View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17195_low_17 (Length: 410)

Name: NF17195_low_17
Description: NF17195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17195_low_17
NF17195_low_17
[»] chr6 (17 HSPs)
chr6 (15-398)||(6472562-6472945)
chr6 (15-398)||(13035256-13035644)
chr6 (18-397)||(6515623-6516002)
chr6 (18-400)||(6505757-6506139)
chr6 (18-355)||(6528518-6528858)
chr6 (79-397)||(6465610-6465931)
chr6 (253-398)||(1841646-1841791)
chr6 (253-355)||(6520324-6520426)
chr6 (260-400)||(6496947-6497087)
chr6 (260-400)||(6461585-6461725)
chr6 (308-385)||(1822092-1822169)
chr6 (253-398)||(1838775-1838919)
chr6 (260-392)||(6457658-6457790)
chr6 (15-215)||(6461331-6461534)
chr6 (15-215)||(6497138-6497341)
chr6 (314-367)||(6526679-6526732)
chr6 (207-286)||(6526737-6526816)
[»] chr1 (1 HSPs)
chr1 (253-397)||(35231196-35231343)
[»] chr7 (3 HSPs)
chr7 (260-397)||(4046509-4046646)
chr7 (263-298)||(9665067-9665102)
chr7 (15-125)||(9664819-9664929)
[»] chr4 (3 HSPs)
chr4 (159-283)||(49569685-49569812)
chr4 (263-298)||(13536091-13536126)
chr4 (15-125)||(13535843-13535953)


Alignment Details
Target: chr6 (Bit Score: 352; Significance: 0; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 15 - 398
Target Start/End: Original strand, 6472562 - 6472945
Alignment:
Q  15 atcacttctgaggccttttccggaataattcggataactttgttaccggattccaattcaaaaaatgaggatgttcttgataagtacagttcttgttacc 114  Q
    ||||||||||||||||||||||| || ||||||||| ||||||| |||||||||||||||||||| || ||||| |||||||||||||||||||||||||    
T  6472562 atcacttctgaggccttttccggcatgattcggatagctttgttgccggattccaattcaaaaaacgaagatgtccttgataagtacagttcttgttacc 6472661  T
Q  115 ctttgtcaggtgaagctatgctcaaagaaccgtttagtgttgagtataagtttgagaagaaaggttcaggtgatttactgatgttagcacaccctcttca 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6472662 ctttgtcaggtgaagctatgctcaaagaaccgtttagtgttgagtataagtttgagaagaaaggttcaggtgatttactgatgttagcacaccctcttca 6472761  T
Q  215 tctccagcttatgtctaaaagtgattccaatgctacctttttgagtgattttaagtataaaagcattgatggtgaacttgttggagttgttggtgattca 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6472762 tctccagcttatgtctaaaagtgattccaatgctacctttttgagggattttaagtataaaagcattgatggtgaacttgttggagttgttggtgattca 6472861  T
Q  315 tggcttttgaaaacagatcctgtttctattacttggcattcaagcaaaggtgtaaaagaagaatcacatgacgaaattgtttca 398  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6472862 tggcttttgaaaacagatcctgtttctattacttggcattcaagcaaaggtgtaaaagaagaatcacatgacgaaattgtttca 6472945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 15 - 398
Target Start/End: Original strand, 13035256 - 13035644
Alignment:
Q  15 atcacttctgaggccttttccggaataattcggataactttgttaccggattccaattcaaaaaatgaggatgttcttgataagtacag----ttcttgt 110  Q
    ||||||||||||||||||||| | |||||||||||  |||| || ||||||| |||||||||||| |||||| ||||||| |||||||     |||||||    
T  13035256 atcacttctgaggccttttccagcataattcggattgctttatttccggatttcaattcaaaaaacgaggatattcttgacaagtacacacaattcttgt 13035355  T
Q  111 taccctttgtcaggtgaagctatgctcaaagaaccgtttagtgttgagtataagtttgagaagaaaggttcaggtgatttactgatgttagcacaccctc 210  Q
    |||||| |||||||||||| |||| |||||||||| ||||  ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||    
T  13035356 taccctctgtcaggtgaagttatgatcaaagaaccatttaaggttgagtataagtttaataagaaaggttcaggtgatttactgatgttagcacaccctc 13035455  T
