View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17195_low_15 (Length: 467)
Name: NF17195_low_15
Description: NF17195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17195_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 10 - 451
Target Start/End: Original strand, 43931656 - 43932097
Alignment:
| Q |
10 |
aatatagctctaaagtaaatcaggaggtatgcaatagcaataccttgtgagtaactgcatatgctgcttgttctggggtcatgttatcaaatggtgtgag |
109 |
Q |
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| T |
43931656 |
aatatagctctaaagtaaatcaggaggtatgcaatagcaataccttgtgagtaactgcatatgctgcttgttctggtgtcatgttatcaaatggtgtgag |
43931755 |
T |
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| Q |
110 |
tcctgtaattagctcccaaagaactatggcaaaactatagacatctactttctttgtatgacgtttttctctgatcatttcgggcgccatccaacggtaa |
209 |
Q |
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| T |
43931756 |
tcctgttattagctcccaaagaactatggcaaaactatagacatctactttctttgtatgacgtttttctctgatcatttcgggcgccatccaacggtaa |
43931855 |
T |
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| Q |
210 |
gttccagtgaatcctttcgcactgccgcattgagattctaagcatgagatcccaaaatctgccacttttacacacatttcttcatccaatagcagatttt |
309 |
Q |
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| T |
43931856 |
gttccagtgaatcctttcgcgctgccgcattgagattctaagcatgagatcccaaaatctgccacttttacacacatttcttcatccaatagcagatttt |
43931955 |
T |
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| Q |
310 |
ctgatttgagatccctatgaagtattccttgagaatgaagatactgcattcctcttgcaatgtcaagggctaattcaagaaccagtttgagaggaactga |
409 |
Q |
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| T |
43931956 |
ctgatttgagatccctatgaagtattccttgagaatgaagatactgcattcctcttgcaatgtcaagggctaattcaagaaccagtttgagaggaactga |
43932055 |
T |
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| Q |
410 |
atgtggtccttgctgtagaaggtattttctcaatgagcctcc |
451 |
Q |
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| T |
43932056 |
atgtggtccttgctgtagaaggtattttctcaatgagcctcc |
43932097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 150; Significance: 4e-79; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 120 - 445
Target Start/End: Original strand, 35131685 - 35132010
Alignment:
| Q |
120 |
agctcccaaagaactatggcaaaactatagacatctactttctttgtatgacgtttttctctgatcatttcgggcgccatccaacggtaagttccagtga |
219 |
Q |
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|||||||||||||| || | |||||||| ||||| ||||| || |||||| ||||||||||||||||||| || |||||||||||||| ||||| || | |
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| T |
35131685 |
agctcccaaagaacgataccgaaactatacacatccacttttttagtatgatgtttttctctgatcatttcaggagccatccaacggtatgttccggtaa |
35131784 |
T |
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| Q |
220 |
atcctttcgcactgccgcattgagattctaagcatgagatcccaaaatctgccacttttacacacatttcttcatccaatagcagattttctgatttgag |
319 |
Q |
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| T |
35131785 |
atccttttgcgctgccacattgagattccaagcatgagataccaaaatctgctacttttacacacatatcttcatctaaaaggagattctctgatttgag |
35131884 |
T |
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| Q |
320 |
atccctatgaagtattccttgagaatgaagatactgcattcctcttgcaatgtcaagggctaattcaagaaccagtttgagaggaactgaatgtggtcct |
419 |
Q |
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| T |
35131885 |
atccctatgaagtatcccttgagaatgaagatatttcattccccttgcaatgtctagtgctaatttcagaacaagttcatgtggaactgaatgtggttct |
35131984 |
T |
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| Q |
420 |
tgctgtagaaggtattttctcaatga |
445 |
Q |
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|| || | |||||||| |||||||| |
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| T |
35131985 |
tgttgatgtaggtatttcctcaatga |
35132010 |
T |
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