View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17195_low_23 (Length: 322)

Name: NF17195_low_23
Description: NF17195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17195_low_23
NF17195_low_23
[»] scaffold0256 (2 HSPs)
scaffold0256 (65-322)||(10980-11235)
scaffold0256 (18-66)||(10880-10928)
[»] chr6 (9 HSPs)
chr6 (100-322)||(16977307-16977530)
chr6 (164-322)||(16580485-16580643)
chr6 (164-322)||(16614737-16614895)
chr6 (164-322)||(16874345-16874504)
chr6 (164-278)||(16572510-16572624)
chr6 (18-66)||(16572781-16572829)
chr6 (18-66)||(16580802-16580850)
chr6 (18-66)||(16614530-16614578)
chr6 (18-66)||(16874663-16874711)
[»] chr2 (3 HSPs)
chr2 (84-322)||(21629243-21629478)
chr2 (72-313)||(233460-233701)
chr2 (19-66)||(21629549-21629596)
[»] chr1 (2 HSPs)
chr1 (72-313)||(7391794-7392035)
chr1 (18-64)||(7392096-7392142)
[»] chr7 (1 HSPs)
chr7 (75-313)||(48298579-48298817)


Alignment Details
Target: scaffold0256 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 65 - 322
Target Start/End: Original strand, 10980 - 11235
Alignment:
Q  65 atagcaagaacacgaagaggagagaggtcgaaataattttctagctgatccatgctaaaagaatcgtatgatgaagaggaggtaaataagtatgtcctaa 164  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |  ||||||||||||||||||||||||||||||||||||||||    
T  10980 atagcatgaacacgaagaggagagaggtcgaaataattttctagctgatccacgctca--gaatcgtatgatgaagaggaggtaaataagtatgtcctaa 11077  T
Q  165 gtgccacctctttgattttgtccttcagcatttcgagcgtggagtcgtggtttttcacaaatttccatacgttaagagatgcaatatagtcaaaagcatt 264  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||| ||||||||||||| |  |||||||||||||||||||||||||||    
T  11078 gtgccacctctttgattttgtccttcagcatttcgagcacggagtcgtggttttttacaaatttccatatgccaagagatgcaatatagtcaaaagcatt 11177  T
Q  265 gtggaagtctccattgataagaagccttgtgacaaccatgacatgatccttaacattt 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11178 gtggaagtctccattgataagaagccttgtgacaaccatgacatgatccttaacattt 11235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 10880 - 10928
Alignment:
Q  18 agcctgcacccttgagtgttcaacattttggaacacaatgcatccagat 66  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  10880 agcctgcacccttgagtgttcaacattttggaacacaatgcatccagat 10928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 104; Significance: 8e-52; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 100 - 322
Target Start/End: Original strand, 16977307 - 16977530
Alignment:
Q  100 attttctagctgatccatgctaaaagaatcgtatgatgaagaggaggtaaataagtatgtcctaagtgccacctctttgattttgtcc-ttcagcatttc 198  Q
    |||| ||||||||||||  ||  ||||||| | |||||||| ||||||||||| |||||||||||||| | |||| |||||||| ||| |||||||| ||    
T  16977307 atttgctagctgatccactctctaagaatcatgtgatgaaggggaggtaaataggtatgtcctaagtgtctcctccttgattttttcccttcagcatctc 16977406  T
Q  199 gagcgtggagtcgtggtttttcacaaatttccatacgttaagagatgcaatatagtcaaaagcattgtggaagtctccattgataagaagccttgtgaca 298  Q
     | |  ||||||  | |||||||||||||||||||||| |||||||||||||| ||||||||| ||||| ||||| ||||| |||||||||||||| |||    
T  16977407 taacagggagtctcgttttttcacaaatttccatacgtcaagagatgcaatattgtcaaaagccttgtgcaagtccccattcataagaagccttgttaca 16977506  T
Q  299 accatgacatgatccttaacattt 322  Q
    ||||||||||||||||||||||||    
T  16977507 accatgacatgatccttaacattt 16977530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 164 - 322
Target Start/End: Complemental strand, 16580643 - 16580485
Alignment:
Q  164 agtgccacctctttgattttgtccttcagcatttcgagcgtggagtcgtggtttttcacaaatttccatacgttaagagatgcaatatagtcaaaagcat 263  Q
    |||||| |||| ||| |||||||||||| |||||| |||  || ||   | ||||||||||||| |||||| | |||||||||||||| |||| |||| |    
T  16580643 agtgcctcctccttggttttgtccttcaacatttctagcacggcgtttcgatttttcacaaattaccatacatcaagagatgcaatattgtcacaagcct 16580544  T
Q  264 tgtggaagtctccattgataagaagccttgtgacaaccatgacatgatccttaacattt 322  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  16580543 tgtggaagtctccattgataagaagcattgtgacaaccatgacatgatccttaacattt 16580485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 164 - 322
