View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17195_low_19 (Length: 409)
Name: NF17195_low_19
Description: NF17195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17195_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 6 - 394
Target Start/End: Complemental strand, 41963852 - 41963464
Alignment:
| Q |
6 |
agaagcataggacatagctgcaatcaagttcagaggattaaacgcagtaacaaactttgacatgaatcgttacgacgtgaaagcgattcttgaaagtatc |
105 |
Q |
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| T |
41963852 |
agaagcatatgacatagctgcaatcaaattcagaggattaaacgcagtaacaaactttgacatgaatcgttacgacgtgaaagcgattcttgaaagtatc |
41963753 |
T |
|
| Q |
106 |
actctcccaataggaggaggtgctgcaaaaagattaaaagaagcacaagctctagaatcttctagaaaaagggaacaagagatgatatcactagcaggct |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41963752 |
actctcccaataggaggaggtgctgcaaaaagattaaaagaagcacaagctctagaatcttctagaaaaagggaacaagagatgatatcactagcaggct |
41963653 |
T |
|
| Q |
206 |
caacttttcaatatggaatatcctcaaattcaagtaggatacaattacaaggttaccctttaatgcagtttgaacaacatgcacaacaaaacctatatga |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41963652 |
caacttttcaatatggaatatcctcaaattcaagtaggatacaattacaaggttaccctttaatgcagtttgaacaacatgcacaacaaaacctatatga |
41963553 |
T |
|
| Q |
306 |
tagtagtactcaagatacaacgtcgtttgatcatcagagttatatacaaactcagcttcagttacaacaacaacaaagtggaggattct |
394 |
Q |
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| T |
41963552 |
tagtagtactcaagatacaacgtcgtttgatcatcagagttatatacaaactcagcttcagttacaacaacaacaaagtggaggattct |
41963464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 93; Significance: 4e-45; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 6 - 174
Target Start/End: Complemental strand, 24561725 - 24561557
Alignment:
| Q |
6 |
agaagcataggacatagctgcaatcaagttcagaggattaaacgcagtaacaaactttgacatgaatcgttacgacgtgaaagcgattcttgaaagtatc |
105 |
Q |
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||||||||| |||||||| ||||| || ||||||||| | ||||| ||||||||||||||||||| |||||||||||||||||| ||||| ||||| | | |
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| T |
24561725 |
agaagcatacgacatagcagcaataaaattcagaggactcaacgctgtaacaaactttgacatgactcgttacgacgtgaaagccattctcgaaagcaac |
24561626 |
T |
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| Q |
106 |
actctcccaataggaggaggtgctgcaaaaagattaaaagaagcacaagctctagaatcttctagaaaa |
174 |
Q |
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|| || ||||| |||||||| |||||||||||| ||||||||||||||||||||||| |||| |||||| |
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| T |
24561625 |
acactgccaattggaggaggagctgcaaaaagactaaaagaagcacaagctctagaaacttcgagaaaa |
24561557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 83
Target Start/End: Complemental strand, 53233878 - 53233820
Alignment:
| Q |
25 |
gcaatcaagttcagaggattaaacgcagtaacaaactttgacatgaatcgttacgacgt |
83 |
Q |
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|||||||| || |||||| |||| ||||||||||| |||||||||| ||| |||||||| |
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| T |
53233878 |
gcaatcaaatttagaggactaaatgcagtaacaaattttgacatgagtcggtacgacgt |
53233820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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