View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17195_low_20 (Length: 376)
Name: NF17195_low_20
Description: NF17195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17195_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 120; Significance: 3e-61; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 3022620 - 3022821
Alignment:
| Q |
1 |
tgaagaagtcaaaacaacataatttttcgctagaaagagattgggtgatggatttttaannnnnnnnnngttgatttcaaagaaaatgtttatttgccat |
100 |
Q |
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| T |
3022620 |
tgaagaattcaaaactacataatttttcggtagaaagtgattgtgtgttggtttttttattttttttt-gttgatttcaaagaaaatattaatttgccat |
3022718 |
T |
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| Q |
101 |
tagttgataaaagaattgtaatataataaaaatagattgatttctttttcacaagataaaaagagattattgatttgataacaagatattgaatatgtaa |
200 |
Q |
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| T |
3022719 |
tagttgataaaagaattgtaatatgataaaaagagattgatttctttttcacaagataaaaagagattattgatttgataacaagatattgaatatgtaa |
3022818 |
T |
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| Q |
201 |
aat |
203 |
Q |
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||| |
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| T |
3022819 |
aat |
3022821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 362
Target Start/End: Original strand, 3023139 - 3023186
Alignment:
| Q |
315 |
ctaagcagccctgataccaaatttgaaggaagatggtagtggtctgtg |
362 |
Q |
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| T |
3023139 |
ctaagcagccatgatatcaaatttgaaggaagatgatagtggtttgtg |
3023186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 251
Target Start/End: Original strand, 3023024 - 3023069
Alignment:
| Q |
206 |
aaaaacaacatagataaatggcccaagtagataaatagaaaagtgc |
251 |
Q |
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| T |
3023024 |
aaaaacaacatagataaatggtccaattagataaacagacaagtgc |
3023069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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