Target Start/End: Original strand, 16614737 - 16614895
Alignment:
Q  164 agtgccacctctttgattttgtccttcagcatttcgagcgtggagtcgtggtttttcacaaatttccatacgttaagagatgcaatatagtcaaaagcat 263  Q
    |||||| |||| ||| |||||||||||| |||||| |||  || ||   | ||||||||||||| |||||| | |||||||||||||| |||| |||| |    
T  16614737 agtgcctcctccttggttttgtccttcaacatttctagcacggcgtttcgatttttcacaaattaccatacatcaagagatgcaatattgtcacaagcct 16614836  T
Q  264 tgtggaagtctccattgataagaagccttgtgacaaccatgacatgatccttaacattt 322  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  16614837 tgtggaagtctccattgataagaagcattgtgacaaccatgacatgatccttaacattt 16614895  T

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Target: chr6; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 164 - 322
Target Start/End: Complemental strand, 16874504 - 16874345
Alignment:
Q  164 agtgccacctctttgattttgtccttcagcatttcgagcgtggagtcgtggtttttcacaaatttccatacgttaa-gagatgcaatatagtcaaaagca 262  Q
    |||||| |||| ||| |||||||||||| |||||| |||  || ||| || |||||||||||||||||||| | || |||||||||||  |||| ||||     
T  16874504 agtgcctcctccttggttttgtccttcaacatttccagcacggcgtcttgatttttcacaaatttccatacatcaaagagatgcaataatgtcacaagcc 16874405  T
Q  263 ttgtggaagtctccattgataagaagccttgtgacaaccatgacatgatccttaacattt 322  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  16874404 ttgtggaagtctccattgataagaagcattgtgacaaccatgacatgatccataacattt 16874345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 164 - 278
Target Start/End: Complemental strand, 16572624 - 16572510
Alignment:
Q  164 agtgccacctctttgattttgtccttcagcatttcgagcgtggagtcgtggtttttcacaaatttccatacgttaagagatgcaatatagtcaaaagcat 263  Q
    |||||| |||| ||| |||||||||||| |||||| |||  ||  ||  | |||||||||||||||||||| | |||||||||||||  ||||||||| |    
T  16572624 agtgcctcctccttggttttgtccttcaacatttctagcacggcatctcgatttttcacaaatttccatacatcaagagatgcaataatgtcaaaagcct 16572525  T
Q  264 tgtggaagtctccat 278  Q
    ||||||| |||||||    
T  16572524 tgtggaattctccat 16572510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 16572829 - 16572781
Alignment:
Q  18 agcctgcacccttgagtgttcaacattttggaacacaatgcatccagat 66  Q
    |||||||||| | ||| ||||||||||| ||||||||||||| ||||||    
T  16572829 agcctgcaccatagagggttcaacatttcggaacacaatgcacccagat 16572781  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 16580850 - 16580802
Alignment:
Q  18 agcctgcacccttgagtgttcaacattttggaacacaatgcatccagat 66  Q
    |||||||||| | ||| ||||||||||| ||||||||||||| ||||||    
T  16580850 agcctgcaccatagagggttcaacatttcggaacacaatgcacccagat 16580802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 16614530 - 16614578
Alignment:
Q  18 agcctgcacccttgagtgttcaacattttggaacacaatgcatccagat 66  Q
    |||||||||| | ||| ||||||||||| ||||||||||||| ||||||    
T  16614530 agcctgcaccatagagggttcaacatttcggaacacaatgcacccagat 16614578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 16874711 - 16874663
Alignment:
Q  18 agcctgcacccttgagtgttcaacattttggaacacaatgcatccagat 66  Q
    |||||||||| | ||| ||||||||||| ||||||||||||| ||||||    
T  16874711 agcctgcaccatagagagttcaacatttcggaacacaatgcacccagat 16874663  T

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Target: chr2 (Bit Score: 101; Significance: 5e-50; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 84 - 322
Target Start/End: Complemental strand, 21629478 - 21629243
Alignment:
Q  84 gagagaggtcgaaataattttctagctgatccatgctaaaagaatcgtatgatgaagaggaggtaaataagtatgtcctaagtgccacctctttgatttt 183  Q
    |||||||||||||||  ||| | |||||||||||||| ||||| || |||||||||||| |||||| || |||||||||||||||| |||| ||||||||    
T  21629478 gagagaggtcgaaattttttgcgagctgatccatgctcaaagattcatatgatgaagagaaggtaattaggtatgtcctaagtgcctcctccttgatttt 21629379  T
Q  184 gtccttcagcatttcgagcgtggagtcgtggtttttcacaaatttccatacgttaagagatgcaatatagtcaaaagcattgtggaagtctccattgata 283  Q
    ||||||||   |||| |||  ||||||   || |||||||||||||||||| |  ||||||||||||| |||||| || ||| ||||||||||||| |||    
