View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17195_low_14 (Length: 475)
Name: NF17195_low_14
Description: NF17195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17195_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 425; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 20 - 463
Target Start/End: Original strand, 35079610 - 35080054
Alignment:
| Q |
20 |
gttgggattttattgccttctttattgccacaatctttaaaaaggacctgcaaaaggttagataatctttgatcaaggtaattttagggtaagcttctat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35079610 |
gttgggattttattgccttctttattgccacagtctttaaaaaggacctgcaaaaggttagataatctttgatcaaggtaattttagggtaagcttctat |
35079709 |
T |
|
| Q |
120 |
aagtttgagacaacgttgttcgaattctttctgacgaggttctttacatacacttttgtacaacttggggcttggtgttggtagtgaaatggcatgggaa |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35079710 |
aagtttgagacaacgttgttcgaattctttctgacgaggttctttacatacacttttgtacaacttggggcttggtgttggtagtgaaatggcatgggaa |
35079809 |
T |
|
| Q |
220 |
ataaagatcattgaaatagcgagcaaaacggataaacaagctgaaggtgccatttcacttttgttaattataatgaactatagaacttactttatggttc |
319 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35079810 |
ataaagatcattgaaataacgagcaaaacggataaacaagctgaaggtgccatttctcttttgttaattataatgaactatagaacttactttatggttc |
35079909 |
T |
|
| Q |
320 |
ttaatttataggcaaattttacatgt-atctcaaaaatgacggttttaaaaccgttctttttaacaaaagaatactaaagagtaaagacagttttttgcg |
418 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35079910 |
ttaatttataggcaaattttacatgtcatctcaaaaatgacggttttaaaaccgttctttttaacaaaagaatactaaagagtaaagacagttttttgcg |
35080009 |
T |
|
| Q |
419 |
taaatcgagtcaagcaaatccaccagccattaatactctttgttc |
463 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35080010 |
taaatcgagtcaagcaaatccaccagccattaatactctttgttc |
35080054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 20 - 293
Target Start/End: Original strand, 35074641 - 35074911
Alignment:
| Q |
20 |
gttgggattttattgccttctttattgccacaatctttaaaaaggacctgcaaaaggttagataatctttgatcaaggtaattttagggtaagcttctat |
119 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||| |||||| ||||||| ||||||||||||||| |
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|
| T |
35074641 |
gttgggattttactgccttctctattgccacaatctttaaaaatgacctgcaaaaagttagataatcttcgatcaaagtaatttgagggtaagcttctat |
35074740 |
T |
|
| Q |
120 |
aagtttgagacaacgttgttcgaattctttctgacgaggttctttacatacacttttgtacaacttggggcttggtgttggtagtgaaatggcatgggaa |
219 |
Q |
| |
|
||||||||||||||||||||| || ||||| |||| || |||||| |||| || || ||||||||| ||||||||||||| |||||| |||||| || |
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| T |
35074741 |
aagtttgagacaacgttgttcaaagtctttttgaccagattctttgcatatacgttcgtacaacttagggcttggtgttg---gtgaaagggcatgacaa |
35074837 |
T |
|
| Q |
220 |
ataaagatcattgaaatagcgagcaaaacggataaacaagctgaaggtgccatttcacttttgttaattataat |
293 |
Q |
| |
|
|||||||||||||||||| || |||| |||||| | | ||||||||||||||| |||||||||||||||| |
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|
| T |
35074838 |
ataaagatcattgaaataatgataaaaaaggataagtatgttgaaggtgccatttctattttgttaattataat |
35074911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 137; Significance: 2e-71; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 20 - 274
Target Start/End: Original strand, 23914928 - 23915179
Alignment:
| Q |
20 |
gttgggattttattgccttctttattgccacaatctttaaaaaggacctgcaaaaggttagataatctttgatcaaggtaattttagggtaagcttctat |
119 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||| ||||||||||||||||| |||||| ||||||| ||||||| |
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| T |
23914928 |
gttgggattttattgccttccctattgccgcaatctttaaaaatgacctgcaaaaggtaagataatctttgatcaaagtaattggagggtaaccttctat |
23915027 |
T |
|
| Q |
120 |
aagtttgagacaacgttgttcgaattctttctgacgaggttctttacatacacttttgtacaacttggggcttggtgttggtagtgaaatggcatgggaa |
219 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||| ||||| ||| |||||| ||| |||||||||| |||||||||||| ||||| ||||||||||| |
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|
| T |
23915028 |
tagtttgagacagcgttgttcgaagtctttctgaccaggttgtttgcatacattttggtacaacttgaggcttggtgttg---gtgaattggcatgggaa |
23915124 |
T |
|
| Q |
220 |
ataaagatcattgaaatagcgagcaaaacggataaacaagctgaaggtgccattt |
274 |
Q |
| |
|
||||||||||||||||| | |||||||| ||||||| | | ||||| |||||||| |
|
|
| T |
23915125 |
ataaagatcattgaaatggtgagcaaaatggataaataggttgaagatgccattt |
23915179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 20 - 303