Q  211 ttcatctccagcttatgtctaaaagtgattccaatgctacctttttg-agtgattttaagtataaaagcattgatggtgaacttgttggagttgttggtg 309  Q
    |||||||||||||||| || |||||||||||||||||||| |||||  ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  13035456 ttcatctccagcttatctcaaaaagtgattccaatgctacatttttttagtgattataagtataaaagcattgatggtgaacttgttggagttgttggtg 13035555  T
Q  310 attcatggcttttgaaaacagatcctgtttctattacttggcattcaagcaaaggtgtaaaagaagaatcacatgacgaaattgtttca 398  Q
    ||||||||||||||||||| ||| |||||||| | ||||||||| |||||||||||||||||||||||||||||||| |||||||||||    
T  13035556 attcatggcttttgaaaaccgattctgtttctgtaacttggcatacaagcaaaggtgtaaaagaagaatcacatgacaaaattgtttca 13035644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 18 - 397
Target Start/End: Original strand, 6515623 - 6516002
Alignment:
Q  18 acttctgaggccttttccggaataattcggataactttgttaccggattccaattcaaaaaatgaggatgttcttgataagtacagttcttgttaccctt 117  Q
    |||||| |||||||||| || |||||||||||  ||||||| ||  ||||| || | ||| |  ||| | ||||||||| ||  ||||||||||||||||    
T  6515623 acttctaaggccttttctggtataattcggatcgctttgttgccaaattccgatccgaaatacaaggctattcttgataggtttagttcttgttaccctt 6515722  T
Q  118 tgtcaggtgaagctatgctcaaagaaccgtttagtgttgagtataagtttgagaagaaaggttcaggtgatttactgatgttagcacaccctcttcatct 217  Q
    | |||||||| ||||  || |  ||| ||||| || |||||||||||||||||||||||||||||||||||||  |  |||||||||||||||||||| |    
T  6515723 tatcaggtgatgctaaacttagtgaaacgttttgtcttgagtataagtttgagaagaaaggttcaggtgatttgttattgttagcacaccctcttcatat 6515822  T
Q  218 ccagcttatgtctaaaagtgattccaatgctacctttttgagtgattttaagtataaaagcattgatggtgaacttgttggagttgttggtgattcatgg 317  Q
     || ||| | ||||||||| |     |||  ||  |||||  |||||| |||||| ||||||||||||| || |||||||| ||||||||||||||||||    
T  6515823 tcaacttttatctaaaagtaaaagtgatgtaactgttttggatgatttcaagtatcaaagcattgatggagaccttgttggtgttgttggtgattcatgg 6515922  T
Q  318 cttttgaaaacagatcctgtttctattacttggcattcaagcaaaggtgtaaaagaagaatcacatgacgaaattgtttc 397  Q
     |||||||||| |||||  ||||| | ||||||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  6515923 attttgaaaaccgatccgatttctgtaacttggcattcaagcaaaggtataaaagaagaatcacatgatgaaattgtttc 6516002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 18 - 400
Target Start/End: Complemental strand, 6506139 - 6505757
Alignment:
Q  18 acttctgaggccttttccggaataattcggataactttgttaccggattccaattcaaaaaatgaggatgttcttgataagtacagttcttgttaccctt 117  Q
    ||||||||  |||||||||| |||||||||||  ||||| |||||| |||  |||| ||||| || | ||||||||| |  |  ||||||||| ||||||    
T  6506139 acttctgacaccttttccggtataattcggattgctttgctaccgggttctgattcgaaaaacgaagctgttcttgacagatttagttcttgtcaccctt 6506040  T
Q  118 tgtcaggtgaagctatgctcaaagaaccgtttagtgttgagtataagtttgagaagaaaggttcaggtgatttactgatgttagcacaccctcttcatct 217  Q
    |  ||||| | ||||  |||| |||||| ||| ||||||||||||||||||||||||| | ||||||||||||  |  | ||||||||||||||||||||    
T  6506039 tagcaggtaatgctaaactcagagaaccattttgtgttgagtataagtttgagaagaatgtttcaggtgatttgttattattagcacaccctcttcatct 6505940  T
Q  218 ccagcttatgtctaaaagtgattccaatgctaccttt-ttgagtgattttaagtataaaagcattgatggtgaacttgttggagttgttggtgattcatg 316  Q
     || ||| |||| ||||||||     |||  ||  || |||| |||||| ||||||| ||||||||||||||| |||||||| |||||||||||||||||    
T  6505939 tcaacttctgtcaaaaagtgagagtgatgtaactgttcttga-tgatttcaagtatacaagcattgatggtgaccttgttggtgttgttggtgattcatg 6505841  T
Q  317 gcttttgaaaacagatcctgtttctattacttggcattcaagcaaaggtgtaaaagaagaatcacatgacgaaattgtttcatc 400  Q
