View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17195_low_2 (Length: 726)
Name: NF17195_low_2
Description: NF17195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17195_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 426; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 189 - 704
Target Start/End: Complemental strand, 40416104 - 40415588
Alignment:
| Q |
189 |
gaaccacttatctaaaccatccggttttaaggggaatgggattttagtgaatatagaactcgggaggtaaataaagtttaattaagattgtttcaaccag |
288 |
Q |
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| T |
40416104 |
gaaccacttatctaaaccatccggttttcaggggaatgggattttagtgaatatagaattcgggaggtaaataaagtttaattaagattgtttcaaccag |
40416005 |
T |
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| Q |
289 |
aattcgaacttaatttctctggaacaattcatcccaactatctttgatggtctcannnnnnnatataaaatcttaaatttcatgatataatgttgcaggt |
388 |
Q |
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| T |
40416004 |
aattcaaacttaatttctctggaacaattcatcccaactatctttgatggtctcatttttttatataaaatcttaaatttcatgatataatgttgcaggt |
40415905 |
T |
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| Q |
389 |
aattagcatggagtggggaaacttcaattcctctcatgttcctctaacatcgtttgacactattttagatgctgaaagctcaaatcctggaagtggggta |
488 |
Q |
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| T |
40415904 |
aattagcatggagtggggaaacttcaattcctctcatgttcctctaacatcgtttgacactattttagatgctgaaagctcaaattctggaagtggggta |
40415805 |
T |
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| Q |
489 |
tattataaactaaattcaatattgataatttatcttgatatctagaattgatccctgaa-nnnnnnnnnnccttcccttttctcttagatttttgaaaag |
587 |
Q |
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| T |
40415804 |
tattataaactaaattcactattgataatttatcttgatatctagaattgatccctgaatttttttttttccttcctttttctcttagatttttgaaaag |
40415705 |
T |
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| Q |
588 |
cttatttcaggaatgtatttaggagaaattttgagacacgttctgttgaagatggcacaagaaacagctctatttggaggcagcgtgcctccaaaattga |
687 |
Q |
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| T |
40415704 |
cttatttcaggaatgtatttaggagaaattgtgagacacgttctgttgaagatggcacaagaaacagccctatttggaggcagcgtgcctccaaaattga |
40415605 |
T |
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| Q |
688 |
tgactccatactcacta |
704 |
Q |
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| T |
40415604 |
tgactccatactcacta |
40415588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 133; E-Value: 9e-69
Query Start/End: Original strand, 14 - 154
Target Start/End: Complemental strand, 40416279 - 40416139
Alignment:
| Q |
14 |
agacaatgtggcttcaataactcttggtatgagcacaaatgctgcttatgttgaaccagcacaagaaagtgagcttgcacgatctcccaattcaaatgaa |
113 |
Q |
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| T |
40416279 |
agacaatgtggctgcaataactcttggtatgagcacaaatgctgcttatgttgaaccagcacaagaaagtgagcttgcacgatctcccaattcaaatgaa |
40416180 |
T |
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| Q |
114 |
cttgttagtgactgccatagtctttacattgttttttacgc |
154 |
Q |
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| T |
40416179 |
ctggttagtgactgccatagtctttacattgttttttacgc |
40416139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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