View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17195_low_16 (Length: 411)
Name: NF17195_low_16
Description: NF17195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17195_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 13 - 393
Target Start/End: Original strand, 49885908 - 49886284
Alignment:
| Q |
13 |
gagatatttttcactaacattaacatgacaaatgttaaaaatccaatcattattgaccaggagtatgaatgtgatgatatttgtaaaaagaaggtactta |
112 |
Q |
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| T |
49885908 |
gagatatttttcactaacattaacatgacaaatgttaaaaatccaatcattattgaccaggaatatgaatgtgatgatatttgtaaaaagaaggtactta |
49886007 |
T |
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| Q |
113 |
tttgcactacaacaaaaactattttaacagcaagatgttaataattgtgatacttatatatttattttcgtgcatgcagccttcattggtgaagattgca |
212 |
Q |
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| T |
49886008 |
tttgcactacaacaaaaactattttaacagcaagatgttaataattgtgatacttatatatttatttacgtgca----gccttcattggtgaagattgca |
49886103 |
T |
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| Q |
213 |
aatattcatttttcaaatataaggggaacttcagctacaccaatggtagtggatatgagatgcagcaagatgcatacatgccccggtgttacatttaata |
312 |
Q |
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| T |
49886104 |
aatattcatttttcaaatataaggggaacttcagctacaccaatggtagtggatatgagatgcagcaagatgcatacatgccccggtgttacatttaata |
49886203 |
T |
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| Q |
313 |
acgtcgacctaaagtttggatcagcccctaccacagctagatgtgtcaatgttaagcctgtctatactggcttggcaaagc |
393 |
Q |
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| T |
49886204 |
acgtcgacctaaagtttggatcagcccttaccacagctagatgtgtcaatgttaagcctgtctatactggcttggcaaagc |
49886284 |
T |
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