    | ||||||||||||| |||||||| || |||||||| |||||||||||||||||||| |||||||   | ||||||||||||||    
T  6505840 gattttgaaaacagaacctgtttccatgacttggcactcaagcaaaggtgtaaaagacgaatcacgcaatgaaattgtttcatc 6505757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 18 - 355
Target Start/End: Complemental strand, 6528858 - 6528518
Alignment:
Q  18 acttctgaggccttttccggaataattcggataactttgttaccggattccaattcaaaaaatgaggatgttcttgataagtacagttcttgttaccctt 117  Q
    ||||| ||||||||||| || | |||||| ||| |||| || ||||||||  |||||||| |||||| ||||||||| | |||  |||  ||||| |||     
T  6528858 acttccgaggccttttctggcacaattcgaatagctttattgccggattctgattcaaaacatgaggctgttcttgacaggtattgtttctgttatcctg 6528759  T
Q  118 tgtcaggtgaagctatgctcaaagaaccgtttagtgttgagtataagtttgagaagaaaggttcaggtgatttactgatgttagcacaccctcttcatct 217  Q
    |||||||||| ||||| |||| |||||| ||| ||||||||||||| |  |||||||| ||||  ||||||||  |||||||||||||||||||||||||    
T  6528758 tgtcaggtgatgctatactcagagaaccattttgtgttgagtataaatgggagaagaagggttggggtgatttgttgatgttagcacaccctcttcatct 6528659  T
Q  218 ccagcttatgtctaaaagtgatt---ccaatgctacctttttgagtgattttaagtataaaagcattgatggtgaacttgttggagttgttggtgattca 314  Q
     |||||| | ||| | |  ||||     |||  |||  ||||||||||||| |||||||||||||||||||| || ||||||||  |||||| ||||||     
T  6528658 tcagcttttatctgagaaagattgtaagaatattactgttttgagtgatttcaagtataaaagcattgatggcgatcttgttggcattgttgctgattcg 6528559  T
Q  315 tggcttttgaaaacagatcctgtttctattacttggcattc 355  Q
    ||| |||||||||| |||| |||||||||||||||| ||||    
T  6528558 tggattttgaaaactgatcatgtttctattacttggtattc 6528518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 79 - 397
Target Start/End: Complemental strand, 6465931 - 6465610
Alignment:
Q  79 atgaggatgttcttgataagtacagttcttgttaccctttgtcaggtgaagctatgctcaaagaaccgtttagtgttgagtataagtttgagaagaaagg 178  Q
    |||| ||||||||||| | ||  ||||||||||||||||| |  ||||| ||| |  | | | |||| ||| ||||||||||||| |  |||||||||||    
T  6465931 atgaagatgttcttgacaggtttagttcttgttaccctttatgtggtgatgctgtttttacaaaaccattttgtgttgagtataaatgggagaagaaagg 6465832  T
Q  179 ttcaggtgatttactgatgttagcacaccctcttcatctccagcttatgtctaaaagtgattcc---aatgctacctttttgagtgattttaagtataaa 275  Q
    ||  || |||||| |  |||||||||| ||||||||| | |||||| ||| | | |||||||     |||| |||  |||||| |||||||||||||| |    
T  6465831 ttggggggatttattattgttagcacatcctcttcatgttcagcttttgtatgatagtgattgtgataatgttactgttttgaatgattttaagtataga 6465732  T
Q  276 agcattgatggtgaacttgttggagttgttggtgattcatggcttttgaaaacagatcctgtttctattacttggcattcaagcaaaggtgtaaaagaag 375  Q
    || ||||||||||| |||||||| |||||||||||||||||| | |||||||| ||||| |||||| | ||||||||||| |  || ||||| |||||||    
T  6465731 agtattgatggtgatcttgttggtgttgttggtgattcatggttgttgaaaaccgatccggtttctgtaacttggcattctactaagggtgttaaagaag 6465632  T
Q  376 aatcacatgacgaaattgtttc 397  Q
    |||| ||||| || ||||||||    
T  6465631 aatctcatgatgagattgtttc 6465610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 253 - 398
Target Start/End: Original strand, 1841646 - 1841791
Alignment:
Q  253 ttttgagtgattttaagtataaaagcattgatggtgaacttgttggagttgttggtgattcatggcttttgaaaacagatcctgtttctattacttggca 352  Q
    |||||||| |||||||||||||||||||| |||  || |||||    |||||||||||||||||| |||||||||| |||| || ||| || ||||||||    
T  1841646 ttttgagttattttaagtataaaagcatttatgcagagcttgtcaatgttgttggtgattcatggattttgaaaaccgatcatgcttccataacttggca 1841745  T