T  21629378 gtccttca---tttctagcacggagtctcagtgtttcacaaatttccatacatcgagagatgcaatattgtcaaaggccttgaggaagtctccattaata 21629282  T
Q  284 agaagccttgtgacaaccatgacatgatccttaacattt 322  Q
    ||||| ||||||||| |||| ||||||||| ||||||||    
T  21629281 agaagtcttgtgacagccataacatgatccctaacattt 21629243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 72 - 313
Target Start/End: Original strand, 233460 - 233701
Alignment:
Q  72 gaacacgaagaggagagaggtcgaaataattttctagctgatccatgctaaaagaatcgtatgatgaagaggaggtaaataagtatgtcctaagtgccac 171  Q
    |||||||| || ||||||| |||||| |||||   ||||||||||  || |||||||| |||||||||||| | ||||||| |||||||||||| ||| |    
T  233460 gaacacgaggaagagagagatcgaaaaaatttgtgagctgatccacactcaaagaatcatatgatgaagagaaagtaaataggtatgtcctaagcgcctc 233559  T
Q  172 ctctttgattttgtccttcagcatttcgagcgtggagtcgtggtttttcacaaatttccatacgttaagagatgcaatatagtcaaaagcattgtggaag 271  Q
    ||| ||||||||||||||||||||||| |||  || |||  | ||||||||||||||||| || | |||||||||||||  |||||| || || |||||     
T  233560 ctccttgattttgtccttcagcatttctagcacggtgtcacgatttttcacaaatttccaaacctcaagagatgcaataatgtcaaaggccttctggaaa 233659  T
Q  272 tctccattgataagaagccttgtgacaaccatgacatgatcc 313  Q
    |||||||| ||||||| ||||||| || |||| |||||||||    
T  233660 tctccattaataagaacccttgtggcagccataacatgatcc 233701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 21629596 - 21629549
Alignment:
Q  19 gcctgcacccttgagtgttcaacattttggaacacaatgcatccagat 66  Q
    ||||||||||||||||||||||||||| |||| |||||||| ||||||    
T  21629596 gcctgcacccttgagtgttcaacatttcggaatacaatgcacccagat 21629549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 7e-46; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 72 - 313
Target Start/End: Complemental strand, 7392035 - 7391794
Alignment:
Q  72 gaacacgaagaggagagaggtcgaaataattttctagctgatccatgctaaaagaatcgtatgatgaagaggaggtaaataagtatgtcctaagtgccac 171  Q
    |||||||| || ||||||| |||||| |||||   |||||| ||| ||| |||||||| |||||||||||| ||||||||| |||||||||||||||| |    
T  7392035 gaacacgaggaagagagagatcgaaaaaatttgtgagctgaaccacgctcaaagaatcatatgatgaagagaaggtaaataggtatgtcctaagtgcctc 7391936  T
Q  172 ctctttgattttgtccttcagcatttcgagcgtggagtcgtggtttttcacaaatttccatacgttaagagatgcaatatagtcaaaagcattgtggaag 271  Q
     || |||||||||||||| |||||||| |||  || |||  | ||||||||||||||||| |||| |||||||||||||  |||||| || || |||||     
T  7391935 ttccttgattttgtccttaagcatttctagcacggcgtctcgatttttcacaaatttccagacgtcaagagatgcaataatgtcaaaggccttctggaaa 7391836  T
Q  272 tctccattgataagaagccttgtgacaaccatgacatgatcc 313  Q
    |||||||| ||||||| ||||||| || |||| |||||||||    
T  7391835 tctccattaataagaacccttgtggcagccataacatgatcc 7391794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 7392142 - 7392096
Alignment:
Q  18 agcctgcacccttgagtgttcaacattttggaacacaatgcatccag 64  Q
    |||||||||||||||||||||||||||| |||| | |||||| ||||    
T  7392142 agcctgcacccttgagtgttcaacatttcggaaaataatgcacccag 7392096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 75 - 313
Target Start/End: Original strand, 48298579 - 48298817
Alignment:
Q  75 cacgaagaggagagaggtcgaaataattttctagctgatccatgctaaaagaatcgtatgatgaagaggaggtaaataagtatgtcctaagtgccacctc 174  Q
    ||||| || ||||||| |||||| |||||   |||||||||| ||| |||||||| |||||||||||| ||||||||| |||||||||||| ||| ||||    
T  48298579 cacgaggaagagagagatcgaaaaaatttgtgagctgatccacgctcaaagaatcatatgatgaagagaaggtaaataggtatgtcctaagcgcctcctc 48298678  T
Q  175 tttgattttgtccttcagcatttcgagcgtggagtcgtggtttttcacaaatttccatacgttaagagatgcaatatagtcaaaagcattgtggaagtct 274  Q
     ||||||||||||||||||||||| |||  || |||  | ||||||||||||||||| || | |||||||||||||  |||||| || || ||||| ||     
T  48298679 cttgattttgtccttcagcatttctagcacggtgtcacgatttttcacaaatttccacacctcaagagatgcaataatgtcaaaggccttctggaaatcg 48298778  T
Q  275 ccattgataagaagccttgtgacaaccatgacatgatcc 313  Q
    ||||| ||||||| ||||||| || |||| |||||||||    
T  48298779 ccattaataagaacccttgtggcagccataacatgatcc 48298817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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