaagg |
41562582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 189 - 342
Target Start/End: Original strand, 46656889 - 46657042
Alignment:
| Q |
189 |
gtttggtaaagacgataagggattcatcgatgattccgaaaccaaatgtctaaagtttcttatttcaaacaaagcttgttctgtcatctatgcatgtttt |
288 |
Q |
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| T |
46656889 |
gtttggtaaaaacgataagggatgcatcaatgattctgaaaccaaatgtctaaagttttttatttgaaacaaagcttgctctgtcatatatgcatgtttt |
46656988 |
T |
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| Q |
289 |
ggtagtttatctttcattcctacttcacagctaaaggaacttgctttaggattg |
342 |
Q |
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| T |
46656989 |
ggtagtttgtcttacattccttcttcacaactaaaggaaattgctttaggattg |
46657042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 11 - 87
Target Start/End: Original strand, 46656776 - 46656852
Alignment:
| Q |
11 |
caaaggcatggaaaggagctattgatcaattcaaagaatctgaactctcagcacaagggatattggtgaatactttt |
87 |
Q |
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| T |
46656776 |
caaaggcatggaaagaagctattgatcaattcaaagaatctaaactctcagcacaaggaatattggtgaatactttt |
46656852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 117 - 145
Target Start/End: Original strand, 46656862 - 46656890
Alignment:
| Q |
117 |
ttatgagaaagttgctaaaaaggtttggt |
145 |
Q |
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| T |
46656862 |
ttatgagaaagttgctaaaaaggtttggt |
46656890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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