Q  353 ttcaagcaaaggtgtaaaagaagaatcacatgacgaaattgtttca 398  Q
    ||||||||||||||||||||||||||  ||||| ||||||||||||    
T  1841746 ttcaagcaaaggtgtaaaagaagaatttcatgatgaaattgtttca 1841791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 253 - 355
Target Start/End: Original strand, 6520324 - 6520426
Alignment:
Q  253 ttttgagtgattttaagtataaaagcattgatggtgaacttgttggagttgttggtgattcatggcttttgaaaacagatcctgtttctattacttggca 352  Q
    |||||||||||||||||||||||||||||||||| || |||||||| ||  |||||||||||||| |||||||||| |||||||||||| | ||||||||    
T  6520324 ttttgagtgattttaagtataaaagcattgatggagaccttgttggtgtcattggtgattcatggtttttgaaaactgatcctgtttctgtaacttggca 6520423  T
Q  353 ttc 355  Q
    |||    
T  6520424 ttc 6520426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 260 - 400
Target Start/End: Complemental strand, 6497087 - 6496947
Alignment:
Q  260 tgattttaagtataaaagcattgatggtgaacttgttggagttgttggtgattcatggcttttgaaaacagatcctgtttctattacttggcattcaagc 359  Q
    ||||||||||||| ||||||||||||| || |||||||| |||||||||||||||||||||||| |||| |||||||||| | |||| |||| ||||| |    
T  6497087 tgattttaagtatcaaagcattgatggagaccttgttggtgttgttggtgattcatggcttttggaaactgatcctgtttatgttacatggctttcaacc 6496988  T
Q  360 aaaggtgtaaaagaagaatcacatgacgaaattgtttcatc 400  Q
    || ||||| ||  ||||||| | ||| ||||| ||||||||    
T  6496987 aatggtgtgaagaaagaatctcgtgatgaaatcgtttcatc 6496947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 260 - 400
Target Start/End: Original strand, 6461585 - 6461725
Alignment:
Q  260 tgattttaagtataaaagcattgatggtgaacttgttggagttgttggtgattcatggcttttgaaaacagatcctgtttctattacttggcattcaagc 359  Q
    ||||||||||||| ||||||||||||| || |||||||| |||||||||||||||||||||||| |||| |||||||||  | |||| |||| |||||      
T  6461585 tgattttaagtatcaaagcattgatggagaccttgttggtgttgttggtgattcatggcttttggaaactgatcctgttgatgttacatggctttcaacg 6461684  T
Q  360 aaaggtgtaaaagaagaatcacatgacgaaattgtttcatc 400  Q
    || ||||| ||  ||||||| | ||| ||||| ||||||||    
T  6461685 aatggtgtgaagaaagaatctcgtgatgaaatcgtttcatc 6461725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 308 - 385
Target Start/End: Original strand, 1822092 - 1822169
Alignment:
Q  308 tgattcatggcttttgaaaacagatcctgtttctattacttggcattcaagcaaaggtgtaaaagaagaatcacatga 385  Q
    ||||||||||||||||||||  |||||||||||  | ||||||||||||||||||||||| ||| ||||||| |||||    
T  1822092 tgattcatggcttttgaaaatcgatcctgtttccgtaacttggcattcaagcaaaggtgttaaacaagaatctcatga 1822169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 253 - 398
Target Start/End: Original strand, 1838775 - 1838919
Alignment:
Q  253 ttttgagtgattttaagtataaaagcattgatggtgaacttgttggagttgttggtgattcatggcttttgaaaacagatcctgtttctattacttggca 352  Q
    |||||||| |||| |||||||||||| ||||| | || | ||| || | ||||||| |||||||| |||||||||| |||| ||||||| |  |||||||    
T  1838775 ttttgagttatttcaagtataaaagctttgatcgagagcctgtcggtgctgttggt-attcatggattttgaaaaccgatcatgtttctgtatcttggca 1838873  T
Q  353 ttcaagcaaaggtgtaaaagaagaatcacatgacgaaattgtttca 398  Q
    |||||| ||  ||||||| ||||||||  |||| ||||||||||||    
T  1838874 ttcaagaaattgtgtaaatgaagaatctaatgatgaaattgtttca 1838919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 260 - 392
Target Start/End: Complemental strand, 6457790 - 6457658
Alignment:
Q  260 tgattttaagtataaaagcattgatggtgaacttgttggagttgttggtgattcatggcttttgaaaacagatcctgtttctattacttggcattcaagc 359  Q
