View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17195_low_22 (Length: 342)

Name: NF17195_low_22
Description: NF17195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17195_low_22
NF17195_low_22
[»] chr1 (1 HSPs)
chr1 (8-325)||(1716455-1716770)
[»] chr3 (8 HSPs)
chr3 (226-323)||(19837832-19837929)
chr3 (226-323)||(19955520-19955617)
chr3 (226-323)||(19848444-19848541)
chr3 (226-325)||(19818005-19818104)
chr3 (223-308)||(20016784-20016872)
chr3 (226-317)||(19811731-19811822)
chr3 (226-308)||(19988979-19989061)
chr3 (215-325)||(20045563-20045673)
[»] chr7 (4 HSPs)
chr7 (222-325)||(12581237-12581340)
chr7 (222-325)||(12497054-12497157)
chr7 (222-325)||(12520919-12521022)
chr7 (222-325)||(12580251-12580354)
[»] chr5 (1 HSPs)
chr5 (226-308)||(26355512-26355594)


Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 8 - 325
Target Start/End: Original strand, 1716455 - 1716770
Alignment:
Q  8 agcaataccaacaaacgacaaaacaaaatatacctaggccgtcacaaattagttacaacaatgttactgtgaagctactatttttctactcaaaatttgg 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  1716455 agcaataccaacaaacgacaaaacaaaatatacctaggccgtcacaaattagttacaacaatgtttctgtgaagctactatttttctactcaaaatttgg 1716554  T
Q  108 ctcaaagttttcaaagcaaccatttttcacattctcattctcagtttcttaacaaagatttgagctttttgaagaatatagtgtcaaactcaaacccatg 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  1716555 ctcaaagttttcaaagcaaccatttttcacattctcattctcagtttcttaacaaagatttgagctttttgaaga--atagtgtcaaactcaaacccatg 1716652  T
Q  208 atgaacaaagacaccatcatggaggtgagggaagatttcatgctttcacctggttgtgagaatgaaccaacattcagaacagcccattttctcaaaccca 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1716653 atgaacaaagacaccatcatggaggtgagggaagatttcatgctttcacctggttgtgagaatgaaccaacattcagaacagcccattttctcaaaccca 1716752  T
Q  308 tagcaaactctattgatg 325  Q
     |||||||||||||||||    
T  1716753 cagcaaactctattgatg 1716770  T

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Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 226 - 323
Target Start/End: Original strand, 19837832 - 19837929
Alignment:
Q  226 atggaggtgagggaagatttcatgctttcacctggttgtgagaatgaaccaacattcagaacagcccattttctcaaacccatagcaaactctattga 323  Q
    ||||||||||||||||||||||||||||||| || | |||| | |||| ||||| ||||||| ||||||||||| ||||| || |||||||| |||||    
T  19837832 atggaggtgagggaagatttcatgctttcacttgctggtgatagtgaagcaacactcagaactgcccattttcttaaacctattgcaaactccattga 19837929  T

