View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17195_low_18 (Length: 410)
Name: NF17195_low_18
Description: NF17195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17195_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 31 - 398
Target Start/End: Original strand, 7284993 - 7285360
Alignment:
| Q |
31 |
aagggtttatgtctctaattacggcttcctccacttcaacatggaaactcatcttcacaatttaacttgcgagttataacccattaaaagctagaatctt |
130 |
Q |
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| T |
7284993 |
aaggctttatgtctctaattacggcttcctccacttcaacatggaaactcatcttcacaatttaacttgcgagttataacccattaaaagctagaatctt |
7285092 |
T |
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| Q |
131 |
gaagatgaagaaatgtagaaaacaaatacctagagaattgattttaaggccatcattgatgtgcttcatgtggccattgagaccacataacttaacacca |
230 |
Q |
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| T |
7285093 |
gaagatgaagaaatgtagaaaacaaatacctagagaattgattttaaggccatcattgatgtgcttcatgtggccattgagaccacataacttaacacca |
7285192 |
T |
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| Q |
231 |
aacacaatgatatcagtttataacattaaactctataccccattaaatataaatattataattcccaaagaaaaaactctactctctgcaccattatata |
330 |
Q |
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| T |
7285193 |
aacacaatgatatcagtttataacattaaactctataccccattaaatataaatattataattcccaaagaaaaaactctactctctgcaccattatata |
7285292 |
T |
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| Q |
331 |
tagtatcatggaaaacttaaaaactcccacattaggcaaacatgatttcaaaattcttcaatagccta |
398 |
Q |
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| T |
7285293 |
tagtatcatggaaaacttaaaaactcccacatcaggcaaacatgatttcaaaattcttcaatagccta |
7285360 |
T |
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