    |||||| |||||| |||||||||| || || |||||||| |||||||| || |||||| | ||||||||  ||||||||||| |||| |||||||| | |    
T  6457790 tgatttgaagtatcaaagcattgacggcgagcttgttggtgttgttggagactcatggttattgaaaactcatcctgtttctgttacatggcattccacc 6457691  T
Q  360 aaaggtgtaaaagaagaatcacatgacgaaatt 392  Q
    |||||| | || |||||||  ||||| ||||||    
T  6457690 aaaggtatcaatgaagaatttcatgatgaaatt 6457658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 215
Target Start/End: Original strand, 6461331 - 6461534
Alignment:
Q  15 atcacttctgaggccttttccggaataattcggataactttgttaccggattccaattcaaaaaatgaggatgttcttgataagtacagttcttgttacc 114  Q
    ||||| |||||||||||||| ||  ||||||| ||  |||||||  || ||||||||||| ||||||| || |||||||| | |   ||| |||||||||    
T  6461331 atcacatctgaggccttttctggtgtaattcgaattgctttgttgacgaattccaattcacaaaatgaagaagttcttgacatggttagtacttgttacc 6461430  T
Q  115 ctttgtcaggtgaagctatgctcaaagaaccgtttagtgttgagtataagtttgagaagaaaggttcag---gtgatttactgatgttagcacaccctct 211  Q
    || |||| ||||| |||    |||| ||| | |||| | | ||||||||||  |||| |||||||||||   |||||||  |||||||||| ||||||||    
T  6461431 ctgtgtctggtgatgcttcattcaatgaagcatttactatggagtataagtgggagacgaaaggttcaggaagtgatttgttgatgttagctcaccctct 6461530  T
Q  212 tcat 215  Q
    ||||    
T  6461531 tcat 6461534  T

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Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 215
Target Start/End: Complemental strand, 6497341 - 6497138
Alignment:
Q  15 atcacttctgaggccttttccggaataattcggataactttgttaccggattccaattcaaaaaatgaggatgttcttgataagtacagttcttgttacc 114  Q
    |||||||||||||||||||| ||  ||||||| ||  |||||||  || ||||||||||| ||||||| || |||||||| | ||  ||| |||||||||    
T  6497341 atcacttctgaggccttttctggtgtaattcgaattgctttgttgacgaattccaattcacaaaatgaagaagttcttgacatgtttagtacttgttacc 6497242  T
Q  115 ctttgtcaggtgaagctatgctcaaagaaccgtttagtgttgagtataagtttgagaagaaaggttca---ggtgatttactgatgttagcacaccctct 211  Q
    || |||| || || |||    |||| ||| | |||| | | |||||||| |  |||||||||||||||    |||||||  |||||||||| ||||||||    
T  6497241 ctgtgtctggcgacgcttcattcaatgaagcatttactatggagtataactgggagaagaaaggttcaagtagtgatttgttgatgttagctcaccctct 6497142  T
Q  212 tcat 215  Q
    ||||    
T  6497141 tcat 6497138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 314 - 367
Target Start/End: Complemental strand, 6526732 - 6526679
Alignment:
Q  314 atggcttttgaaaacagatcctgtttctattacttggcattcaagcaaaggtgt 367  Q
    |||| ||||||||||||||| ||||||| | |||||||||||||||||||||||    
T  6526732 atggattttgaaaacagatcttgtttctgtaacttggcattcaagcaaaggtgt 6526679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 207 - 286
Target Start/End: Complemental strand, 6526816 - 6526737
Alignment:
Q  207 cctcttcatctccagcttatgtctaaaagtgattccaatgctacctttttgagtgattttaagtataaaagcattgatgg 286  Q
    ||||| ||||| |||||| ||||||| |  ||||  |||| |||  ||||||||||||||||||||||| ||||||||||    
T  6526816 cctctccatctgcagcttttgtctaagaaagattgtaatgttactgttttgagtgattttaagtataaacgcattgatgg 6526737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 253 - 397
Target Start/End: Original strand, 35231196 - 35231343
Alignment:
Q  253 ttttgagtgattttaagtataaaagcattgatggtgaacttgttggagttgttg---gtgattcatggcttttgaaaacagatcctgtttctattacttg 349  Q
    |||||| ||||||||||||||||||||||||| ||||||||||||| |||||||   ||||| ||||||||||||||||  || |||||| | | |||||    