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Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 226 - 323
Target Start/End: Original strand, 19955520 - 19955617
Alignment:
Q  226 atggaggtgagggaagatttcatgctttcacctggttgtgagaatgaaccaacattcagaacagcccattttctcaaacccatagcaaactctattga 323  Q
    ||||||||||||||||| |||||||||||||| | | |||| | ||| |||||| ||||||||||||||||||| ||||||||  ||||||| |||||    
T  19955520 atggaggtgagggaagagttcatgctttcaccagctggtgatagtgatccaacactcagaacagcccattttcttaaacccatttcaaactccattga 19955617  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 226 - 323
Target Start/End: Original strand, 19848444 - 19848541
Alignment:
Q  226 atggaggtgagggaagatttcatgctttcacctggttgtgagaatgaaccaacattcagaacagcccattttctcaaacccatagcaaactctattga 323  Q
    |||||||||||||||||||||||||||||||| | | |||| | | | |||  | |||||||||| |||||||||||||||||  ||||||| |||||    
T  19848444 atggaggtgagggaagatttcatgctttcaccagctggtgatagtcacccacaactcagaacagctcattttctcaaacccatttcaaactccattga 19848541  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 226 - 325
Target Start/End: Original strand, 19818005 - 19818104
Alignment:
Q  226 atggaggtgagggaagatttcatgctttcacctggttgtgagaatgaaccaacattcagaacagcccattttctcaaacccatagcaaactctattgatg 325  Q
    |||||||| || |||||||||||||||||||||| | |||| | ||| |||||| ||||||| || ||||||||||| ||  | |||||||| |||||||    
T  19818005 atggaggttagagaagatttcatgctttcacctgctggtgacagtgatccaacactcagaactgctcattttctcaagcctgttgcaaactccattgatg 19818104  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 308
Target Start/End: Complemental strand, 20016872 - 20016784
Alignment:
Q  223 atcatggaggtgagggaagatttcatgctttcac---ctggttgtgagaatgaaccaacattcagaacagcccattttctcaaacccat 308  Q
    ||||||||||||||||||||||||||||| ||||   ||||| |||| | |||| ||||  ||||||| ||||||||| | ||||||||    
T  20016872 atcatggaggtgagggaagatttcatgctctcacctgctggtggtgacactgaagcaactctcagaactgcccattttttaaaacccat 20016784  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 226 - 317
Target Start/End: Original strand, 19811731 - 19811822
Alignment:
Q  226 atggaggtgagggaagatttcatgctttcacctggttgtgagaatgaaccaacattcagaacagcccattttctcaaacccatagcaaactc 317  Q
    ||||| || ||||||||||||||||||||||||  | |||| | |||  |||| |||||||| || |||||||| ||||||||  |||||||    
T  19811731 atggaagtcagggaagatttcatgctttcaccttctggtgacagtgattcaactttcagaactgctcattttcttaaacccatttcaaactc 19811822  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 308
Target Start/End: Original strand, 19988979 - 19989061
Alignment:
Q  226 atggaggtgagggaagatttcatgctttcacctggttgtgagaatgaaccaacattcagaacagcccattttctcaaacccat 308  Q
    |||||||||| |||||||  |||||||||||| | | |||| | ||||||||   ||||||  ||||||||||||||||||||    
T  19988979 atggaggtgaaggaagatcacatgctttcaccagctggtgacagtgaaccaattctcagaatcgcccattttctcaaacccat 19989061  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 325
Target Start/End: Original strand, 20045563 - 20045673
Alignment:
Q  215 aagacaccatcatggaggtgagggaagatttcatgctttcacctggttgtgagaatgaaccaacattcagaacagcccattttctcaaacccatagcaaa 314  Q
    |||| ||||| |||||||||| ||||||||| ||||||||||||  | |||| | |||||||||  | ||||| || || || |||||||| || |||||    
T  20045563 aagataccattatggaggtgaaggaagattttatgctttcacctaatggtgatagtgaaccaactcttagaacggctcacttactcaaacctattgcaaa 20045662  T
Q  315 ctctattgatg 325  Q
     || |||||||    
T  20045663 ttcaattgatg 20045673  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 222 - 325
Target Start/End: Complemental strand, 12581340 - 12581237
Alignment:
Q  222 catcatggaggtgagggaagatttcatgctttcacctggttgtgagaatgaaccaacattcagaacagcccattttctcaaacccatagcaaactctatt 321  Q
    |||||||||||||| |||| |||||||||||||| ||| | |||| | |||||||||  | | |||||||||||| |||||||| || ||||| || |||    
T  12581340 catcatggaggtgaaggaaaatttcatgctttcaactgttggtgatagtgaaccaactcttaaaacagcccatttactcaaacctattgcaaattccatt 12581241  T
Q  322 gatg 325  Q
    ||||    
T  12581240 gatg 12581237  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 222 - 325
Target Start/End: Complemental strand, 12497157 - 12497054
Alignment:
Q  222 catcatggaggtgagggaagatttcatgctttcacctggttgtgagaatgaaccaacattcagaacagcccattttctcaaacccatagcaaactctatt 321  Q
    |||||||||||||| |||| ||| |||||||||| ||| | |||| | |||||||||  | | |||| ||||||| |||||||| || ||||| || |||    
T  12497157 catcatggaggtgaaggaatattgcatgctttcaactgttggtgatagtgaaccaactcttaaaacaacccatttactcaaacctattgcaaattccatt 12497058  T
Q  322 gatg 325  Q
    ||||    
T  12497057 gatg 12497054  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 222 - 325
Target Start/End: Complemental strand, 12521022 - 12520919
Alignment:
Q  222 catcatggaggtgagggaagatttcatgctttcacctggttgtgagaatgaaccaacattcagaacagcccattttctcaaacccatagcaaactctatt 321  Q
    |||||||||||||| |||| ||| |||||||||| ||| | |||| | |||||||||  | | |||| ||||||| |||||||| || ||||| || |||    
T  12521022 catcatggaggtgaaggaatattgcatgctttcaactgttggtgatagtgaaccaactcttaaaacaacccatttactcaaacctattgcaaattccatt 12520923  T
Q  322 gatg 325  Q
    ||||    
T  12520922 gatg 12520919  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 222 - 325
Target Start/End: Original strand, 12580251 - 12580354
Alignment:
Q  222 catcatggaggtgagggaagatttcatgctttcacctggttgtgagaatgaaccaacattcagaacagcccattttctcaaacccatagcaaactctatt 321  Q
    |||||||||||||| ||||||||||||||| ||| |   | |||| |||||||||||  | |||||| || |||| |||||||| || ||||| || |||    
T  12580251 catcatggaggtgatggaagatttcatgctctcagcaactagtgataatgaaccaactcttagaacaaccaatttactcaaacctattgcaaattccatt 12580350  T
Q  322 gatg 325  Q
    ||||    
T  12580351 gatg 12580354  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 226 - 308
Target Start/End: Complemental strand, 26355594 - 26355512
Alignment:
Q  226 atggaggtgagggaagatttcatgctttcacctggttgtgagaatgaaccaacattcagaacagcccattttctcaaacccat 308  Q
    ||||||| |||||||||||||||||| ||||| | | || | | |||| |||| ||||||| |||||||||||| ||||||||    
T  26355594 atggaggagagggaagatttcatgctctcaccagatggtcacagtgaagcaactttcagaatagcccattttctaaaacccat 26355512  T

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