Target Start/End: Original strand, 23922565 - 23922858
Alignment:
| Q |
20 |
gttgggattttattgccttctttattgccacaatctttaaaaaggacctgcaaaaggttagataatctttgatcaaggtaattttagggtaagcttctat |
119 |
Q |
| |
|
|||||||||||| |||||||||||||||| || |||||||||| |||||| |||||| |||||||||| ||||| |||||||| |||||||||||||| |
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|
| T |
23922565 |
gttgggattttactgccttctttattgccgcattctttaaaaatgacctgacaaaggtaagataatcttcaatcaaagtaattttggggtaagcttctat |
23922664 |
T |
|
| Q |
120 |
aagtttgagacaacgttgttcgaattctttctgacgaggttctttacatacacttttgtacaacttggggcttggtgttgg---------tagtgaaatg |
210 |
Q |
| |
|
|||||| | |||||||||||| || ||||| |||| |||| |||| |||||| ||| |||||||||||||||||||| ||| | |||||||| |
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|
| T |
23922665 |
aagtttcaaacaacgttgttcaaagtctttttgaccaggtgctttgcatacattttggtacaacttggggcttggtgctggtgttggtgttggtgaaatg |
23922764 |
T |
|
| Q |
211 |
gcatgggaaataaagatcattgaaatagcgagcaaaacggataaacaagctgaaggtgcca-tttcacttttgttaattataatgaactataga |
303 |
Q |
| |
|
||||| |||| ||||||||||||||| | |||||||| ||||||| | ||||||| ||||| |||| |||||||||||||||||| || ||||| |
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|
| T |
23922765 |
gcatgagaaacaaagatcattgaaatggtgagcaaaatggataaataggctgaagatgccattttctcttttgttaattataatggacaataga |
23922858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 20 - 196
Target Start/End: Original strand, 25802987 - 25803163
Alignment:
| Q |
20 |
gttgggattttattgccttctttattgccacaatctttaaaaaggacctgcaaaaggttagataatctttgatcaaggtaattttagggtaagcttctat |
119 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||| |||||| || |||| |||||||| |||||| |
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|
| T |
25802987 |
gttgggattttattgccttgtctattgccacaatctttaaaaatgacctgcaaaaggttagataatcttcgatcaaagtgatttgagggtaagattctat |
25803086 |
T |
|
| Q |
120 |
aagtttgagacaacgttgttcgaattctttctgacgaggttctttacatacacttttgtacaacttggggcttggtg |
196 |
Q |
| |
|
|| || || |||||||||||||| ||||| || | |||||||||||||| ||| ||||||||| |||||||||| |
|
|
| T |
25803087 |
tagcttcaggcaacgttgttcgaagtctttttggccgggttctttacatacgttttggtacaacttagggcttggtg |
25803163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 37 - 193
Target Start/End: Complemental strand, 23995393 - 23995237
Alignment:
| Q |
37 |
ttctttattgccacaatctttaaaaaggacctgcaaaaggttagataatctttgatcaaggtaattttagggtaagcttctataagtttgagacaacgtt |
136 |
Q |
| |
|
|||||||||||||||||||||| | | | ||| |||| || |||||||||| | || | ||||||| |||||| ||||||| ||| | || |||| |
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|
| T |
23995393 |
ttctttattgccacaatctttagatataatctggaaaatgtaagataatcttcggtcgaagtaatttgagggtaggcttctaatgttttcaagcagcgtt |
23995294 |
T |
|
| Q |
137 |
gttcgaattctttctgacgaggttctttacatacacttttgtacaacttggggcttg |
193 |
Q |
| |
|
|||| || ||||| || |||| ||| ||||||||||||| ||||||||| ||||||| |
|
|
| T |
23995293 |
gttcaaaatctttgtggcgagattccttacatacactttggtacaacttagggcttg |
23995237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 159 - 233
Target Start/End: Original strand, 24436204 - 24436275
Alignment:
| Q |
159 |
ttctttacatacacttttgtacaacttggggcttggtgttggtagtgaaatggcatgggaaataaagatcattga |
233 |
Q |
| |
|
|||||||||||||||||| ||||| || ||||||| ||||| |||||||||| || ||||||||||||||||| |
|
|
| T |
24436204 |
ttctttacatacacttttatacaagttagggcttgatgttg---gtgaaatggcgtgagaaataaagatcattga |
24436275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 272
Target Start/End: Original strand, 25803209 - 25803278
Alignment:
| Q |
203 |
gtgaaatggcatgggaaataaagatcattgaaatagcgagcaaaacggataaacaagctgaaggtgccat |
272 |
Q |
| |
|
||||||| ||||| |||||||| ||||||||||| | |||||||| |||||| | | |||||||||||| |
|
|
| T |
25803209 |
gtgaaatagcatgagaaataaacatcattgaaatggtgagcaaaaatgataaatatgttgaaggtgccat |
25803278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 159 - 255
Target Start/End: Complemental strand, 13435894 - 13435801
Alignment:
| Q |
159 |
ttctttacatacacttttgtacaacttggggcttggtgttggtagtgaaatggcatgggaaataaagatcattgaaatagcgagcaaaacggataaa |
255 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||| ||| | |||||||||| || ||||||||||||||||| || | |||||| | ||||||| |
|
|
| T |
13435894 |
ttctttacatacacttttgtacaaattagggcttgatgt---tcgtgaaatggcgtgagaaataaagatcattgatatggtgagcaataaggataaa |
13435801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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