T  35231196 ttttgaatgattttaagtataaaagcattgatagtgaacttgttggtgttgttggttgtgatccatggcttttgaaaaccaattctgtttttgtaacttg 35231295  T
Q  350 gcattcaagcaaaggtgtaaaagaagaatcacatgacgaaattgtttc 397  Q
    ||| |  |  || ||||| |||||||||| |||| | |||||||||||    
T  35231296 gcactttataaatggtgttaaagaagaattacattatgaaattgtttc 35231343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 260 - 397
Target Start/End: Complemental strand, 4046646 - 4046509
Alignment:
Q  260 tgattttaagtataaaagcattgatggtgaacttgttggagttgttggtgattcatggcttttgaaaacagatcctgtttctattacttggcattcaagc 359  Q
    ||||||||||||||||||  |||||||||| |||||||| ||||||||  ||||||||  ||||||||| ||| |||||  | | || ||||||||||      
T  4046646 tgattttaagtataaaagtgttgatggtgatcttgttggtgttgttggaaattcatggaatttgaaaactgattctgttaatgtaacatggcattcaaat 4046547  T
Q  360 aaaggtgtaaaagaagaatcacatgacgaaattgtttc 397  Q
    ||||||||   | |||||||| |||  |||||||||||    
T  4046546 aaaggtgttgcaaaagaatcaaatgctgaaattgtttc 4046509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 263 - 298
Target Start/End: Original strand, 9665067 - 9665102
Alignment:
Q  263 ttttaagtataaaagcattgatggtgaacttgttgg 298  Q
    ||||||||||||||||||||||||||| ||||||||    
T  9665067 ttttaagtataaaagcattgatggtgatcttgttgg 9665102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 15 - 125
Target Start/End: Original strand, 9664819 - 9664929
Alignment:
Q  15 atcacttctgaggccttttccggaataattcggataactttgttaccggattccaattcaaaaaatgaggatgttcttgataagtacagttcttgttacc 114  Q
    ||||||||||| || ||||  ||  ||||| ||||  ||||||| ||||||||  ||||||||||||| | ||||||||| ||||  ||  |||||||||    
T  9664819 atcacttctgaagcattttgtggtgtaattaggattgctttgttgccggattctgattcaaaaaatgaagctgttcttgacaagtttagcacttgttacc 9664918  T
Q  115 ctttgtcaggt 125  Q
    |||| ||||||    
T  9664919 ctttatcaggt 9664929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 283
Target Start/End: Complemental strand, 49569812 - 49569685
Alignment:
Q  159 tataagtttgagaagaaaggttcaggtgatttactgatgttagcac---accctcttcatctccagcttatgtctaaaagtgattccaatgctacctttt 255  Q
    ||||| ||||||||||||||||||  ||||||||  |||||||||    | ||||||||||| ||||||   ||| |||  |||||||||| |||  |||    
T  49569812 tataactttgagaagaaaggttcaactgatttaccaatgttagcaacatatcctcttcatcttcagctttattcttaaaaagattccaatgttactgttt 49569713  T
Q  256 tgagtgattttaagtataaaagcattga 283  Q
     |||| ||||||||||||||||||||||    
T  49569712 ggagtaattttaagtataaaagcattga 49569685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 263 - 298
Target Start/End: Original strand, 13536091 - 13536126
Alignment:
Q  263 ttttaagtataaaagcattgatggtgaacttgttgg 298  Q
    ||||||||||||||||||||||||||| ||||||||    
T  13536091 ttttaagtataaaagcattgatggtgatcttgttgg 13536126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 15 - 125
Target Start/End: Original strand, 13535843 - 13535953
Alignment:
Q  15 atcacttctgaggccttttccggaataattcggataactttgttaccggattccaattcaaaaaatgaggatgttcttgataagtacagttcttgttacc 114  Q
    ||||||||||| || ||||  ||  ||||| ||||  ||||||| ||||||||  ||||||||||||| | ||||||||| ||||  ||  |||||||||    
T  13535843 atcacttctgaagcattttgtggtgtaattaggattgctttgttgccggattctgattcaaaaaatgaagctgttcttgacaagtttagcacttgttacc 13535942  T
Q  115 ctttgtcaggt 125  Q
    |||| ||||||    
T  13535943 ctttatcaggt 13535953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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