View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17195_low_21 (Length: 355)
Name: NF17195_low_21
Description: NF17195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17195_low_21 |
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Alignment Details
Target: chr6 (Bit Score: 139; Significance: 1e-72; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 11 - 259
Target Start/End: Original strand, 18346111 - 18346358
Alignment:
| Q |
11 |
aagaagaaaggaatgggtcaaatttnnnnnnngaagaaacgaatggttcatcaacatactgattttgaatatatagaagaaatgattgttgttgtttgtg |
110 |
Q |
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|||||||||||||||||||| |||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
18346111 |
aagaagaaaggaatgggtcagatttaaaaaaagaagaaacgaatggttcaccaacataatgattttgaatatatagaagaaatgattgttgttgtttgtg |
18346210 |
T |
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| Q |
111 |
ttttgatatggggaaacgatgaacccaaggaagaaaagaaggnnnnnnnncgtgttttgaaatctaatctatgagaaatagattttgaaaagnnnnnnnn |
210 |
Q |
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| T |
18346211 |
ttttgatatggggaaacgatgaacccaaggaagaaaagaagaaaaaaaaacgtgttttgaaatctaatctatgagaaatagatttcgaaaa---aaaaaa |
18346307 |
T |
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| Q |
211 |
ccataatctggag--agaaaattaaatccgaattcatgtgtgatgaatttg |
259 |
Q |
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||||||||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
18346308 |
ccataatctggagaaaaaaaattaaatccgaattcatgtgtgatgaatttg |
18346358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 126; Significance: 6e-65; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 11 - 259
Target Start/End: Complemental strand, 49802374 - 49802125
Alignment:
| Q |
11 |
aagaagaaaggaatgggtcaaatttnnnnnnngaagaaacgaatggttcatcaacatactgattttgaatatatagaagaaatgattgttgttgtttgtg |
110 |
Q |
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| T |
49802374 |
aagaagaaaggaatgggtcagatttaaaaaaagaagaaacgaatggttcaccaacataatgattttgaatatatagaagaaatgattgttgttgtttgtg |
49802275 |
T |
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| Q |
111 |
ttttgatatggggaaacgatgaacccaaggaagaaaagaa----ggnnnnnnnncgtgttttgaaatctaatctatgagaaatagattttgaaaagnnnn |
206 |
Q |
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| T |
49802274 |
ttttgatatggggaaacgatgaacccaaggaagaaaagaagaaggaaaaaaaaacgtgttttgaaatctaatctatgagaaatagatttcgaaaa----- |
49802180 |
T |
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| Q |
207 |
nnnnccataatctggagagaaa--attaaatccgaattcatgtgtgatgaatttg |
259 |
Q |
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| T |
49802179 |
aaaaccataatctggagagaaaagattaaatccaaattcatgtgtgatgaatttg |
49802125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 116; Significance: 6e-59; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 11 - 259
Target Start/End: Complemental strand, 26887027 - 26886772
Alignment:
| Q |
11 |
aagaagaaaggaatgggtcaaatttnnnnnnngaagaaacgaatggttcatcaacatactgattttgaatatatagaagaaatgattgttgttgtttgtg |
110 |
Q |
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|||||||||||||||||||| |||| ||| |||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||| |
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| T |
26887027 |
aagaagaaaggaatgggtcagatttaaaaaaagaaaaaacgaatggttcaccaacatactgatttcgaatatatagaagaaatgaatgttgttgtttgtg |
26886928 |
T |
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| Q |
111 |
ttttgatatggggaaacgatgaacccaaggaagaaaagaag----gnnnnnnnncgtgttttgaaatctaatctatgagaaatagattttgaaaagnnnn |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
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| T |
26886927 |
ttttgatatggggaaacgatgaacccaaggaagaaaagaagaagaaaaagaaaacgtgttttgaaatctaatctatgagaaatggattttgaaaaaaaaa |
26886828 |
T |
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| Q |
207 |
nnnnccataatctggagagaa---aattaaatccgaattcatgtgtgatgaatttg |
259 |
Q |
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||||||| ||||||||| ||||||||| |||||||||||||||||||||| |
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| T |
26886827 |
aaaaccataatttggagagaaaagaattaaatctgaattcatgtgtgatgaatttg |
26886772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 43 - 259
Target Start/End: Complemental strand, 22538294 - 22538068
Alignment:
| Q |
43 |
gaagaaacgaatggttcatcaacatactgattttgaatatatagaagaaatgattgttgttgtttgtgttttgatatggggaaacgatgaacccaaggaa |
142 |
Q |
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|||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22538294 |
gaagaaacgaatggttcaccaacatactgatttcgaatatatagaagaaatgaatgttgttgtttgtgttttgatatggggaaacgatgaacccaaggaa |
22538195 |
T |
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| Q |
143 |
gaaaagaag----gnnnnnnnncgtgttttgaaatctaatctatgagaaatagattttgaaaag---nnnnnnnnccataatctggagagaa---aatta |
232 |
Q |
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||||||||| ||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||| ||||| |
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| T |
22538194 |
gaaaagaagaagaagaaaaaaacgtgttttgaaatctaatctatgagaaatggatttcgaaaagaaaaaaaaaaaccataatctggagagaaaagaatta |
22538095 |
T |
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| Q |
233 |
aatccgaattcatgtgtgatgaatttg |
259 |
Q |
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|||| |||||||||||||||||||||| |
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| T |
22538094 |
aatctgaattcatgtgtgatgaatttg |
22538068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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